Experiment set2IT019 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Sorbitol carbon source

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_1981 +2.3 7.6 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_4153 +2.2 5.4 Sensory box histidine kinase compare
Pf6N2E2_2755 +1.7 4.7 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2057 +1.7 12.0 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes compare
Pf6N2E2_5720 +1.7 13.5 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_6057 +1.6 5.5 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_2022 +1.6 10.4 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_1379 +1.3 6.9 Sensory box histidine kinase/response regulator compare
Pf6N2E2_902 +1.2 2.1 hypothetical protein compare
Pf6N2E2_3792 +1.2 7.8 Glucans biosynthesis protein G precursor compare
Pf6N2E2_6058 +1.2 6.8 FIG139976: hypothetical protein compare
Pf6N2E2_5739 +1.2 1.3 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_4335 +1.2 6.2 Uncharacterized protein ImpB compare
Pf6N2E2_3791 +1.1 8.4 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_6047 +1.1 2.1 hypothetical protein compare
Pf6N2E2_2582 +1.1 4.5 Flagellar motor switch protein FliN compare
Pf6N2E2_445 +1.1 5.5 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_2578 +1.0 1.9 Flagellar biosynthesis protein FliR compare
Pf6N2E2_4334 +1.0 6.7 Uncharacterized protein ImpC compare
Pf6N2E2_2754 +1.0 4.3 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_2597 +1.0 7.6 Flagellar regulatory protein FleQ compare
Pf6N2E2_1391 +1.0 3.9 DNA-binding response regulator, LuxR family compare
Pf6N2E2_3978 +1.0 8.4 Type I secretion system, membrane fusion protein LapC compare
Pf6N2E2_719 +1.0 2.6 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_2181 +1.0 2.2 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_1656 +1.0 2.2 hypothetical protein compare
Pf6N2E2_4339 +0.9 7.3 Uncharacterized protein ImpJ/VasE compare
Pf6N2E2_2223 +0.9 2.3 hypothetical protein compare
Pf6N2E2_3979 +0.9 7.6 Type I secretion system ATPase, LssB family LapB compare
Pf6N2E2_2438 +0.9 2.3 hypothetical protein compare
Pf6N2E2_4348 +0.9 6.0 Autotransporter adhesin compare
Pf6N2E2_4337 +0.9 7.5 Uncharacterized protein ImpI/VasC compare
Pf6N2E2_2594 +0.9 5.2 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_4340 +0.9 5.5 Outer membrane protein ImpK/VasF, OmpA/MotB domain compare
Pf6N2E2_3981 +0.9 8.2 T1SS secreted agglutinin RTX compare
Pf6N2E2_4329 +0.9 6.4 Protein ImpG/VasA compare
Pf6N2E2_5694 +0.9 5.0 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_4341 +0.9 7.8 IcmF-related protein compare
Pf6N2E2_546 +0.9 2.1 FIG00966904: hypothetical protein compare
Pf6N2E2_4347 +0.9 6.2 FIG00957151: hypothetical protein compare
Pf6N2E2_3849 +0.9 2.5 FIG00954739: hypothetical protein compare
Pf6N2E2_2579 +0.9 4.5 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_6060 +0.9 3.9 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf6N2E2_2592 +0.8 4.0 Flagellar motor switch protein FliG compare
Pf6N2E2_1625 +0.8 1.9 Ferric reductase (1.6.99.14) compare
Pf6N2E2_4963 +0.8 2.0 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_2577 +0.8 6.5 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_2262 +0.8 2.6 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf6N2E2_5749 +0.8 2.6 hypothetical protein compare
Pf6N2E2_4332 +0.8 4.3 hypothetical protein compare
Pf6N2E2_1984 +0.8 3.4 probable exported protein STY4558 compare
Pf6N2E2_5207 +0.8 1.8 hypothetical protein compare
Pf6N2E2_2593 +0.8 4.7 Flagellar M-ring protein FliF compare
Pf6N2E2_4336 +0.8 5.4 Uncharacterized protein ImpA compare
Pf6N2E2_3612 +0.8 1.6 HflK protein compare
Pf6N2E2_5697 +0.8 6.9 Flagellar hook protein FlgE compare
Pf6N2E2_3268 +0.8 5.4 Ribosome hibernation protein YhbH compare
Pf6N2E2_4344 +0.8 7.2 Serine/threonine protein kinase (EC 2.7.11.1) PpkA compare
Pf6N2E2_5691 +0.8 5.7 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_2573 +0.8 4.8 RNA polymerase sigma factor for flagellar operon compare
Pf6N2E2_1398 +0.8 3.4 Rhodanese-related sulfurtransferase compare
Pf6N2E2_4333 +0.8 5.1 Uncharacterized protein ImpD compare
Pf6N2E2_98 +0.8 1.3 putative transmembrane protein compare
Pf6N2E2_4338 +0.8 3.2 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_4541 +0.8 1.5 hypothetical protein compare
Pf6N2E2_6085 +0.8 2.4 Aha1 domain superfamily compare
Pf6N2E2_2591 +0.8 3.3 Flagellar assembly protein FliH compare
Pf6N2E2_2456 +0.8 3.9 Transcriptional regulator, LysR family compare
Pf6N2E2_1389 +0.8 5.9 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf6N2E2_5845 +0.7 4.2 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_4331 +0.7 1.6 hypothetical protein compare
Pf6N2E2_5695 +0.7 4.5 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_5613 +0.7 2.1 FIG00953674: hypothetical protein compare
Pf6N2E2_2455 +0.7 4.4 FIG00953957: hypothetical protein compare
Pf6N2E2_5225 +0.7 5.9 Lipid A 3-O-deacylase compare
Pf6N2E2_2589 +0.7 3.2 Flagellar protein FliJ compare
Pf6N2E2_4148 +0.7 4.8 Glutamate-aspartate carrier protein compare
Pf6N2E2_3659 +0.7 3.1 Protein fixF compare
Pf6N2E2_4328 +0.7 5.3 Uncharacterized protein ImpH/VasB compare
Pf6N2E2_4732 +0.7 2.0 hypothetical protein compare
Pf6N2E2_4327 +0.7 4.6 ClpB protein compare
Pf6N2E2_3664 +0.7 4.2 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_2590 +0.7 5.4 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_2018 +0.7 2.1 hypothetical protein compare
Pf6N2E2_2602 +0.7 4.0 Flagellin protein FlaA compare
Pf6N2E2_2436 +0.7 3.2 DNA-binding response regulator, LuxR family compare
Pf6N2E2_4343 +0.7 4.1 Phosphoprotein phosphatase PppA compare
Pf6N2E2_2605 +0.7 3.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_828 +0.7 2.9 Transcriptional regulator, TetR family compare
Pf6N2E2_5049 +0.7 2.2 acetyltransferase, GNAT family compare
Pf6N2E2_1434 +0.7 1.9 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_1499 +0.7 1.7 ABC transporter amino acid-binding protein compare
Pf6N2E2_482 +0.7 2.3 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_5261 +0.7 1.1 FIG00956983: hypothetical protein compare
Pf6N2E2_3179 +0.7 1.5 FIG021952: putative membrane protein compare
Pf6N2E2_1178 +0.7 2.9 3-oxoacyl-(acyl-carrier-protein) synthase compare
Pf6N2E2_1040 +0.7 1.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5573 +0.7 2.1 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_2585 +0.6 4.5 Flagellar hook-length control protein FliK compare
Pf6N2E2_331 +0.6 1.6 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_2626 +0.6 4.6 Flagellar L-ring protein FlgH compare
Pf6N2E2_3727 +0.6 2.5 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_4612 +0.6 2.9 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_2563 +0.6 5.2 FIG00953562: hypothetical protein compare
Pf6N2E2_3663 +0.6 4.3 Glycosyl transferase compare
Pf6N2E2_2788 +0.6 1.3 Transcriptional regulator, AsnC family compare
Pf6N2E2_2284 +0.6 1.0 Cell division inhibitor-related protein compare
Pf6N2E2_2580 +0.6 2.6 Flagellar biosynthesis protein FliP compare
Pf6N2E2_1095 +0.6 1.1 Opine oxidase subunit C compare
Pf6N2E2_3088 +0.6 1.5 hypothetical protein compare
Pf6N2E2_4359 +0.6 2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5696 +0.6 2.3 Flagellar basal-body rod modification protein FlgD compare
Pf6N2E2_5846 +0.6 4.7 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_2352 +0.6 1.5 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Pf6N2E2_1176 +0.6 2.6 Mll2356 protein compare
Pf6N2E2_1582 +0.6 2.2 HlyD family secretion protein compare
Pf6N2E2_5773 +0.6 2.6 Transcriptional regulator, Cro/CI family compare
Pf6N2E2_2999 +0.6 1.3 probable tail fiber assembly protein compare
Pf6N2E2_5771 +0.6 3.9 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_591 +0.6 3.8 Streptothricin acetyltransferase, Streptomyces lavendulae type compare
Pf6N2E2_2627 +0.6 3.3 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_1534 +0.6 1.3 Probable transmembrane protein compare
Pf6N2E2_2628 +0.6 2.8 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_827 +0.6 1.9 probable dioxygenase compare
Pf6N2E2_2161 +0.6 2.3 Conserved domain protein compare
Pf6N2E2_5774 +0.6 2.8 FIG00954549: hypothetical protein compare
Pf6N2E2_1199 +0.6 2.5 hypothetical protein compare
Pf6N2E2_1392 +0.6 2.6 sensor histidine kinase compare
Pf6N2E2_3328 +0.6 1.7 transcriptional regulator compare
Pf6N2E2_4054 +0.6 1.7 Osmotically inducible protein C compare
Pf6N2E2_2583 +0.6 3.5 Flagellar motor switch protein FliM compare
Pf6N2E2_2500 +0.6 2.5 Putative membrane protein compare
Pf6N2E2_3021 +0.6 1.0 hypothetical protein compare
Pf6N2E2_5705 +0.6 0.9 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4928 +0.6 1.2 Permeases of the major facilitator superfamily compare
Pf6N2E2_3421 +0.6 2.5 Transcriptional regulator ahyR/asaR family compare
Pf6N2E2_2278 +0.6 4.8 Transcription-repair coupling factor compare
Pf6N2E2_1393 +0.6 2.8 hypothetical protein compare
Pf6N2E2_2576 +0.6 4.7 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_4345 +0.6 2.2 ABC transporter, ATP-binding protein compare
Pf6N2E2_2222 +0.6 2.8 Murein-DD-endopeptidase (EC 3.4.99.-) compare
Pf6N2E2_1248 +0.5 1.2 MutT/nudix family protein compare
Pf6N2E2_4540 +0.5 1.5 hypothetical protein compare
Pf6N2E2_3588 +0.5 1.6 hypothetical protein compare
Pf6N2E2_1983 +0.5 1.2 hypothetical protein compare
Pf6N2E2_2825 +0.5 2.0 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4318 +0.5 4.3 VgrG-3 protein compare
Pf6N2E2_3763 +0.5 1.5 hypothetical protein compare
Pf6N2E2_4057 +0.5 0.7 lipoprotein, putative compare
Pf6N2E2_5183 +0.5 4.4 Paraquat-inducible protein B compare
Pf6N2E2_3219 +0.5 1.9 hypothetical protein compare
Pf6N2E2_904 +0.5 2.0 hypothetical protein compare
Pf6N2E2_5884 +0.5 3.7 Sensor histidine kinase compare
Pf6N2E2_395 +0.5 2.1 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_6046 +0.5 1.5 hypothetical protein compare
Pf6N2E2_2599 +0.5 2.6 Flagellar biosynthesis protein FliS compare
Pf6N2E2_4146 +0.5 1.9 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_6030 +0.5 2.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_2012 +0.5 1.7 hypothetical protein compare
Pf6N2E2_5785 +0.5 1.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_69 +0.5 3.3 Probable type IV pilus assembly FimV-related transmembrane protein compare
Pf6N2E2_2606 +0.5 3.0 hypothetical protein compare
Pf6N2E2_3348 +0.5 2.0 hypothetical protein compare
Pf6N2E2_5609 +0.5 3.0 DNA-binding response regulator ColR compare
Pf6N2E2_945 +0.5 1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_204 +0.5 1.0 hypothetical protein compare
Pf6N2E2_4776 +0.5 4.1 Coenzyme PQQ synthesis protein F compare
Pf6N2E2_2739 +0.5 1.7 UPF0339 protein NMA1193/NMA1859 compare
Pf6N2E2_5476 +0.5 2.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_2178 +0.5 3.4 FIG00960144: hypothetical protein compare
Pf6N2E2_2625 +0.5 2.6 Flagellar P-ring protein FlgI compare
Pf6N2E2_4369 +0.5 1.3 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_1740 +0.5 2.3 Transketolase, C-terminal section (EC 2.2.1.1) compare
Pf6N2E2_3658 +0.5 3.1 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_1110 +0.5 2.3 FIG00964414: hypothetical protein compare
Pf6N2E2_5882 +0.5 1.9 Putative membrane protein compare
Pf6N2E2_4889 +0.5 2.9 Putative transport protein compare
Pf6N2E2_4779 +0.5 2.1 Transcriptional regulator, AsnC family compare
Pf6N2E2_937 +0.5 3.0 Short-chain dehydrodenase (gene dltE) compare
Pf6N2E2_2623 +0.5 3.8 Flagellar hook-associated protein FlgK compare
Pf6N2E2_3980 +0.5 3.7 Type I secretion system, outer membrane component LapE compare
Pf6N2E2_617 +0.5 2.1 Probable glutathione S-transferase compare
Pf6N2E2_1484 +0.5 2.2 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Pf6N2E2_5182 +0.5 3.2 Paraquat-inducible protein A compare
Pf6N2E2_4084 +0.5 3.6 Transcriptional regulator compare
Pf6N2E2_969 +0.5 2.4 Putative uncharacterized protein STY4534 (Putative uncharacterized protein) compare
Pf6N2E2_4315 +0.5 4.3 Rhs-family protein compare
Pf6N2E2_5181 +0.5 3.7 Paraquat-inducible protein A compare
Pf6N2E2_3656 +0.5 2.9 Probable transcription regulator Mig-14 compare
Pf6N2E2_841 +0.5 1.3 hypothetical protein compare
Pf6N2E2_1732 +0.5 1.7 hypothetical protein compare
Pf6N2E2_927 +0.5 1.7 (AJ250023) putative polyketide synthase compare
Pf6N2E2_3908 +0.5 2.7 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2624 +0.5 3.0 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_4349 +0.5 2.3 Superfamily II DNA and RNA helicases compare
Pf6N2E2_1699 +0.5 1.3 FIG00955832: hypothetical protein compare
Pf6N2E2_1032 +0.5 0.7 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_2279 +0.5 1.8 FIG00954981: hypothetical protein compare
Pf6N2E2_1549 +0.5 2.6 Transcriptional regulator, LysR family compare
Pf6N2E2_2934 +0.5 1.3 lipoprotein, putative compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Sorbitol in Pseudomonas fluorescens FW300-N2E2

For carbon source D-Sorbitol across organisms