Experiment set2IT018 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Glycerol carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3248 -7.8 -5.4 Probable transmembrane protein compare
Pf6N2E2_4597 -6.7 -6.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3630 -6.6 -6.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4826 -6.5 -6.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_2526 -6.3 -6.1 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_3842 -6.1 -6.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3610 -6.0 -7.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_71 -5.9 -7.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_77 -5.9 -7.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4596 -5.9 -11.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4047 -5.8 -4.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_5175 -5.7 -16.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3751 -5.7 -13.8 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4825 -5.5 -10.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_5006 -5.4 -11.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4048 -5.1 -9.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5176 -5.1 -12.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3839 -5.0 -6.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_64 -4.9 -4.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3782 -4.9 -6.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3253 -4.9 -8.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3752 -4.8 -23.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2753 -4.8 -4.7 HtrA protease/chaperone protein compare
Pf6N2E2_4810 -4.7 -9.4 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_5780 -4.6 -12.6 Periplasmic protease compare
Pf6N2E2_5574 -4.6 -14.9 Glycerol kinase (EC 2.7.1.30) compare
Pf6N2E2_4564 -4.5 -9.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3841 -4.4 -7.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3941 -4.3 -5.9 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_4279 -4.3 -16.2 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3252 -4.3 -9.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5575 -4.2 -10.0 Glycerol uptake facilitator protein compare
Pf6N2E2_5177 -4.1 -11.1 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3271 -4.1 -2.2 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4278 -4.0 -13.0 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_63 -3.8 -6.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_4803 -3.8 -2.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4362 -3.8 -4.2 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_3783 -3.8 -7.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_66 -3.7 -8.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3942 -3.7 -11.2 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5014 -3.7 -2.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_1932 -3.6 -7.8 Transcriptional regulator, IclR family compare
Pf6N2E2_4638 -3.6 -4.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_1381 -3.5 -8.6 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_3062 -3.5 -7.3 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5150 -3.4 -8.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3460 -3.4 -2.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2217 -3.4 -8.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_302 -3.3 -8.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3060 -3.3 -4.3 Outer membrane protein H precursor compare
Pf6N2E2_3940 -3.2 -10.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2073 -3.1 -9.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3932 -3.1 -3.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5579 -3.0 -7.6 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_2756 -3.0 -8.9 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_4277 -2.9 -11.1 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_4759 -2.8 -15.7 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_5527 -2.8 -4.2 Cold shock protein CspC compare
Pf6N2E2_2074 -2.8 -2.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5728 -2.6 -4.0 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_2186 -2.6 -8.6 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_3170 -2.6 -6.3 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4773 -2.5 -1.8 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_3379 -2.4 -14.0 Lactate-responsive regulator LldR in Enterobacteria, GntR family compare
Pf6N2E2_4077 -2.4 -2.1 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_4372 -2.4 -5.5 FIG00460773: hypothetical protein compare
Pf6N2E2_4276 -2.3 -7.2 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_50 -2.2 -8.0 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_1400 -2.2 -10.3 Sensory box histidine kinase/response regulator compare
Pf6N2E2_4555 -2.2 -8.5 Lysophospholipase (EC 3.1.1.5) conserved
Pf6N2E2_1402 -2.1 -7.4 hypothetical protein compare
Pf6N2E2_2899 -2.1 -6.6 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_4206 -2.0 -2.7 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_1401 -2.0 -5.7 FIG00955631: hypothetical protein compare
Pf6N2E2_2885 -2.0 -7.8 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_5255 -2.0 -10.2 Outer membrane stress sensor protease DegS compare
Pf6N2E2_5160 -2.0 -2.0 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5899 -1.9 -6.7 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_5894 -1.9 -8.3 Putative threonine efflux protein compare
Pf6N2E2_2473 -1.9 -1.9 Major outer membrane lipoprotein I compare
Pf6N2E2_5316 -1.9 -2.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2258 -1.9 -10.4 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3835 -1.9 -3.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2752 -1.9 -8.6 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4416 -1.8 -3.7 Tyrosine recombinase XerC compare
Pf6N2E2_4797 -1.8 -2.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4009 -1.8 -9.6 GGDEF domain protein compare
Pf6N2E2_5794 -1.7 -3.0 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2574 -1.6 -2.7 Flagellar synthesis regulator FleN compare
Pf6N2E2_3349 -1.6 -2.2 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5494 -1.6 -5.0 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_180 -1.5 -4.0 Transcriptional regulator, MerR family compare
Pf6N2E2_5181 -1.5 -9.0 Paraquat-inducible protein A compare
Pf6N2E2_3984 -1.5 -7.4 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_2487 -1.5 -1.6 FIG00956090: hypothetical protein compare
Pf6N2E2_3258 -1.5 -5.0 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5720 -1.4 -10.5 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_5183 -1.4 -10.2 Paraquat-inducible protein B compare
Pf6N2E2_2513 -1.4 -3.1 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2588 -1.4 -2.7 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_2218 -1.4 -4.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3257 -1.4 -4.2 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_309 -1.4 -1.2 FIG00957702: hypothetical protein compare
Pf6N2E2_2282 -1.4 -3.9 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_5219 -1.3 -6.2 FIG140336: TPR domain protein compare
Pf6N2E2_3264 -1.3 -2.1 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5001 -1.3 -2.5 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2022 -1.3 -5.4 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_2536 -1.3 -1.2 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_3251 -1.3 -8.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_5646 -1.2 -2.3 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_4479 -1.2 -3.7 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_4417 -1.2 -3.4 Protein of unknown function DUF484 compare
Pf6N2E2_504 -1.2 -2.8 DNA-binding response regulator compare
Pf6N2E2_737 -1.2 -1.9 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_5448 -1.2 -4.8 hypothetical protein compare
Pf6N2E2_4418 -1.2 -1.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3346 -1.2 -5.5 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_3833 -1.2 -2.6 hypothetical protein compare
Pf6N2E2_2471 -1.2 -7.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4994 -1.2 -3.1 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Pf6N2E2_2499 -1.1 -3.6 Competence protein ComEA helix-hairpin-helix region precursor compare
Pf6N2E2_1136 -1.1 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_4659 -1.1 -4.1 Lipoprotein, putative compare
Pf6N2E2_4993 -1.1 -2.5 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_2514 -1.1 -3.4 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_3869 -1.1 -7.2 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_5182 -1.1 -5.5 Paraquat-inducible protein A compare
Pf6N2E2_5252 -1.1 -1.4 FIG00956396: hypothetical protein compare
Pf6N2E2_248 -1.1 -6.7 hypothetical protein compare
Pf6N2E2_3613 -1.1 -5.4 GTP-binding protein HflX compare
Pf6N2E2_5553 -1.1 -6.5 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_3260 -1.1 -4.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4205 -1.1 -3.2 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2501 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_4453 -1.0 -8.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_2496 -1.0 -2.0 FIG00956575: hypothetical protein compare
Pf6N2E2_5025 -1.0 -9.0 Sensor histidine kinase compare
Pf6N2E2_3282 -1.0 -2.3 FIG005080: Possible exported protein compare
Pf6N2E2_4272 -1.0 -3.2 putative membrane protein compare
Pf6N2E2_2852 -1.0 -6.2 GGDEF domain/EAL domain protein compare
Pf6N2E2_3017 -1.0 -3.0 hypothetical protein compare
Pf6N2E2_1676 -1.0 -1.8 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_4624 -1.0 -1.0 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_3037 -1.0 -6.6 RNA polymerase sigma factor RpoS compare
Pf6N2E2_5766 -1.0 -1.8 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_1490 -0.9 -2.3 hypothetical protein compare
Pf6N2E2_5943 -0.9 -0.7 hypothetical protein compare
Pf6N2E2_4071 -0.9 -2.6 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5156 -0.9 -2.3 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3616 -0.9 -5.4 DNA mismatch repair protein MutL compare
Pf6N2E2_2465 -0.9 -1.4 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3761 -0.9 -7.6 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_2736 -0.9 -4.0 hypothetical protein compare
Pf6N2E2_3192 -0.9 -3.4 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_625 -0.9 -3.4 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_5727 -0.9 -3.8 FIG00955360: hypothetical protein compare
Pf6N2E2_4678 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_6059 -0.9 -2.1 FIG008443: hypothetical protein compare
Pf6N2E2_4478 -0.9 -4.3 FIG019278: hypothetical protein compare
Pf6N2E2_4645 -0.9 -3.4 Integral membrane protein compare
Pf6N2E2_5468 -0.9 -2.5 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_3077 -0.8 -2.5 FIG138056: a glutathione-dependent thiol reductase compare
Pf6N2E2_2488 -0.8 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3906 -0.8 -6.0 Transcription accessory protein (S1 RNA-binding domain) compare
Pf6N2E2_3725 -0.8 -2.6 FIG085779: Lipoprotein compare
Pf6N2E2_2479 -0.8 -2.5 Transcription elongation factor GreB compare
Pf6N2E2_2919 -0.8 -1.7 FIG00955830: hypothetical protein compare
Pf6N2E2_434 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_4841 -0.8 -4.2 Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15) compare
Pf6N2E2_4162 -0.8 -2.3 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5672 -0.8 -3.2 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) compare
Pf6N2E2_4160 -0.8 -1.2 Cytochrome c5 compare
Pf6N2E2_237 -0.8 -2.4 hypothetical protein compare
Pf6N2E2_5843 -0.8 -1.9 hypothetical protein compare
Pf6N2E2_922 -0.8 -1.6 FIG00794167: hypothetical protein compare
Pf6N2E2_2750 -0.7 -4.5 Putative permease PerM (= YfgO) compare
Pf6N2E2_2261 -0.7 -4.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_458 -0.7 -4.4 Protein rarD compare
Pf6N2E2_3325 -0.7 -2.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_4273 -0.7 -4.0 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_3305 -0.7 -2.3 hypothetical protein compare
Pf6N2E2_2059 -0.7 -1.9 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_5185 -0.7 -4.3 FIG00961017: hypothetical protein compare
Pf6N2E2_833 -0.7 -2.6 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf6N2E2_1189 -0.7 -3.7 Thioredoxin reductase (EC 1.8.1.9) compare
Pf6N2E2_5328 -0.7 -2.9 FIG00958649: hypothetical protein compare
Pf6N2E2_893 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_3617 -0.7 -3.2 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4067 -0.7 -4.4 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Pf6N2E2_5236 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_3285 -0.7 -2.2 Rod shape-determining protein MreD compare
Pf6N2E2_2992 -0.7 -2.6 Regulatory protein RecX compare
Pf6N2E2_1875 -0.7 -2.4 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_4764 -0.7 -3.0 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_2003 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_4415 -0.7 -1.0 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_241 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_1958 -0.7 -2.3 Predicted dinucleotide-binding enzymes compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Glycerol in Pseudomonas fluorescens FW300-N2E2

For carbon source Glycerol across organisms