Experiment set2IT020 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Trehalose dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_13070 -4.5 -4.4 phosphoserine phosphatase compare
AO353_20695 -4.2 -5.0 O-succinylhomoserine sulfhydrylase compare
AO353_07210 -4.0 -4.7 indole-3-glycerol-phosphate synthase compare
AO353_15980 -4.0 -10.5 trehalose PTS system, EII-BC components TreB (from data) conserved
AO353_20620 -3.9 -5.3 isopropylmalate isomerase compare
AO353_05115 -3.9 -9.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_08885 -3.9 -16.5 polyphosphate kinase compare
AO353_13165 -3.8 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
AO353_11775 -3.8 -5.9 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_12085 -3.8 -5.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_10670 -3.8 -6.8 shikimate dehydrogenase compare
AO353_07230 -3.8 -14.1 anthranilate synthase compare
AO353_07220 -3.8 -6.8 anthranilate synthase compare
AO353_08185 -3.7 -8.4 methionine biosynthesis protein MetW compare
AO353_20540 -3.7 -7.1 aromatic amino acid aminotransferase compare
AO353_14505 -3.7 -9.9 ketol-acid reductoisomerase compare
AO353_03360 -3.7 -6.7 glucose-6-phosphate dehydrogenase compare
AO353_12515 -3.7 -18.7 glutamate synthase compare
AO353_02070 -3.6 -6.0 prephenate dehydratase compare
AO353_20625 -3.6 -3.5 3-isopropylmalate dehydratase compare
AO353_12070 -3.6 -7.3 imidazoleglycerol-phosphate dehydratase compare
AO353_15985 -3.6 -5.5 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
AO353_20635 -3.6 -10.0 3-isopropylmalate dehydrogenase compare
AO353_02075 -3.5 -9.3 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08180 -3.5 -11.3 homoserine O-acetyltransferase compare
AO353_20665 -3.5 -10.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_03415 -3.5 -5.7 glucokinase compare
AO353_12520 -3.4 -11.1 glutamate synthase compare
AO353_05110 -3.4 -10.2 histidinol dehydrogenase compare
AO353_10035 -3.4 -9.8 LysR family transcriptional regulator compare
AO353_00310 -3.4 -7.9 transaldolase compare
AO353_15995 -3.4 -10.5 trehalose-specific PTS system, I, HPr, and IIA components (from data) conserved
AO353_10025 -3.4 -13.6 pyruvate carboxylase subunit B compare
AO353_03425 -3.3 -10.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_12360 -3.3 -8.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_12090 -3.3 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
AO353_08685 -3.3 -7.9 N-acetylglutamate synthase compare
AO353_07215 -3.2 -7.2 anthranilate phosphoribosyltransferase compare
AO353_15990 -3.2 -16.0 maltoporin conserved
AO353_12365 -3.2 -4.8 phosphoribosyl-AMP cyclohydrolase compare
AO353_22800 -3.2 -3.0 sulfite reductase compare
AO353_08345 -3.1 -8.7 dihydroxy-acid dehydratase compare
AO353_12075 -3.1 -8.0 imidazole glycerol phosphate synthase subunit HisH compare
AO353_14400 -3.1 -3.6 Fis family transcriptional regulator compare
AO353_10710 -3.0 -4.1 tryptophan synthase subunit beta compare
AO353_10030 -3.0 -10.7 pyruvate carboxylase subunit A compare
AO353_08475 -3.0 -9.0 phosphoserine phosphatase compare
AO353_02685 -3.0 -4.0 phosphoribosylglycinamide formyltransferase compare
AO353_14500 -3.0 -5.7 acetolactate synthase 3 regulatory subunit compare
AO353_04155 -2.9 -11.9 ornithine carbamoyltransferase compare
AO353_13160 -2.9 -2.0 membrane protease HflC compare
AO353_09240 -2.9 -2.8 acetylglutamate kinase compare
AO353_14495 -2.8 -9.2 acetolactate synthase 3 catalytic subunit compare
AO353_07155 -2.8 -7.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_08510 -2.8 -5.3 3-phosphoglycerate dehydrogenase compare
AO353_15925 -2.7 -12.6 2-isopropylmalate synthase compare
AO353_14370 -2.7 -6.4 glucose-6-phosphate isomerase compare
AO353_05625 -2.7 -2.6 transcription elongation factor GreA compare
AO353_08780 -2.7 -8.4 5-formyltetrahydrofolate cyclo-ligase compare
AO353_09000 -2.6 -4.9 argininosuccinate lyase compare
AO353_12500 -2.6 -1.8 shikimate kinase compare
AO353_10705 -2.6 -4.3 tryptophan synthase subunit alpha compare
AO353_04105 -2.5 -8.2 argininosuccinate synthase compare
AO353_19060 -2.5 -5.7 CysB family transcriptional regulator compare
AO353_24130 -2.5 -3.7 hypothetical protein compare
AO353_14595 -2.5 -9.2 carbonate dehydratase compare
AO353_18540 -2.5 -2.9 pseudouridine synthase compare
AO353_06495 -2.5 -5.7 gamma-glutamyl phosphate reductase compare
AO353_03420 -2.5 -5.7 phosphogluconate dehydratase compare
AO353_13100 -2.5 -1.7 GTPase RsgA compare
AO353_20175 -2.4 -3.6 ATP-dependent Clp protease proteolytic subunit compare
AO353_11750 -2.4 -3.2 ATPase compare
AO353_08015 -2.4 -7.2 5,10-methylenetetrahydrofolate reductase compare
AO353_05080 -2.3 -10.5 sulfate adenylyltransferase compare
AO353_14940 -2.3 -4.4 malate:quinone oxidoreductase compare
AO353_02250 -2.3 -4.3 chorismate synthase compare
AO353_05105 -2.3 -10.0 histidinol-phosphate aminotransferase compare
AO353_03020 -2.3 -7.5 arginine N-succinyltransferase compare
AO353_03585 -2.3 -3.6 ATP-dependent DNA helicase RuvA compare
AO353_05075 -2.3 -9.7 adenylylsulfate kinase compare
AO353_00650 -2.3 -3.3 cytochrome biogenesis protein compare
AO353_08165 -2.2 -3.3 pyrroline-5-carboxylate reductase compare
AO353_00495 -2.2 -2.5 DNA topoisomerase I compare
AO353_14115 -2.2 -6.7 gamma-glutamyl kinase compare
AO353_23495 -2.1 -3.0 SAM-dependent methyltransferase compare
AO353_02270 -2.1 -5.2 isochorismatase compare
AO353_16940 -2.0 -5.4 deoxycytidine triphosphate deaminase compare
AO353_10455 -2.0 -1.9 tRNA modification GTPase MnmE compare
AO353_02810 -2.0 -7.6 histidine kinase compare
AO353_08880 -2.0 -2.7 exopolyphosphatase compare
AO353_02060 -2.0 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_27650 -2.0 -4.7 cell division protein FtsK compare
AO353_07355 -1.9 -5.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_08995 -1.9 -9.8 chemotaxis protein CheY compare
AO353_12345 -1.9 -2.8 twin-arginine protein translocation system subunit TatC compare
AO353_21410 -1.9 -3.1 hypothetical protein compare
AO353_12115 -1.9 -2.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_08265 -1.9 -5.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_03015 -1.9 -4.3 arginine N-succinyltransferase compare
AO353_13140 -1.9 -5.4 tRNA dimethylallyltransferase compare
AO353_03590 -1.9 -3.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_11850 -1.8 -4.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_28425 -1.8 -3.7 TetR family transcriptional regulator compare
AO353_02710 -1.8 -9.1 (p)ppGpp synthetase compare
AO353_11165 -1.8 -8.9 hypothetical protein compare
AO353_02720 -1.8 -5.6 cysteine synthase compare
AO353_00825 -1.8 -3.3 porin compare
AO353_06050 -1.8 -5.4 exodeoxyribonuclease V subunit gamma compare
AO353_09285 -1.7 -9.4 reactive intermediate/imine deaminase compare
AO353_00510 -1.7 -5.5 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_14405 -1.7 -10.1 ATPase compare
AO353_07075 -1.7 -4.2 elongation factor Tu compare
AO353_05690 -1.7 -2.9 SsrA-binding protein compare
AO353_15250 -1.7 -3.3 cytochrome B compare
AO353_03235 -1.7 -7.5 glutamate-pyruvate aminotransferase compare
AO353_00750 -1.7 -3.7 GntR family transcriptional regulator compare
AO353_05130 -1.7 -2.1 anti-anti-sigma factor compare
AO353_04220 -1.6 -5.4 chemotaxis protein CheY compare
AO353_01780 -1.6 -8.7 heat-shock protein Hsp90 compare
AO353_10985 -1.6 -3.1 hypothetical protein compare
AO353_02195 -1.6 -3.8 spermidine synthase compare
AO353_07515 -1.6 -2.3 transporter compare
AO353_14220 -1.5 -1.7 ribosomal large subunit pseudouridine synthase D compare
AO353_14990 -1.5 -2.5 hypothetical protein compare
AO353_00900 -1.5 -6.7 2-methylisocitrate lyase compare
AO353_19360 -1.5 -2.7 peroxiredoxin compare
AO353_12105 -1.5 -5.3 peptidase S41 compare
AO353_03580 -1.5 -3.3 ATP-dependent DNA helicase RuvB compare
AO353_27680 -1.5 -5.4 ATP-dependent Clp protease adaptor ClpS compare
AO353_08045 -1.5 -10.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_08485 -1.5 -9.5 threonine dehydratase compare
AO353_07325 -1.5 -2.1 diadenosine tetraphosphatase compare
AO353_10630 -1.5 -4.6 16S rRNA methyltransferase compare
AO353_14395 -1.5 -3.6 poly(A) polymerase compare
AO353_14420 -1.5 -3.1 molecular chaperone DnaK compare
AO353_07525 -1.5 -9.4 biotin synthase compare
AO353_20185 -1.4 -5.1 DNA-binding protein compare
AO353_19090 -1.4 -2.2 MarR family transcriptional regulator compare
AO353_00105 -1.4 -1.9 hypothetical protein compare
AO353_26900 -1.4 -4.4 glycerate kinase compare
AO353_01080 -1.4 -7.3 hypothetical protein compare
AO353_15900 -1.4 -2.6 GTP-binding protein compare
AO353_11770 -1.4 -1.8 molecular chaperone Hsp33 compare
AO353_04565 -1.4 -4.3 nucleoid-associated protein compare
AO353_12395 -1.4 -3.4 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_00635 -1.3 -2.9 hypothetical protein compare
AO353_11730 -1.3 -6.5 glutamate--cysteine ligase compare
AO353_01375 -1.3 -4.9 phosphate acyltransferase compare
AO353_06045 -1.3 -5.4 exodeoxyribonuclease V subunit beta compare
AO353_04065 -1.3 -3.5 electron transporter RnfB compare
AO353_13640 -1.3 -3.5 histidine kinase compare
AO353_18715 -1.3 -1.6 histidine kinase compare
AO353_10440 -1.3 -4.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_20860 -1.3 -2.3 hypothetical protein compare
AO353_15560 -1.3 -3.0 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
AO353_08980 -1.3 -2.5 heme biosynthesis operon protein HemX compare
AO353_10945 -1.3 -2.5 cytochrome C compare
AO353_08505 -1.3 -7.5 FAD-linked oxidase compare
AO353_07505 -1.3 -6.1 dethiobiotin synthetase compare
AO353_12420 -1.2 -3.0 predicted FeS cluster maintenance protein (from data) compare
AO353_14935 -1.2 -3.3 aminopeptidase compare
AO353_09135 -1.2 -1.5 cytochrome C compare
AO353_04175 -1.2 -2.9 glycerol uptake facilitator GlpF compare
AO353_05520 -1.2 -4.3 nicotinate-nucleotide pyrophosphorylase compare
AO353_09885 -1.2 -2.3 transcriptional regulator PhoU compare
AO353_02320 -1.2 -4.9 allantoinase compare
AO353_07495 -1.2 -9.0 acyl-CoA dehydrogenase compare
AO353_00620 -1.2 -2.3 cytochrome C oxidase Cbb3 compare
AO353_00610 -1.2 -2.2 cytochrome C oxidase Cbb3 compare
AO353_17640 -1.2 -2.0 serine peptidase compare
AO353_12650 -1.2 -1.4 hypothetical protein compare
AO353_15555 -1.2 -3.8 fumarylacetoacetase compare
AO353_07235 -1.2 -5.7 phosphoglycolate phosphatase compare
AO353_26620 -1.2 -3.2 ArsR family transcriptional regulator compare
AO353_02515 -1.2 -4.9 recombination-associated protein RdgC compare
AO353_09260 -1.2 -4.5 ribonuclease PH compare
AO353_07520 -1.2 -7.6 8-amino-7-oxononanoate synthase compare
AO353_08100 -1.1 -2.5 chemotaxis protein CheY compare
AO353_13155 -1.1 -3.0 hypothetical protein compare
AO353_17175 -1.1 -1.9 beta-ketoadipyl CoA thiolase compare
AO353_06040 -1.1 -2.6 exodeoxyribonuclease V subunit alpha compare
AO353_21615 -1.1 -6.7 methionine synthase compare
AO353_22685 -1.1 -2.7 peroxidase compare
AO353_06850 -1.1 -3.4 MFS transporter compare
AO353_22860 -1.1 -5.7 cytochrome C oxidase Cbb3 compare
AO353_14975 -1.1 -3.7 hypothetical protein compare
AO353_15170 -1.1 -2.0 cytochrome D ubiquinol oxidase subunit III compare
AO353_23790 -1.1 -2.4 metal-binding protein compare
AO353_17410 -1.1 -1.7 arylsulfate sulfotransferase compare
AO353_15885 -1.0 -3.9 Cro/Cl family transcriptional regulator compare
AO353_02660 -1.0 -3.3 peptidase P60 compare
AO353_13610 -1.0 -3.0 precorrin isomerase compare
AO353_09065 -1.0 -4.5 hypothetical protein compare
AO353_16845 -1.0 -5.5 LysR family transcriptional regulator compare
AO353_03520 -1.0 -2.2 hypothetical protein compare
AO353_07510 -1.0 -5.7 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_22920 -1.0 -3.6 GntR family transcriptional regulator compare
AO353_17235 -1.0 -2.4 4-carboxymuconolactone decarboxylase compare
AO353_01035 -1.0 -2.3 hypothetical protein compare
AO353_06720 -1.0 -1.5 NrdR family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Trehalose dihydrate in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Trehalose dihydrate across organisms