Experiment set2IT019 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -4.4 -4.2 O-succinylhomoserine sulfhydrylase compare
AO353_05115 -4.2 -7.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_08185 -4.1 -6.8 methionine biosynthesis protein MetW compare
AO353_12520 -4.0 -7.3 glutamate synthase compare
AO353_07220 -4.0 -6.2 anthranilate synthase compare
AO353_12090 -3.9 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
AO353_08345 -3.8 -6.4 dihydroxy-acid dehydratase compare
AO353_13070 -3.8 -7.7 phosphoserine phosphatase compare
AO353_02070 -3.8 -5.1 prephenate dehydratase compare
AO353_07230 -3.7 -13.2 anthranilate synthase compare
AO353_20665 -3.7 -9.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_20620 -3.7 -6.1 isopropylmalate isomerase compare
AO353_12070 -3.6 -7.0 imidazoleglycerol-phosphate dehydratase compare
AO353_12515 -3.5 -19.4 glutamate synthase compare
AO353_13165 -3.5 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
AO353_14505 -3.5 -10.6 ketol-acid reductoisomerase compare
AO353_07210 -3.5 -5.3 indole-3-glycerol-phosphate synthase compare
AO353_10670 -3.4 -7.3 shikimate dehydrogenase compare
AO353_12085 -3.4 -7.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_02075 -3.4 -9.8 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_12075 -3.4 -7.2 imidazole glycerol phosphate synthase subunit HisH compare
AO353_08475 -3.4 -8.4 phosphoserine phosphatase compare
AO353_10710 -3.3 -3.2 tryptophan synthase subunit beta compare
AO353_20635 -3.3 -11.3 3-isopropylmalate dehydrogenase compare
AO353_11775 -3.3 -7.3 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_05110 -3.3 -9.7 histidinol dehydrogenase compare
AO353_20625 -3.3 -4.5 3-isopropylmalate dehydratase compare
AO353_08180 -3.3 -11.9 homoserine O-acetyltransferase compare
AO353_20540 -3.3 -8.3 aromatic amino acid aminotransferase compare
AO353_08685 -3.2 -8.3 N-acetylglutamate synthase compare
AO353_07215 -3.1 -7.4 anthranilate phosphoribosyltransferase compare
AO353_12360 -3.0 -8.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_08510 -3.0 -4.6 3-phosphoglycerate dehydrogenase compare
AO353_12365 -3.0 -4.9 phosphoribosyl-AMP cyclohydrolase compare
AO353_04155 -2.9 -11.8 ornithine carbamoyltransferase compare
AO353_04105 -2.8 -7.7 argininosuccinate synthase compare
AO353_22800 -2.8 -3.7 sulfite reductase compare
AO353_19060 -2.8 -5.3 CysB family transcriptional regulator compare
AO353_09000 -2.8 -4.6 argininosuccinate lyase compare
AO353_02250 -2.8 -4.5 chorismate synthase compare
AO353_00430 -2.7 -4.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_15925 -2.7 -12.5 2-isopropylmalate synthase compare
AO353_14370 -2.7 -6.4 glucose-6-phosphate isomerase compare
AO353_14495 -2.6 -10.2 acetolactate synthase 3 catalytic subunit compare
AO353_07155 -2.6 -7.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_00495 -2.6 -3.0 DNA topoisomerase I compare
AO353_08015 -2.6 -6.6 5,10-methylenetetrahydrofolate reductase compare
AO353_14500 -2.6 -6.4 acetolactate synthase 3 regulatory subunit compare
AO353_14115 -2.6 -6.8 gamma-glutamyl kinase compare
AO353_12500 -2.6 -1.7 shikimate kinase compare
AO353_11850 -2.5 -4.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_08165 -2.5 -3.0 pyrroline-5-carboxylate reductase compare
AO353_02800 -2.4 -10.4 C4-dicarboxylate transporter conserved
AO353_06495 -2.4 -5.9 gamma-glutamyl phosphate reductase compare
AO353_12460 -2.4 -8.1 malate dehydrogenase compare
AO353_06320 -2.4 -5.2 AsnC family transcriptional regulator compare
AO353_09240 -2.4 -3.6 acetylglutamate kinase compare
AO353_15185 -2.4 -5.6 ATPase compare
AO353_16940 -2.3 -5.1 deoxycytidine triphosphate deaminase compare
AO353_14150 -2.3 -1.6 peptidylprolyl isomerase compare
AO353_02685 -2.3 -4.3 phosphoribosylglycinamide formyltransferase compare
AO353_00825 -2.3 -3.4 porin compare
AO353_20175 -2.2 -3.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_05105 -2.2 -9.8 histidinol-phosphate aminotransferase compare
AO353_03580 -2.2 -3.8 ATP-dependent DNA helicase RuvB compare
AO353_02720 -2.2 -6.0 cysteine synthase compare
AO353_25845 -2.1 -3.1 GNAT family acetyltransferase compare
AO353_11860 -2.1 -6.4 Fis family transcriptional regulator conserved
AO353_07355 -2.1 -4.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_14400 -2.1 -4.3 Fis family transcriptional regulator compare
AO353_12115 -2.1 -2.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_09285 -2.0 -9.9 reactive intermediate/imine deaminase compare
AO353_03020 -2.0 -7.3 arginine N-succinyltransferase compare
AO353_10705 -1.9 -4.3 tryptophan synthase subunit alpha compare
AO353_03615 -1.8 -3.0 cold-shock protein compare
AO353_03795 -1.8 -4.3 fumarate hydratase compare
AO353_06040 -1.8 -3.4 exodeoxyribonuclease V subunit alpha compare
AO353_11865 -1.7 -9.4 ATPase conserved
AO353_01685 -1.7 -1.6 hypothetical protein compare
AO353_04355 -1.7 -2.3 homoserine dehydrogenase compare
AO353_27650 -1.7 -4.4 cell division protein FtsK compare
AO353_12145 -1.7 -4.2 nitrogen regulation protein NR(I) compare
AO353_01375 -1.7 -5.3 phosphate acyltransferase compare
AO353_14775 -1.7 -5.4 hypothetical protein compare
AO353_21625 -1.7 -2.4 Fe/S biogenesis protein NfuA compare
AO353_11165 -1.6 -8.2 hypothetical protein compare
AO353_03590 -1.6 -3.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_06155 -1.6 -7.7 copper-transporting ATPase compare
AO353_11770 -1.6 -2.1 molecular chaperone Hsp33 compare
AO353_05080 -1.6 -8.6 sulfate adenylyltransferase compare
AO353_05690 -1.6 -3.0 SsrA-binding protein compare
AO353_23495 -1.5 -2.8 SAM-dependent methyltransferase compare
AO353_08780 -1.5 -6.2 5-formyltetrahydrofolate cyclo-ligase compare
AO353_05075 -1.5 -8.1 adenylylsulfate kinase compare
AO353_13160 -1.5 -2.3 membrane protease HflC compare
AO353_08215 -1.5 -3.8 thiazole synthase compare
AO353_09040 -1.5 -2.0 diaminopimelate epimerase compare
AO353_13640 -1.5 -3.9 histidine kinase compare
AO353_24535 -1.5 -2.7 hypothetical protein compare
AO353_04565 -1.4 -4.7 nucleoid-associated protein compare
AO353_14940 -1.4 -3.1 malate:quinone oxidoreductase compare
AO353_23620 -1.4 -2.8 hypothetical protein compare
AO353_14220 -1.4 -1.6 ribosomal large subunit pseudouridine synthase D compare
AO353_14420 -1.4 -3.1 molecular chaperone DnaK compare
AO353_16805 -1.4 -4.6 recombinase RecA compare
AO353_22520 -1.4 -2.5 hypothetical protein compare
AO353_01410 -1.3 -3.1 ribonuclease E compare
AO353_19360 -1.3 -2.4 peroxiredoxin compare
AO353_04220 -1.3 -4.9 chemotaxis protein CheY compare
AO353_16210 -1.3 -8.7 XRE family transcriptional regulator compare
AO353_11750 -1.3 -2.5 ATPase compare
AO353_12105 -1.3 -4.9 peptidase S41 compare
AO353_00610 -1.3 -2.3 cytochrome C oxidase Cbb3 compare
AO353_02300 -1.3 -2.4 MarR family transcriptional regulator compare
AO353_12710 -1.2 -1.8 thioredoxin compare
AO353_05420 -1.2 -1.8 peptide chain release factor 3 compare
AO353_20185 -1.2 -4.7 DNA-binding protein compare
AO353_04055 -1.2 -2.3 methionine--tRNA ligase compare
AO353_04175 -1.2 -2.9 glycerol uptake facilitator GlpF compare
AO353_06045 -1.2 -4.8 exodeoxyribonuclease V subunit beta compare
AO353_28425 -1.2 -3.0 TetR family transcriptional regulator compare
AO353_13140 -1.2 -3.8 tRNA dimethylallyltransferase compare
AO353_13245 -1.1 -5.7 hypothetical protein compare
AO353_15900 -1.1 -1.9 GTP-binding protein compare
AO353_05535 -1.1 -2.0 tRNA-Thr compare
AO353_03935 -1.1 -3.4 fructose-bisphosphate aldolase compare
AO353_11530 -1.1 -5.7 diguanylate cyclase compare
AO353_03585 -1.1 -2.2 ATP-dependent DNA helicase RuvA compare
AO353_10430 -1.1 -2.7 chromosome partitioning protein ParB compare
AO353_15250 -1.1 -2.4 cytochrome B compare
AO353_05415 -1.1 -1.9 hypothetical protein compare
AO353_06050 -1.0 -4.1 exodeoxyribonuclease V subunit gamma compare
AO353_04475 -1.0 -2.2 hypothetical protein compare
AO353_20630 -1.0 -5.3 SAM-dependent methyltransferase compare
AO353_10435 -1.0 -5.5 chromosome partitioning protein compare
AO353_09660 -1.0 -1.5 hypothetical protein compare
AO353_00490 -1.0 -2.2 PasA protein compare
AO353_14990 -1.0 -1.8 hypothetical protein compare
AO353_24915 -0.9 -1.6 hypothetical protein compare
AO353_25925 -0.9 -1.9 hypothetical protein compare
AO353_14405 -0.9 -6.4 ATPase compare
AO353_01780 -0.9 -5.7 heat-shock protein Hsp90 compare
AO353_15595 -0.9 -2.6 hypothetical protein compare
AO353_20200 -0.9 -2.6 peptidylprolyl isomerase compare
AO353_05130 -0.9 -1.3 anti-anti-sigma factor compare
AO353_28515 -0.9 -3.9 malate:quinone oxidoreductase compare
AO353_20565 -0.9 -1.5 tRNA-Ala compare
AO353_09235 -0.9 -4.5 phosphoglucomutase compare
AO353_04500 -0.9 -1.4 DNA repair protein RecO compare
AO353_12420 -0.9 -2.4 predicted FeS cluster maintenance protein (from data) compare
AO353_11945 -0.9 -1.0 4-oxalocrotonate tautomerase compare
AO353_03150 -0.9 -2.7 peptidase M4 compare
AO353_00835 -0.9 -3.6 transporter compare
AO353_10985 -0.9 -2.1 hypothetical protein compare
AO353_27380 -0.9 -1.7 pyocin R2, holin compare
AO353_08485 -0.9 -6.1 threonine dehydratase compare
AO353_02940 -0.8 -1.9 DNA-binding protein compare
AO353_02465 -0.8 -1.3 hypothetical protein compare
AO353_08115 -0.8 -3.3 energy transducer TonB compare
AO353_09250 -0.8 -2.0 exodeoxyribonuclease III compare
AO353_08100 -0.8 -2.0 chemotaxis protein CheY compare
AO353_26050 -0.8 -2.2 hypothetical protein compare
AO353_28055 -0.8 -2.1 hypothetical protein compare
AO353_04365 -0.8 -2.8 recombinase XerD compare
AO353_01915 -0.8 -1.5 GlcG protein compare
AO353_10055 -0.8 -5.6 DNA helicase II compare
AO353_22685 -0.8 -2.5 peroxidase compare
AO353_27415 -0.8 -2.0 hypothetical protein compare
AO353_18305 -0.8 -2.7 RNA helicase compare
AO353_14740 -0.8 -1.9 GTP-binding protein compare
AO353_07900 -0.8 -2.1 hypothetical protein compare
AO353_15725 -0.8 -2.4 hypothetical protein compare
AO353_00115 -0.8 -1.4 hypothetical protein compare
AO353_03015 -0.8 -2.6 arginine N-succinyltransferase compare
AO353_12150 -0.8 -2.4 histidine kinase compare
AO353_14060 -0.8 -2.3 hypothetical protein compare
AO353_12535 -0.8 -1.9 hypothetical protein compare
AO353_26945 -0.8 -1.5 transcriptional regulator compare
AO353_27010 -0.8 -2.1 alpha-ketoglutarate-dependent dioxygenase compare
AO353_26090 -0.7 -1.5 hypothetical protein compare
AO353_26570 -0.7 -3.1 Dihydropyrimidinase (EC 3.5.2.2) (from data) compare
AO353_10825 -0.7 -5.5 hypothetical protein compare
AO353_00650 -0.7 -1.6 cytochrome biogenesis protein compare
AO353_16810 -0.7 -2.2 recombinase RecX compare
AO353_26655 -0.7 -3.0 branched-chain amino acid aminotransferase compare
AO353_02710 -0.7 -4.6 (p)ppGpp synthetase compare
AO353_05625 -0.7 -0.9 transcription elongation factor GreA compare
AO353_02620 -0.7 -3.0 threonine-phosphate decarboxylase compare
AO353_28725 -0.7 -1.6 hypothetical protein compare
AO353_21615 -0.7 -4.7 methionine synthase compare
AO353_12930 -0.7 -2.1 GlcNAc-PI de-N-acetylase compare
AO353_15975 -0.7 -2.6 GntR family transcriptional regulator compare
AO353_27215 -0.7 -1.9 hypothetical protein compare
AO353_12240 -0.7 -2.6 histidine utilization repressor compare
AO353_16495 -0.7 -3.0 zinc metallopeptidase RseP compare
AO353_28750 -0.7 -2.4 LysR family transcriptional regulator compare
AO353_03420 -0.7 -2.7 phosphogluconate dehydratase compare
AO353_16845 -0.7 -4.0 LysR family transcriptional regulator compare
AO353_00265 -0.7 -2.0 hypothetical protein compare
AO353_08885 -0.7 -5.4 polyphosphate kinase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Malic acid disodium salt monohydrate in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Malic acid disodium salt monohydrate across organisms