Experiment set2IT020 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS04485 -4.9 -11.3 riboflavin synthase compare
MMJJ_RS05935 -4.0 -2.4 Era-like GTP-binding protein compare
MMJJ_RS01935 -3.7 -5.0 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS04200 -3.6 -7.3 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS03865 -3.6 -1.5 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS06625 -3.5 -2.5 pyruvate synthase subunit PorB compare
MMJJ_RS01870 -3.3 -2.5 methanogenesis marker 15 protein compare
MMJJ_RS06750 -3.2 -3.2 homoaconitase large subunit compare
MMJJ_RS07720 -3.1 -2.5 UPF0058 family protein compare
MMJJ_RS06910 -3.1 -3.8 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS07665 -3.1 -21.1 formate dehydrogenase subunit alpha compare
MMJJ_RS05330 -3.1 -2.1 DNA polymerase II large subunit compare
MMJJ_RS06860 -3.1 -3.4 hypothetical protein compare
MMJJ_RS07360 -3.0 -2.1 TIGR00269 family protein compare
MMJJ_RS08660 -3.0 -4.0 acetylornithine transaminase compare
MMJJ_RS00570 -3.0 -2.2 ribonuclease P compare
MMJJ_RS03840 -2.9 -4.4 DHH family phosphoesterase compare
MMJJ_RS05535 -2.9 -14.0 hypothetical protein compare
MMJJ_RS07670 -2.9 -17.8 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS00370 -2.9 -2.5 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS07655 -2.9 -14.2 hypothetical protein compare
MMJJ_RS06695 -2.8 -3.5 amidohydrolase compare
MMJJ_RS04475 -2.8 -3.5 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS04970 -2.8 -2.1 DUF655 domain-containing protein compare
MMJJ_RS07725 -2.8 -7.7 DNA primase DnaG compare
MMJJ_RS03895 -2.8 -4.7 hydrogenase expression/formation protein HypE compare
MMJJ_RS01755 -2.8 -3.0 ferrous iron transport protein B compare
MMJJ_RS07660 -2.8 -10.7 carbonic anhydrase compare
MMJJ_RS08005 -2.7 -17.4 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS08625 -2.7 -8.7 magnesium/cobalt transporter CorA compare
MMJJ_RS03055 -2.7 -3.6 hypothetical protein compare
MMJJ_RS03760 -2.7 -3.9 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS07380 -2.7 -8.2 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS01600 -2.6 -3.4 radical SAM protein compare
MMJJ_RS03620 -2.6 -6.5 DUF2097 domain-containing protein compare
MMJJ_RS00450 -2.6 -2.2 DUF126 domain-containing protein compare
MMJJ_RS05445 -2.6 -2.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS07945 -2.6 -3.0 4Fe-4S binding protein compare
MMJJ_RS01200 -2.6 -3.4 PRC-barrel domain-containing protein compare
MMJJ_RS06855 -2.6 -1.8 DUF2104 domain-containing protein compare
MMJJ_RS07245 -2.6 -5.8 amidohydrolase family protein compare
MMJJ_RS00050 -2.6 -9.9 AAA family ATPase compare
MMJJ_RS09190 -2.6 -2.0 tryptophan synthase subunit beta compare
MMJJ_RS04155 -2.6 -6.7 hypothetical protein compare
MMJJ_RS00035 -2.5 -15.5 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS06110 -2.5 -2.2 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS06490 -2.5 -3.2 methanogenesis marker 2 protein compare
MMJJ_RS08055 -2.5 -7.6 methanogenesis marker 14 protein compare
MMJJ_RS08020 -2.5 -8.3 nucleotidyltransferase domain-containing protein compare
MMJJ_RS03200 -2.5 -2.6 uroporphyrinogen-III synthase compare
MMJJ_RS06600 -2.5 -3.3 DUF555 domain-containing protein compare
MMJJ_RS00045 -2.4 -14.3 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS02045 -2.4 -3.3 molybdenum cofactor guanylyltransferase compare
MMJJ_RS00060 -2.4 -16.2 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS03615 -2.4 -3.0 cobalt-precorrin-8 methylmutase compare
MMJJ_RS04685 -2.4 -9.8 carbamoyltransferase HypF compare
MMJJ_RS01810 -2.4 -1.5 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS05650 -2.4 -3.4 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS06510 -2.3 -3.3 LL-diaminopimelate aminotransferase compare
MMJJ_RS00040 -2.3 -7.8 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS06225 -2.3 -2.2 adenosylmethionine decarboxylase compare
MMJJ_RS00055 -2.3 -10.3 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS04150 -2.3 -3.1 DUF5379 domain-containing protein compare
MMJJ_RS01405 -2.3 -1.5 proline--tRNA ligase compare
MMJJ_RS05620 -2.3 -4.5 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS05810 -2.3 -6.1 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS00080 -2.3 -13.6 DUF166 domain-containing protein compare
MMJJ_RS01750 -2.3 -2.5 ferrous iron transport protein A compare
MMJJ_RS06915 -2.3 -13.9 helix-turn-helix domain-containing protein compare
MMJJ_RS05190 -2.3 -8.9 gamma carbonic anhydrase family protein compare
MMJJ_RS08340 -2.3 -6.2 archaeoflavoprotein AfpA compare
MMJJ_RS05655 -2.3 -8.1 HisA/HisF family protein compare
MMJJ_RS07705 -2.2 -3.3 GTP-binding protein EngB compare
MMJJ_RS04800 -2.2 -6.7 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS03965 -2.2 -2.3 DNA-directed RNA polymerase subunit L compare
MMJJ_RS03500 -2.2 -12.5 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMJJ_RS06840 -2.2 -3.7 nickel-dependent hydrogenase large subunit compare
MMJJ_RS07350 -2.2 -3.7 4Fe-4S binding protein compare
MMJJ_RS03005 -2.2 -3.6 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS00580 -2.2 -1.7 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS03125 -2.1 -4.4 GMC oxidoreductase compare
MMJJ_RS06185 -2.1 -6.7 cobalamin biosynthesis protein compare
MMJJ_RS03245 -2.1 -1.7 UMP kinase compare
MMJJ_RS05575 -2.1 -4.0 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS05070 -2.1 -2.0 DNA primase catalytic subunit PriS compare
MMJJ_RS07640 -2.1 -17.7 cache domain-containing protein compare
MMJJ_RS05610 -2.1 -4.7 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS00065 -2.1 -9.9 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS09130 -2.1 -1.6 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS00075 -2.1 -11.4 AAA family ATPase compare
MMJJ_RS05490 -2.1 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS06875 -2.1 -2.3 hypothetical protein compare
MMJJ_RS00215 -2.1 -2.3 CCA tRNA nucleotidyltransferase compare
MMJJ_RS00125 -2.1 -2.7 KEOPS complex subunit Cgi121 compare
MMJJ_RS05590 -2.0 -1.8 homoserine dehydrogenase compare
MMJJ_RS04655 -2.0 -5.5 FAD-dependent oxidoreductase compare
MMJJ_RS05770 -2.0 -2.5 flagellar protein D compare
MMJJ_RS03815 -2.0 -2.0 nascent polypeptide-associated complex protein compare
MMJJ_RS03115 -2.0 -7.4 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS05950 -2.0 -3.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS03150 -2.0 -6.4 2-phospho-L-lactate transferase compare
MMJJ_RS02090 -2.0 -4.0 tyramine--L-glutamate ligase compare
MMJJ_RS00275 -2.0 -1.6 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS01360 -1.9 -2.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS07635 -1.9 -11.0 response regulator transcription factor compare
MMJJ_RS07950 -1.9 -3.0 4Fe-4S binding protein compare
MMJJ_RS03190 -1.9 -2.8 phosphopyruvate hydratase compare
MMJJ_RS02200 -1.9 -7.9 chorismate pyruvate-lyase family protein compare
MMJJ_RS06940 -1.9 -10.5 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS03670 -1.9 -4.1 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS04995 -1.9 -5.8 Tfx family DNA-binding protein compare
MMJJ_RS05930 -1.9 -1.6 cell division protein SepF compare
MMJJ_RS07650 -1.9 -12.8 formate/nitrite transporter family protein compare
MMJJ_RS03110 -1.9 -3.4 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS06930 -1.9 -2.7 type II methionyl aminopeptidase compare
MMJJ_RS06040 -1.9 -3.2 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS06270 -1.9 -8.4 dethiobiotin synthase compare
MMJJ_RS06050 -1.9 -10.3 molybdopterin molybdotransferase MoeA compare
MMJJ_RS05260 -1.8 -5.2 ATP-grasp domain-containing protein compare
MMJJ_RS03270 -1.8 -1.8 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS01830 -1.8 -4.1 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS07345 -1.8 -5.5 homocysteine biosynthesis protein compare
MMJJ_RS06250 -1.8 -2.4 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS08330 -1.8 -2.5 SufD family Fe-S cluster assembly protein compare
MMJJ_RS08250 -1.8 -6.0 hydrogenase maturation peptidase HycI compare
MMJJ_RS05135 -1.8 -1.6 50S ribosomal protein L18Ae compare
MMJJ_RS08010 -1.8 -5.9 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS03820 -1.8 -3.2 hydrogenase formation protein HypD compare
MMJJ_RS06905 -1.8 -1.8 hypothetical protein compare
MMJJ_RS08065 -1.8 -3.0 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS03295 -1.7 -11.3 PHP domain-containing protein compare
MMJJ_RS00195 -1.7 -3.6 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS06700 -1.7 -3.9 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS00355 -1.7 -2.7 ribonuclease P protein component 4 compare
MMJJ_RS08080 -1.7 -8.5 TIGR00300 family protein compare
MMJJ_RS08155 -1.7 -4.2 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS06260 -1.7 -5.2 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS04595 -1.7 -4.4 hypothetical protein compare
MMJJ_RS04985 -1.7 -3.6 glutamyl-tRNA reductase compare
MMJJ_RS04050 -1.7 -1.5 dihydroneopterin aldolase family protein compare
MMJJ_RS07425 -1.7 -8.3 MBL fold metallo-hydrolase compare
MMJJ_RS00270 -1.7 -2.5 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS06175 -1.7 -1.4 DUF1743 domain-containing protein compare
MMJJ_RS01960 -1.7 -6.0 glycosyltransferase family 2 protein compare
MMJJ_RS05065 -1.7 -3.2 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS02190 -1.7 -12.2 molybdopterin biosynthesis protein compare
MMJJ_RS07980 -1.7 -9.6 biotin synthase BioB compare
MMJJ_RS04980 -1.7 -4.0 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS07015 -1.7 -1.6 PFL family protein compare
MMJJ_RS03170 -1.6 -5.6 DUF5612 domain-containing protein compare
MMJJ_RS06255 -1.6 -6.0 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS04670 -1.6 -5.5 DUF2117 domain-containing protein compare
MMJJ_RS06180 -1.6 -3.0 tryptophan--tRNA ligase compare
MMJJ_RS05155 -1.6 -4.5 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS06725 -1.6 -10.1 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS08035 -1.6 -6.6 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS00360 -1.6 -2.0 adenosylhomocysteinase compare
MMJJ_RS05195 -1.6 -5.8 hypothetical protein compare
MMJJ_RS06485 -1.6 -2.9 phosphoglycerate kinase compare
MMJJ_RS07970 -1.6 -1.8 O-phospho-L-seryl-tRNA:Cys-tRNA synthase compare
MMJJ_RS02920 -1.6 -1.8 30S ribosomal protein S27ae compare
MMJJ_RS06155 -1.6 -4.4 phosphatidylglycerophosphatase A compare
MMJJ_RS08840 -1.6 -3.0 calcium/sodium antiporter compare
MMJJ_RS06220 -1.6 -3.9 polyamine aminopropyltransferase compare
MMJJ_RS07960 -1.6 -2.6 quinolinate synthase NadA compare
MMJJ_RS08335 -1.6 -2.2 ABC transporter ATP-binding protein compare
MMJJ_RS01880 -1.6 -2.4 RlmE family RNA methyltransferase compare
MMJJ_RS00645 -1.6 -8.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS03785 -1.6 -2.4 hypothetical protein compare
MMJJ_RS07040 -1.6 -1.3 preprotein translocase subunit SecY compare
MMJJ_RS01355 -1.5 -2.2 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS05995 -1.5 -1.9 ATP-binding cassette domain-containing protein compare
MMJJ_RS09375 -1.5 -1.4 hypothetical protein compare
MMJJ_RS04675 -1.5 -4.4 thiamine pyrophosphate-binding protein compare
MMJJ_RS02035 -1.5 -5.6 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS04520 -1.5 -4.1 coenzyme F430 synthase compare
MMJJ_RS09175 -1.4 -0.7 anthranilate synthase component I compare
MMJJ_RS03660 -1.4 -2.6 DUF447 family protein compare
MMJJ_RS08855 -1.4 -4.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS04650 -1.4 -4.7 nitrogenase iron protein compare
MMJJ_RS05295 -1.4 -6.9 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS05415 -1.4 -1.8 hypothetical protein compare
MMJJ_RS00070 -1.4 -3.1 CooT family nickel-binding protein compare
MMJJ_RS01690 -1.4 -2.9 methanogenesis marker 12 protein compare
MMJJ_RS01415 -1.4 -1.9 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS00600 -1.4 -2.5 hydroxymethylbilane synthase compare
MMJJ_RS04720 -1.4 -1.3 IMP dehydrogenase compare
MMJJ_RS07995 -1.4 -4.8 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS07715 -1.4 -1.9 UbiD family decarboxylase compare
MMJJ_RS06375 -1.4 -3.3 UbiX family flavin prenyltransferase compare
MMJJ_RS04730 -1.4 -2.2 tyrosine decarboxylase MfnA compare
MMJJ_RS03230 -1.3 -3.3 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS06835 -1.3 -8.2 4Fe-4S binding protein compare
MMJJ_RS06785 -1.3 -5.4 RNA ligase partner protein compare
MMJJ_RS07410 -1.3 -2.8 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS00550 -1.3 -6.3 AIR synthase-related protein compare
MMJJ_RS02055 -1.3 -8.7 GTP 3',8-cyclase MoaA compare
MMJJ_RS07155 -1.3 -6.5 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS02935 -1.3 -1.4 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS06030 -1.3 -3.8 4Fe-4S binding protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms