Experiment set2IT020 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Tween 20 carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3060 -7.9 -5.5 Outer membrane protein H precursor compare
Pf6N2E2_77 -6.3 -6.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3782 -5.8 -5.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4825 -5.8 -10.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4597 -5.8 -11.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5006 -5.8 -10.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5176 -5.6 -10.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3839 -5.5 -6.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4596 -5.5 -11.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5175 -5.4 -19.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4047 -5.4 -7.4 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_64 -5.2 -4.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_71 -5.2 -7.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_2574 -5.1 -3.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_5014 -5.0 -2.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4752 -5.0 -18.1 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_5177 -4.9 -14.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_279 -4.9 -11.6 Isocitrate lyase (EC 4.1.3.1) compare
Pf6N2E2_4826 -4.8 -11.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3252 -4.6 -10.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3752 -4.6 -21.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_1381 -4.6 -10.9 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_4077 -4.5 -4.4 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3842 -4.4 -6.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3751 -4.4 -17.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_5156 -4.3 -3.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3783 -4.3 -7.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3630 -4.3 -9.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5780 -4.3 -13.6 Periplasmic protease compare
Pf6N2E2_3253 -4.3 -9.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5553 -4.2 -8.6 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_2753 -4.2 -5.7 HtrA protease/chaperone protein compare
Pf6N2E2_2258 -4.0 -14.6 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_66 -4.0 -11.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3248 -4.0 -5.2 Probable transmembrane protein compare
Pf6N2E2_4048 -4.0 -7.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3841 -4.0 -8.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5699 -4.0 -11.8 Transcriptional regulatory protein RstA conserved
Pf6N2E2_4564 -3.9 -8.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_302 -3.8 -9.0 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3932 -3.8 -5.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_2872 -3.8 -13.3 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_5700 -3.8 -14.9 Sensor histidine kinase conserved
Pf6N2E2_1400 -3.8 -11.2 Sensory box histidine kinase/response regulator compare
Pf6N2E2_3346 -3.8 -8.6 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_2073 -3.7 -10.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_1402 -3.6 -6.3 hypothetical protein compare
Pf6N2E2_5723 -3.5 -15.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_3242 -3.5 -17.3 FIG002188: hypothetical protein conserved
Pf6N2E2_605 -3.5 -4.4 FIG002465: BNR repeat protein compare
Pf6N2E2_3661 -3.4 -7.6 hypothetical protein compare
Pf6N2E2_3243 -3.4 -16.1 FIG067310: hypothetical protein conserved
Pf6N2E2_3257 -3.3 -6.6 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_606 -3.3 -13.9 FIG005548: transport protein conserved
Pf6N2E2_4638 -3.2 -5.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3241 -3.2 -10.4 Transcriptional regulator, LuxR family conserved
Pf6N2E2_4071 -3.1 -7.1 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2074 -3.1 -3.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3940 -3.0 -10.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_63 -3.0 -4.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_4611 -3.0 -5.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4759 -2.9 -14.8 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_2080 -2.8 -2.4 hypothetical protein compare
Pf6N2E2_5316 -2.8 -3.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3460 -2.8 -3.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3610 -2.7 -2.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2261 -2.7 -10.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_5754 -2.6 -14.2 Long-chain fatty acid transport protein conserved
Pf6N2E2_2277 -2.6 -3.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_5579 -2.5 -6.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_3170 -2.5 -7.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2217 -2.5 -8.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5255 -2.5 -13.1 Outer membrane stress sensor protease DegS compare
Pf6N2E2_1932 -2.4 -7.4 Transcriptional regulator, IclR family compare
Pf6N2E2_2465 -2.4 -6.1 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3260 -2.4 -6.1 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4766 -2.4 -12.0 Acyl-CoA dehydrogenase (EC 1.3.8.7) conserved
Pf6N2E2_5771 -2.4 -10.4 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_4372 -2.3 -7.1 FIG00460773: hypothetical protein compare
Pf6N2E2_2507 -2.3 -6.1 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4810 -2.3 -9.5 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_4803 -2.3 -2.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4362 -2.3 -4.7 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_3062 -2.2 -5.4 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2752 -2.2 -11.3 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_3258 -2.2 -6.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5242 -2.2 -2.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2758 -2.2 -12.6 L-aspartate oxidase (EC 1.4.3.16) compare
Pf6N2E2_2508 -2.2 -5.7 hypothetical protein compare
Pf6N2E2_5728 -2.2 -6.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5727 -2.1 -5.7 FIG00955360: hypothetical protein compare
Pf6N2E2_75 -2.1 -2.4 Colicin V production protein compare
Pf6N2E2_2756 -2.0 -7.9 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_2526 -2.0 -6.7 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_3074 -2.0 -2.6 FIG00960973: hypothetical protein compare
Pf6N2E2_2218 -1.9 -5.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5527 -1.9 -4.5 Cold shock protein CspC compare
Pf6N2E2_3762 -1.9 -8.1 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_50 -1.9 -8.4 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3835 -1.9 -5.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2335 -1.8 -7.3 Transcriptional regulator, GntR family compare
Pf6N2E2_5160 -1.8 -2.3 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4453 -1.8 -13.6 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_5219 -1.7 -9.0 FIG140336: TPR domain protein compare
Pf6N2E2_3659 -1.6 -4.6 Protein fixF compare
Pf6N2E2_178 -1.6 -1.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3984 -1.6 -9.4 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_6057 -1.6 -3.7 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_5430 -1.6 -8.8 Transglycosylase, Slt family compare
Pf6N2E2_4414 -1.6 -2.7 FIG00953808: hypothetical protein compare
Pf6N2E2_3349 -1.5 -2.0 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4279 -1.5 -8.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_1401 -1.5 -3.0 FIG00955631: hypothetical protein compare
Pf6N2E2_2696 -1.5 -9.1 Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) conserved
Pf6N2E2_5328 -1.5 -5.7 FIG00958649: hypothetical protein compare
Pf6N2E2_4162 -1.4 -3.3 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_625 -1.4 -5.9 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_4009 -1.4 -8.1 GGDEF domain protein compare
Pf6N2E2_4206 -1.4 -2.9 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_280 -1.4 -2.8 hypothetical protein compare
Pf6N2E2_4769 -1.3 -11.1 Acyl-CoA dehydrogenase (EC 1.3.8.7) conserved
Pf6N2E2_282 -1.3 -2.6 GNAT family acetyltransferase YjcF compare
Pf6N2E2_4418 -1.3 -1.1 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3251 -1.3 -8.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_1821 -1.3 -2.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4160 -1.3 -1.9 Cytochrome c5 compare
Pf6N2E2_622 -1.3 -3.6 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3833 -1.2 -4.4 hypothetical protein compare
Pf6N2E2_624 -1.2 -5.1 hypothetical protein PA3071 compare
Pf6N2E2_4747 -1.2 -2.9 Transmembrane sensor compare
Pf6N2E2_4278 -1.2 -7.5 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_2473 -1.2 -1.5 Major outer membrane lipoprotein I compare
Pf6N2E2_6058 -1.2 -5.0 FIG139976: hypothetical protein compare
Pf6N2E2_3663 -1.2 -5.0 Glycosyl transferase compare
Pf6N2E2_2714 -1.2 -2.5 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_4764 -1.1 -4.4 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_621 -1.1 -6.2 TPR domain protein in aerotolerance operon compare
Pf6N2E2_2022 -1.1 -6.0 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_1298 -1.1 -4.3 Xanthine transporter,putative compare
Pf6N2E2_180 -1.1 -3.2 Transcriptional regulator, MerR family compare
Pf6N2E2_4277 -1.1 -7.1 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_3240 -1.1 -1.7 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_4527 -1.0 -2.0 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_3373 -1.0 -2.2 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3665 -1.0 -1.1 serine/threonine protein kinase compare
Pf6N2E2_6065 -1.0 -2.2 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_1676 -1.0 -1.7 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_3613 -1.0 -5.8 GTP-binding protein HflX compare
Pf6N2E2_2510 -0.9 -2.7 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_6140 -0.9 -1.1 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3461 -0.9 -1.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2509 -0.9 -1.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5720 -0.9 -7.2 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_4994 -0.9 -4.6 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Pf6N2E2_1294 -0.9 -2.7 Carbon starvation protein A compare
Pf6N2E2_1215 -0.9 -2.7 probable membrane protein YPO2362 compare
Pf6N2E2_5181 -0.9 -6.2 Paraquat-inducible protein A compare
Pf6N2E2_5182 -0.9 -4.7 Paraquat-inducible protein A compare
Pf6N2E2_2010 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_2274 -0.8 -4.0 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_434 -0.8 -2.8 hypothetical protein compare
Pf6N2E2_4478 -0.8 -4.1 FIG019278: hypothetical protein compare
Pf6N2E2_5226 -0.8 -1.5 FIG00955589: hypothetical protein compare
Pf6N2E2_3885 -0.8 -2.4 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_620 -0.8 -4.6 BatD compare
Pf6N2E2_4479 -0.8 -2.8 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_500 -0.8 -2.6 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_4988 -0.8 -2.3 Antiholin-like protein LrgA compare
Pf6N2E2_3725 -0.8 -2.5 FIG085779: Lipoprotein compare
Pf6N2E2_5919 -0.8 -2.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_3344 -0.8 -2.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD compare
Pf6N2E2_5610 -0.8 -4.0 two-component system sensor protein compare
Pf6N2E2_613 -0.8 -1.3 lipoprotein, putative compare
Pf6N2E2_4733 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_5492 -0.8 -3.4 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Pf6N2E2_595 -0.8 -1.7 Arsenical resistance operon repressor compare
Pf6N2E2_6059 -0.8 -2.0 FIG008443: hypothetical protein compare
Pf6N2E2_4351 -0.8 -4.9 Predicted signal transduction protein compare
Pf6N2E2_4761 -0.8 -4.5 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_4797 -0.7 -1.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4631 -0.7 -4.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_4072 -0.7 -2.8 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3876 -0.7 -2.8 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_5183 -0.7 -5.7 Paraquat-inducible protein B compare
Pf6N2E2_2536 -0.7 -1.0 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_1705 -0.7 -1.3 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_89 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_4416 -0.7 -2.1 Tyrosine recombinase XerC compare
Pf6N2E2_2496 -0.7 -1.6 FIG00956575: hypothetical protein compare
Pf6N2E2_4763 -0.7 -5.0 Biotin synthesis protein BioC compare
Pf6N2E2_2506 -0.7 -5.7 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_3617 -0.7 -3.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_928 -0.7 -1.9 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_987 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_4743 -0.7 -0.9 hypothetical protein compare
Pf6N2E2_1136 -0.7 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_4204 -0.7 -1.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4989 -0.7 -3.8 LrgA-associated membrane protein LrgB conserved
Pf6N2E2_968 -0.7 -2.7 FIG00962395: hypothetical protein compare
Pf6N2E2_65 -0.7 -3.3 SAM-dependent methyltransferase YafE (UbiE paralog) compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Tween 20 in Pseudomonas fluorescens FW300-N2E2

For carbon source Tween 20 across organisms