Experiment set2IT020 for Bifidobacterium breve UCC2003

Compare to:

CDM1 without Glutamate

200 most important genes:

  gene name fitness t score description  
BBR_RS12235 -5.8 -2.4 hypothetical protein compare
BBR_RS13040 -5.7 -3.9 CHAP domain-containing protein compare
BBR_RS14210 -5.7 -3.9 hypothetical protein compare
BBR_RS13030 -4.5 -4.4 cell division ATP-binding protein FtsE compare
BBR_RS16750 -4.3 -4.2 ParA family protein compare
BBR_RS13035 -4.0 -3.9 ABC transporter permease compare
BBR_RS18695 -3.4 -6.9 PRD domain-containing protein compare
BBR_RS16255 -3.3 -3.2 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS15455 -3.1 -3.0 orotate phosphoribosyltransferase compare
BBR_RS11210 -3.0 -12.7 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS20430 -2.9 -4.4 hypothetical protein compare
BBR_RS12375 -2.8 -2.6 pantetheine-phosphate adenylyltransferase compare
BBR_RS10660 -2.6 -19.1 esterase compare
BBR_RS20690 -2.6 -3.2 hypothetical protein compare
BBR_RS11205 -2.5 -5.4 HPr family phosphocarrier protein compare
BBR_RS16430 -2.5 -4.1 nucleotide pyrophosphatase compare
BBR_RS19905 -2.5 -1.4 methionine--tRNA ligase compare
BBR_RS14130 -2.3 -2.1 septum formation initiator family protein compare
BBR_RS15785 -2.3 -3.4 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS18690 -2.2 -7.1 diacylglycerol kinase compare
BBR_RS16820 -2.2 -3.8 RNA polymerase sigma factor RpoE compare
BBR_RS16965 -2.1 -1.5 ATP-dependent DNA helicase compare
BBR_RS10285 -2.1 -1.8 membrane protein compare
BBR_RS14070 -2.0 -7.0 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS16555 -2.0 -1.1 DNA translocase FtsK compare
BBR_RS14540 -2.0 -4.1 Na+/H+ antiporter NhaA compare
BBR_RS11720 -1.9 -3.9 DUF2469 domain-containing protein compare
BBR_RS18050 -1.9 -3.1 threonylcarbamoyl-AMP synthase compare
BBR_RS19760 -1.9 -2.0 polysaccharide ABC transporter ATPase compare
BBR_RS11025 -1.9 -12.6 aspartate-semialdehyde dehydrogenase compare
BBR_RS14205 -1.9 -2.3 hypothetical protein compare
BBR_RS18725 -1.9 -3.7 ribonuclease HI compare
BBR_RS18735 -1.8 -8.3 hypothetical protein compare
BBR_RS15520 -1.8 -3.8 shikimate 5-dehydrogenase compare
BBR_RS16955 -1.8 -2.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS16970 -1.7 -6.8 phosphoglycerate dehydrogenase compare
BBR_RS19535 -1.7 -10.3 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS11020 -1.7 -9.3 ACT domain-containing protein compare
BBR_RS19120 -1.7 -6.2 helicase compare
BBR_RS15440 -1.7 -3.4 orotidine-5'-phosphate decarboxylase compare
BBR_RS13910 -1.7 -1.8 arginine repressor compare
BBR_RS16425 -1.7 -2.9 DUF3071 domain-containing protein compare
BBR_RS19540 -1.7 -2.9 homoserine dehydrogenase compare
BBR_RS10555 -1.6 -1.7 DUF3073 domain-containing protein compare
BBR_RS17135 -1.6 -1.5 RluA family pseudouridine synthase compare
BBR_RS11665 -1.6 -3.1 hypothetical protein compare
BBR_RS13735 -1.6 -1.4 Lon protease compare
BBR_RS11015 -1.6 -8.9 aspartate kinase compare
BBR_RS10255 -1.6 -2.3 chromosomal replication initiator protein DnaA compare
BBR_RS14240 -1.6 -5.2 1,4-alpha-glucan branching protein GlgB compare
BBR_RS14230 -1.6 -5.3 HAMP domain-containing histidine kinase compare
BBR_RS14365 -1.5 -4.4 hypothetical protein compare
BBR_RS18570 -1.5 -8.2 phosphoserine transaminase compare
BBR_RS19740 -1.5 -11.4 DUF2142 domain-containing protein compare
BBR_RS15675 -1.5 -5.7 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS15680 -1.5 -6.0 succinate--CoA ligase subunit alpha compare
BBR_RS17615 -1.4 -6.7 phosphoserine phosphatase SerB compare
BBR_RS16220 -1.4 -0.8 DNA cytosine methyltransferase compare
BBR_RS14215 -1.4 -3.1 peptidase compare
BBR_RS16600 -1.4 -8.4 aconitate hydratase AcnA compare
BBR_RS10445 -1.4 -10.2 HlyC/CorC family transporter compare
BBR_RS11540 -1.4 -3.0 DUF1727 domain-containing protein compare
BBR_RS20955 -1.4 -1.3 hypothetical protein compare
BBR_RS15755 -1.4 -1.8 hypothetical protein compare
BBR_RS19240 -1.3 -9.1 LacI family transcriptional regulator compare
BBR_RS12460 -1.3 -5.1 LacI family DNA-binding transcriptional regulator compare
BBR_RS19355 -1.3 -1.5 tRNA-Gly compare
BBR_RS16155 -1.3 -7.8 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS20925 -1.2 -1.5 amino acid permease compare
BBR_RS17995 -1.2 -6.8 citrate synthase compare
BBR_RS12660 -1.2 -5.2 EpsG family protein compare
BBR_RS15845 -1.2 -0.9 hypothetical protein compare
BBR_RS15170 -1.2 -5.2 HlyC/CorC family transporter compare
BBR_RS12855 -1.1 -4.1 glycine cleavage system protein H compare
BBR_RS19945 -1.1 -6.3 MarR family transcriptional regulator compare
BBR_RS11675 -1.1 -1.4 hypothetical protein compare
BBR_RS14265 -1.1 -3.6 Solute-binding protein of ABC transporter system for metals compare
BBR_RS14190 -1.1 -4.8 transcriptional regulator compare
BBR_RS19700 -1.1 -9.8 ATP-dependent chaperone ClpB compare
BBR_RS17990 -1.1 -6.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS14660 -1.1 -1.4 transcriptional regulator compare
BBR_RS16610 -1.1 -4.0 hypothetical protein compare
BBR_RS20465 -1.1 -4.1 chromosome partitioning protein compare
BBR_RS15860 -1.1 -0.9 DUF2316 domain-containing protein compare
BBR_RS17905 -1.1 -10.1 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS11355 -1.0 -3.9 hypothetical protein compare
BBR_RS20450 -1.0 -7.5 murein biosynthesis integral membrane protein MurJ compare
BBR_RS13305 -1.0 -3.2 transcriptional repressor compare
BBR_RS12840 -1.0 -4.9 DUF4916 domain-containing protein compare
BBR_RS16975 -1.0 -2.3 transcriptional repressor NrdR compare
BBR_RS20920 -1.0 -1.6 hypothetical protein compare
BBR_RS12835 -1.0 -3.7 thioredoxin compare
BBR_RS16845 -1.0 -1.4 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS19475 -1.0 -7.2 AEC family transporter compare
BBR_RS10740 -1.0 -1.1 tRNA-Gly compare
BBR_RS13960 -1.0 -0.7 thiamine biosynthesis protein ThiS compare
BBR_RS13770 -1.0 -2.0 DNA repair protein RecO compare
BBR_RS20885 -1.0 -0.7 hypothetical protein compare
BBR_RS12620 -0.9 -6.1 glycosyltransferase family 1 protein compare
BBR_RS16670 -0.9 -4.2 hypothetical protein compare
BBR_RS19640 -0.9 -0.7 phosphoesterase compare
BBR_RS12175 -0.9 -4.6 TetR/AcrR family transcriptional regulator compare
BBR_RS20700 -0.9 -1.7 ribulose phosphate epimerase compare
BBR_RS13510 -0.9 -4.1 LysR family transcriptional regulator compare
BBR_RS14885 -0.9 -2.4 cyclomaltodextrinase compare
BBR_RS16250 -0.9 -2.0 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS19325 -0.9 -1.3 hypothetical protein compare
BBR_RS15880 -0.9 -1.9 hypothetical protein compare
BBR_RS11680 -0.9 -4.9 23S rRNA methyltransferase compare
BBR_RS18745 -0.9 -0.8 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS13740 -0.9 -2.8 DUF3052 domain-containing protein compare
BBR_RS16065 -0.9 -2.4 DUF488 domain-containing protein compare
BBR_RS14280 -0.9 -1.4 dephospho-CoA kinase compare
BBR_RS13840 -0.9 -3.5 DUF3043 domain-containing protein compare
BBR_RS17865 -0.8 -2.2 MarR family transcriptional regulator compare
BBR_RS11470 -0.8 -0.8 6-phosphogluconolactonase compare
BBR_RS17305 -0.8 -2.3 hypothetical protein compare
BBR_RS12600 -0.8 -3.5 serine acetyltransferase compare
BBR_RS16940 -0.8 -3.0 hypothetical protein compare
BBR_RS13215 -0.8 -1.2 hypothetical protein compare
BBR_RS13405 -0.8 -2.4 hypothetical protein compare
BBR_RS12700 -0.8 -4.3 hypothetical protein compare
BBR_RS15330 -0.8 -2.9 hypothetical protein compare
BBR_RS19260 -0.8 -6.2 hypothetical protein compare
BBR_RS10620 -0.8 -2.2 phosphoprotein phosphatase compare
BBR_RS12545 -0.8 -1.6 DUF4012 domain-containing protein compare
BBR_RS12550 -0.8 -6.1 sugar transferase compare
BBR_RS12760 -0.8 -3.9 hypothetical protein compare
BBR_RS10625 -0.7 -1.3 FHA domain-containing protein compare
BBR_RS20440 -0.7 -2.6 NUDIX hydrolase compare
BBR_RS10905 -0.7 -2.0 nucleotide exchange factor GrpE compare
BBR_RS12315 -0.7 -4.9 cation transporter compare
BBR_RS18035 -0.7 -1.4 oligoribonuclease compare
BBR_RS19095 -0.7 -4.3 magnesium transporter compare
BBR_RS15300 -0.7 -2.4 peroxiredoxin compare
BBR_RS14700 -0.7 -1.7 type II toxin-antitoxin system PemK/MazF family toxin compare
BBR_RS14330 -0.7 -1.2 glycogen debranching enzyme GlgX compare
BBR_RS13325 -0.7 -2.8 hypothetical protein compare
BBR_RS12975 -0.7 -4.3 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS15420 -0.7 -4.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
BBR_RS19055 -0.7 -0.9 ferredoxin family protein compare
BBR_RS16655 -0.7 -2.7 tyrosine recombinase XerC compare
BBR_RS12640 -0.7 -4.3 glycosyl transferase compare
BBR_RS16835 -0.7 -1.4 cell wall biosynthesis-associated protein compare
BBR_RS16605 -0.7 -3.5 hypothetical protein compare
BBR_RS17590 -0.7 -2.6 PTS sugar transporter subunit IIA compare
BBR_RS10910 -0.7 -4.4 molecular chaperone DnaJ compare
BBR_RS16445 -0.6 -2.4 hypothetical protein compare
BBR_RS17455 -0.6 -3.4 DNA-binding response regulator compare
BBR_RS19635 -0.6 -4.2 IclR family transcriptional regulator compare
BBR_RS16080 -0.6 -1.7 DUF1287 domain-containing protein compare
BBR_RS13415 -0.6 -4.0 hypothetical protein compare
BBR_RS11505 -0.6 -4.9 TetR/AcrR family transcriptional regulator compare
BBR_RS19115 -0.6 -1.6 hypothetical protein compare
BBR_RS18755 -0.6 -0.9 30S ribosome-binding factor RbfA compare
BBR_RS15130 -0.6 -0.9 metal-sulfur cluster assembly factor compare
BBR_RS13805 -0.6 -1.4 hypothetical protein compare
BBR_RS16015 -0.6 -2.4 DUF2089 domain-containing protein compare
BBR_RS15295 -0.6 -3.2 Cof-type HAD-IIB family hydrolase compare
BBR_RS12635 -0.6 -4.9 polysaccharide biosynthesis protein compare
BBR_RS11570 -0.6 -3.9 YggS family pyridoxal phosphate-dependent enzyme compare
BBR_RS14475 -0.6 -3.0 formate C-acetyltransferase compare
BBR_RS10755 -0.6 -2.1 adenylosuccinate synthase compare
BBR_RS12980 -0.6 -4.1 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS19645 -0.6 -2.6 RNA degradosome polyphosphate kinase compare
BBR_RS18550 -0.6 -3.4 universal stress protein compare
BBR_RS16960 -0.6 -1.1 transcriptional regulator MraZ compare
BBR_RS12710 -0.6 -1.7 hypothetical protein compare
BBR_RS13630 -0.6 -1.6 carbamoyl-phosphate synthase small subunit compare
BBR_RS18140 -0.6 -1.0 tRNA-Asp compare
BBR_RS15360 -0.6 -1.3 hypothetical protein compare
BBR_RS16535 -0.6 -1.6 DUF3046 domain-containing protein compare
BBR_RS11315 -0.6 -4.4 MFS transporter compare
BBR_RS12630 -0.6 -4.2 glycosyltransferase family 1 protein compare
BBR_RS15655 -0.6 -1.8 Holliday junction branch migration protein RuvA compare
BBR_RS19105 -0.6 -2.3 FmdB family transcriptional regulator compare
BBR_RS14655 -0.6 -1.7 AraC family transcriptional regulator compare
BBR_RS10785 -0.6 -4.7 MFS transporter compare
BBR_RS15240 -0.6 -2.4 LacI family DNA-binding transcriptional regulator compare
BBR_RS12755 -0.6 -4.4 DUF4365 domain-containing protein compare
BBR_RS17495 -0.6 -3.3 DUF58 domain-containing protein compare
BBR_RS15590 -0.6 -2.5 molecular chaperone DnaJ compare
BBR_RS12990 -0.6 -3.5 4-hydroxy-tetrahydrodipicolinate reductase compare
BBR_RS11500 -0.6 -3.6 glycosyltransferase family 2 protein compare
BBR_RS18245 -0.5 -3.7 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
BBR_RS15375 -0.5 -1.5 phosphoesterase compare
BBR_RS19745 -0.5 -4.4 LTA synthase family protein compare
BBR_RS15915 -0.5 -0.4 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS14670 -0.5 -3.2 excinuclease ABC subunit UvrA compare
BBR_RS21040 -0.5 -0.9 transcription factor WhiB compare
BBR_RS16245 -0.5 -1.4 ribosomal-protein-alanine N-acetyltransferase compare
BBR_RS16985 -0.5 -1.8 transcriptional repressor LexA compare
BBR_RS16905 -0.5 -1.7 hypothetical protein compare
BBR_RS12770 -0.5 -1.8 hypothetical protein compare
BBR_RS21100 -0.5 -0.9 hypothetical protein compare
BBR_RS20175 -0.5 -4.4 LacI family transcriptional regulator compare
BBR_RS20775 -0.5 -1.2 DUF4230 domain-containing protein compare
BBR_RS16020 -0.5 -1.4 hypothetical protein compare
BBR_RS11715 -0.5 -3.9 N-acetyltransferase compare
BBR_RS19370 -0.5 -1.6 type I polyketide synthase compare


Specific Phenotypes

For 4 genes in this experiment

For nutrient dropout no Glutamate in Bifidobacterium breve UCC2003

For nutrient dropout no Glutamate across organisms