Experiment set2IT018 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Tween 20 carbon source

200 most important genes:

  gene name fitness t score description  
AO353_05115 -4.0 -6.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12090 -3.8 -2.6 imidazole glycerol phosphate synthase subunit HisF compare
AO353_02070 -3.8 -4.5 prephenate dehydratase compare
AO353_27735 -3.8 -8.0 isocitrate lyase compare
AO353_20665 -3.8 -9.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_13070 -3.7 -7.9 phosphoserine phosphatase compare
AO353_07495 -3.7 -15.3 acyl-CoA dehydrogenase compare
AO353_12520 -3.7 -8.9 glutamate synthase compare
AO353_12085 -3.6 -6.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20635 -3.6 -10.1 3-isopropylmalate dehydrogenase compare
AO353_07560 -3.6 -11.1 malate synthase G compare
AO353_12515 -3.6 -18.5 glutamate synthase compare
AO353_07230 -3.6 -13.4 anthranilate synthase compare
AO353_08885 -3.5 -16.4 polyphosphate kinase compare
AO353_00505 -3.5 -4.8 3-ketoacyl-CoA thiolase compare
AO353_07220 -3.5 -7.1 anthranilate synthase compare
AO353_01375 -3.5 -6.6 phosphate acyltransferase compare
AO353_14505 -3.5 -9.7 ketol-acid reductoisomerase compare
AO353_00510 -3.5 -5.2 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_20625 -3.4 -4.0 3-isopropylmalate dehydratase compare
AO353_08185 -3.4 -9.3 methionine biosynthesis protein MetW compare
AO353_08475 -3.4 -7.9 phosphoserine phosphatase compare
AO353_20695 -3.4 -5.6 O-succinylhomoserine sulfhydrylase compare
AO353_08180 -3.4 -11.6 homoserine O-acetyltransferase compare
AO353_20620 -3.4 -6.4 isopropylmalate isomerase compare
AO353_12365 -3.3 -4.5 phosphoribosyl-AMP cyclohydrolase compare
AO353_13165 -3.3 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
AO353_05110 -3.2 -9.7 histidinol dehydrogenase compare
AO353_10670 -3.2 -7.6 shikimate dehydrogenase compare
AO353_05075 -3.2 -9.7 adenylylsulfate kinase compare
AO353_10035 -3.2 -9.1 LysR family transcriptional regulator compare
AO353_08345 -3.2 -8.6 dihydroxy-acid dehydratase compare
AO353_12070 -3.2 -8.3 imidazoleglycerol-phosphate dehydratase compare
AO353_20540 -3.1 -7.5 aromatic amino acid aminotransferase compare
AO353_12075 -3.1 -7.5 imidazole glycerol phosphate synthase subunit HisH compare
AO353_10025 -3.1 -12.8 pyruvate carboxylase subunit B compare
AO353_06520 -3.0 -7.0 murein hydrolase transporter LrgA conserved
AO353_22685 -3.0 -4.1 peroxidase compare
AO353_18220 -3.0 -14.1 isocitrate dehydrogenase conserved
AO353_02075 -3.0 -10.0 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_02710 -3.0 -7.2 (p)ppGpp synthetase compare
AO353_24130 -3.0 -3.9 hypothetical protein compare
AO353_15925 -2.9 -12.4 2-isopropylmalate synthase compare
AO353_14940 -2.9 -4.0 malate:quinone oxidoreductase compare
AO353_14500 -2.9 -5.9 acetolactate synthase 3 regulatory subunit compare
AO353_00430 -2.9 -3.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_11775 -2.9 -6.7 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_22800 -2.9 -3.3 sulfite reductase compare
AO353_08685 -2.8 -8.7 N-acetylglutamate synthase compare
AO353_07155 -2.8 -7.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_10710 -2.8 -4.3 tryptophan synthase subunit beta compare
AO353_07215 -2.8 -6.9 anthranilate phosphoribosyltransferase compare
AO353_05080 -2.8 -10.8 sulfate adenylyltransferase compare
AO353_08510 -2.8 -4.6 3-phosphoglycerate dehydrogenase compare
AO353_04155 -2.7 -11.3 ornithine carbamoyltransferase compare
AO353_09240 -2.7 -2.6 acetylglutamate kinase compare
AO353_00310 -2.7 -8.6 transaldolase compare
AO353_12360 -2.7 -8.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_00495 -2.7 -2.6 DNA topoisomerase I compare
AO353_12390 -2.7 -3.6 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_11165 -2.7 -9.8 hypothetical protein compare
AO353_14495 -2.7 -9.5 acetolactate synthase 3 catalytic subunit compare
AO353_08165 -2.6 -2.6 pyrroline-5-carboxylate reductase compare
AO353_07210 -2.6 -6.0 indole-3-glycerol-phosphate synthase compare
AO353_10030 -2.6 -10.1 pyruvate carboxylase subunit A compare
AO353_08780 -2.6 -7.3 5-formyltetrahydrofolate cyclo-ligase compare
AO353_08015 -2.6 -6.9 5,10-methylenetetrahydrofolate reductase compare
AO353_03580 -2.5 -3.4 ATP-dependent DNA helicase RuvB compare
AO353_12500 -2.5 -1.7 shikimate kinase compare
AO353_06515 -2.5 -8.7 hypothetical protein conserved
AO353_04105 -2.5 -8.0 argininosuccinate synthase compare
AO353_09000 -2.5 -4.7 argininosuccinate lyase compare
AO353_06495 -2.4 -5.7 gamma-glutamyl phosphate reductase compare
AO353_09045 -2.4 -3.2 hypothetical protein compare
AO353_14370 -2.4 -6.4 glucose-6-phosphate isomerase compare
AO353_27650 -2.3 -4.6 cell division protein FtsK compare
AO353_00865 -2.3 -9.0 phosphoenolpyruvate synthase compare
AO353_16940 -2.3 -5.1 deoxycytidine triphosphate deaminase compare
AO353_19060 -2.3 -5.0 CysB family transcriptional regulator compare
AO353_03795 -2.3 -4.3 fumarate hydratase compare
AO353_02720 -2.2 -5.7 cysteine synthase compare
AO353_14400 -2.2 -4.4 Fis family transcriptional regulator compare
AO353_14595 -2.2 -8.5 carbonate dehydratase compare
AO353_11850 -2.2 -4.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_12115 -2.2 -2.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_06040 -2.2 -3.3 exodeoxyribonuclease V subunit alpha compare
AO353_20175 -2.2 -3.7 ATP-dependent Clp protease proteolytic subunit compare
AO353_12400 -2.1 -7.2 TetR family transcriptional regulator conserved
AO353_03590 -2.1 -3.4 crossover junction endodeoxyribonuclease RuvC compare
AO353_05105 -2.1 -9.5 histidinol-phosphate aminotransferase compare
AO353_12460 -2.1 -8.0 malate dehydrogenase compare
AO353_19605 -2.1 -2.5 hypothetical protein compare
AO353_07355 -2.1 -4.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_07075 -2.0 -4.6 elongation factor Tu compare
AO353_12510 -2.0 -10.3 cell division protein compare
AO353_14115 -2.0 -5.9 gamma-glutamyl kinase compare
AO353_10455 -1.9 -1.8 tRNA modification GTPase MnmE compare
AO353_06045 -1.9 -6.0 exodeoxyribonuclease V subunit beta compare
AO353_03585 -1.9 -2.9 ATP-dependent DNA helicase RuvA compare
AO353_24340 -1.9 -2.3 TetR family transcriptional regulator compare
AO353_14420 -1.8 -3.2 molecular chaperone DnaK compare
AO353_17785 -1.8 -2.8 hypothetical protein compare
AO353_24260 -1.8 -2.2 hypothetical protein compare
AO353_14775 -1.8 -5.3 hypothetical protein compare
AO353_16195 -1.8 -1.4 DNA mismatch repair protein MutT compare
AO353_02250 -1.8 -4.0 chorismate synthase compare
AO353_07485 -1.7 -12.3 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) conserved
AO353_05625 -1.7 -2.0 transcription elongation factor GreA compare
AO353_09040 -1.7 -2.0 diaminopimelate epimerase compare
AO353_02685 -1.7 -3.5 phosphoribosylglycinamide formyltransferase compare
AO353_16805 -1.7 -4.7 recombinase RecA compare
AO353_00515 -1.7 -3.6 hypothetical protein compare
AO353_04220 -1.7 -4.7 chemotaxis protein CheY compare
AO353_08505 -1.7 -8.9 FAD-linked oxidase compare
AO353_06050 -1.7 -5.1 exodeoxyribonuclease V subunit gamma compare
AO353_12395 -1.7 -3.3 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_10705 -1.7 -4.1 tryptophan synthase subunit alpha compare
AO353_00825 -1.7 -3.2 porin compare
AO353_02040 -1.6 -2.8 integration host factor subunit beta compare
AO353_23495 -1.6 -1.7 SAM-dependent methyltransferase compare
AO353_13640 -1.6 -3.8 histidine kinase compare
AO353_05420 -1.5 -1.8 peptide chain release factor 3 compare
AO353_11090 -1.5 -7.2 NADP transhydrogenase subunit alpha conserved
AO353_03615 -1.5 -2.6 cold-shock protein compare
AO353_13140 -1.5 -4.5 tRNA dimethylallyltransferase compare
AO353_09890 -1.5 -4.4 phosphate ABC transporter ATP-binding protein compare
AO353_12105 -1.5 -5.1 peptidase S41 compare
AO353_23285 -1.4 -3.0 hypothetical protein compare
AO353_20415 -1.4 -4.1 hypothetical protein compare
AO353_11730 -1.4 -6.7 glutamate--cysteine ligase compare
AO353_11770 -1.4 -1.6 molecular chaperone Hsp33 compare
AO353_03130 -1.4 -2.7 hypothetical protein compare
AO353_19360 -1.4 -2.6 peroxiredoxin compare
AO353_08350 -1.4 -6.0 hypothetical protein compare
AO353_10320 -1.4 -2.1 hypothetical protein compare
AO353_05695 -1.4 -8.4 transcriptional regulator PdhR compare
AO353_03020 -1.4 -5.8 arginine N-succinyltransferase compare
AO353_04185 -1.4 -4.8 DeoR family transcriptional regulator compare
AO353_02640 -1.3 -1.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_17520 -1.3 -3.2 hypothetical protein compare
AO353_05140 -1.3 -5.6 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_26285 -1.3 -2.3 hypothetical protein compare
AO353_00835 -1.3 -4.9 transporter compare
AO353_01315 -1.3 -5.3 TetR family transcriptional regulator compare
AO353_04565 -1.3 -4.1 nucleoid-associated protein compare
AO353_15185 -1.3 -3.9 ATPase compare
AO353_13665 -1.3 -4.3 hypothetical protein compare
AO353_04175 -1.2 -2.9 glycerol uptake facilitator GlpF compare
AO353_08600 -1.2 -2.9 TetR family transcriptional regulator compare
AO353_28725 -1.2 -3.0 hypothetical protein compare
AO353_07340 -1.2 -8.7 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO353_03025 -1.2 -4.3 acetylornithine aminotransferase compare
AO353_10445 -1.2 -1.5 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_12420 -1.2 -2.8 predicted FeS cluster maintenance protein (from data) compare
AO353_13100 -1.2 -1.3 GTPase RsgA compare
AO353_11085 -1.2 -3.5 NAD(P) transhydrogenase compare
AO353_07345 -1.2 -9.2 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO353_07315 -1.1 -1.9 rRNA methyltransferase compare
AO353_00330 -1.1 -5.5 hypothetical protein compare
AO353_08115 -1.1 -3.8 energy transducer TonB compare
AO353_16210 -1.1 -7.5 XRE family transcriptional regulator compare
AO353_03015 -1.1 -3.3 arginine N-succinyltransferase compare
AO353_02465 -1.1 -2.1 hypothetical protein compare
AO353_15830 -1.1 -2.4 transcriptional regulator compare
AO353_03365 -1.1 -5.6 transcriptional regulator compare
AO353_07335 -1.1 -8.1 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO353_02885 -1.1 -2.0 flagellar biosynthesis protein FlgN compare
AO353_08485 -1.1 -7.2 threonine dehydratase compare
AO353_16450 -1.1 -6.5 protein-PII uridylyltransferase compare
AO353_12145 -1.1 -3.0 nitrogen regulation protein NR(I) compare
AO353_26870 -1.1 -2.3 AP endonuclease compare
AO353_19030 -1.0 -5.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_09320 -1.0 -5.3 ATP-dependent DNA helicase RecG compare
AO353_10985 -1.0 -2.0 hypothetical protein compare
AO353_10045 -1.0 -3.4 hypothetical protein compare
AO353_07460 -1.0 -1.7 DNA-binding protein compare
AO353_00850 -1.0 -3.3 ribonuclease activity regulator protein RraA compare
AO353_28425 -1.0 -2.6 TetR family transcriptional regulator compare
AO353_05135 -1.0 -5.1 toluene tolerance protein compare
AO353_00660 -1.0 -1.8 transcriptional regulator compare
AO353_00750 -1.0 -2.6 GntR family transcriptional regulator compare
AO353_11530 -1.0 -5.1 diguanylate cyclase compare
AO353_05145 -1.0 -3.6 ABC transporter permease compare
AO353_14935 -1.0 -2.6 aminopeptidase compare
AO353_16605 -1.0 -6.6 protein-L-isoaspartate O-methyltransferase compare
AO353_00875 -1.0 -4.9 transcriptional regulator compare
AO353_10435 -1.0 -5.2 chromosome partitioning protein compare
AO353_29355 -0.9 -2.5 hypothetical protein compare
AO353_16845 -0.9 -5.3 LysR family transcriptional regulator compare
AO353_06725 -0.9 -1.5 hypothetical protein compare
AO353_21615 -0.9 -5.9 methionine synthase compare
AO353_14395 -0.9 -2.6 poly(A) polymerase compare
AO353_06460 -0.9 -4.3 hypothetical protein compare
AO353_22950 -0.9 -2.1 universal stress protein UspA compare
AO353_16440 -0.9 -2.2 ArsC family transcriptional regulator compare
AO353_01550 -0.9 -3.5 hypothetical protein compare
AO353_08110 -0.9 -3.7 glutathione synthetase compare
AO353_09060 -0.9 -1.8 hypothetical protein compare
AO353_08880 -0.9 -1.7 exopolyphosphatase compare
AO353_22930 -0.9 -2.2 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Tween 20 in Pseudomonas fluorescens FW300-N2E3

For carbon source Tween 20 across organisms