Experiment set2IT018 for Shewanella loihica PV-4

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
Shew_2895 +7.3 15.0 2-dehydropantoate 2-reductase (RefSeq) compare
Shew_1809 +6.6 31.2 NAD-glutamate dehydrogenase (RefSeq) compare
Shew_1657 sucC +5.9 5.4 succinyl-CoA synthetase subunit beta (RefSeq) compare
Shew_1058 +5.2 21.9 holo-acyl-carrier-protein synthase (RefSeq) compare
Shew_0618 +5.1 6.1 hypothetical protein (RefSeq) compare
Shew_1563 +5.0 23.1 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_0225 +5.0 3.1 phosphoheptose isomerase (RefSeq) compare
Shew_3440 +4.8 3.8 prepilin peptidase (RefSeq) compare
Shew_2357 +4.8 4.5 D,D-heptose 1,7-bisphosphate phosphatase (RefSeq) compare
Shew_1437 +4.4 15.7 transcriptional regulator, TyrR (RefSeq) compare
Shew_1372 fliL +4.0 6.3 flagellar basal body-associated protein FliL (RefSeq) compare
Shew_2767 motB +3.9 5.6 flagellar motor protein MotB (RefSeq) compare
Shew_0777 +3.8 5.9 two-component response regulator (RefSeq) compare
Shew_2906 +3.8 2.1 hypothetical protein (RefSeq) compare
Shew_0470 +3.7 3.4 MATE efflux family protein (RefSeq) compare
Shew_1819 +3.6 5.9 GntR family transcriptional regulator (RefSeq) compare
Shew_1341 +3.6 6.5 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_0534 +3.5 6.4 major facilitator transporter (RefSeq) compare
Shew_1011 +3.5 12.9 citrate transporter (RefSeq) compare
Shew_0659 +3.4 12.0 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq) compare
Shew_2837 +3.4 1.9 transcription elongation factor GreA (RefSeq) compare
Shew_1926 +3.4 6.1 transketolase, central region (RefSeq) compare
Shew_1383 fliA +3.4 8.6 flagellar biosynthesis sigma factor (RefSeq) compare
Shew_1334 +3.3 8.5 3-oxoacyl-(acyl-carrier-protein) synthase (RefSeq) compare
Shew_1625 +3.3 5.8 L-serine dehydratase 1 (RefSeq) compare
Shew_2768 +3.3 12.2 flagellar motor protein PomA (RefSeq) compare
Shew_1555 +3.3 4.2 Glu/Leu/Phe/Val dehydrogenase, dimerisation region (RefSeq) compare
Shew_1325 +3.2 6.7 acetyltransferase-like protein (RefSeq) compare
Shew_1366 fliF +3.1 10.6 flagellar MS-ring protein (RefSeq) compare
Shew_3759 +3.0 21.2 imidazolonepropionase (RefSeq) compare
Shew_1354 +3.0 6.9 flagellar hook-associated protein FlgK (RefSeq) compare
Shew_1865 +3.0 8.0 phosphoenolpyruvate-protein phosphotransferase (RefSeq) compare
Shew_1405 +3.0 18.4 glycosyl transferase, group 1 (RefSeq) compare
Shew_1357 +2.9 13.2 flagellin domain-containing protein (RefSeq) compare
Shew_1322 +2.9 8.7 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1327 +2.9 6.0 hypothetical protein (RefSeq) compare
Shew_1521 +2.9 5.1 OmpA/MotB domain-containing protein (RefSeq) compare
Shew_3695 +2.8 3.3 cytidyltransferase-like protein (RefSeq) compare
Shew_1379 flhB +2.8 6.1 flagellar biosynthesis protein FlhB (RefSeq) compare
Shew_1822 +2.8 5.9 aconitate hydratase (RefSeq) compare
Shew_1319 +2.8 10.3 DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq) compare
Shew_1333 +2.7 8.9 3-oxoacyl-(acyl-carrier-protein) synthase (RefSeq) compare
Shew_1188 +2.7 5.9 riboflavin synthase subunit alpha (RefSeq) compare
Shew_1376 fliP +2.7 12.4 flagellar biosynthesis protein FliP (RefSeq) compare
Shew_1332 +2.6 12.3 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_2907 +2.6 2.1 invasion gene expression up-regulator, SirB (RefSeq) compare
Shew_2349 +2.6 7.2 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_1925 +2.6 9.5 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (RefSeq) compare
Shew_1397 +2.6 5.3 amino acid/peptide transporter (RefSeq) compare
Shew_1374 fliN +2.6 3.7 flagellar motor switch protein (RefSeq) compare
Shew_3696 +2.6 13.7 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (RefSeq) compare
Shew_3290 +2.6 4.3 Sel1 domain-containing protein (RefSeq) compare
Shew_1367 fliG +2.5 6.1 flagellar motor switch protein G (RefSeq) compare
Shew_0430 +2.5 4.0 histone family protein DNA-binding protein (RefSeq) compare
Shew_0261 +2.5 1.3 hypothetical protein (RefSeq) compare
Shew_1326 +2.4 9.3 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1329 +2.4 7.6 N-acylneuraminate-9-phosphate synthase (RefSeq) compare
Shew_1380 flhA +2.4 8.9 flagellar biosynthesis protein FlhA (RefSeq) compare
Shew_0220 +2.4 7.7 phosphoglycolate phosphatase (RefSeq) compare
Shew_1328 +2.4 13.4 acylneuraminate cytidylyltransferase (RefSeq) compare
Shew_1375 +2.4 10.9 flagellar biosynthesis protein, FliO (RefSeq) compare
Shew_3630 +2.4 2.6 bioH protein (RefSeq) compare
Shew_1531 grxA +2.4 3.9 glutaredoxin 1 (RefSeq) compare
Shew_2421 +2.3 20.6 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) compare
Shew_1318 +2.3 11.1 polysaccharide biosynthesis protein CapD (RefSeq) compare
Shew_1371 +2.3 10.1 flagellar hook-length control protein (RefSeq) compare
Shew_1331 +2.3 10.4 spore coat polysaccharide biosynthesis protein glycosyltransferase-like (RefSeq) compare
Shew_1401 +2.3 7.5 dTDP-glucose 4,6 dehydratase (RefSeq) compare
Shew_1324 +2.3 5.3 hypothetical protein (RefSeq) compare
Shew_3660 +2.3 18.2 glutathione reductase (RefSeq) compare
Shew_1362 +2.2 4.5 sigma-54 dependent trancsriptional regulator (RefSeq) compare
Shew_1317 +2.2 10.9 TPR repeat-containing protein (RefSeq) compare
Shew_1350 flgG +2.2 6.8 flagellar basal body rod protein FlgG (RefSeq) compare
Shew_1355 flgL +2.2 3.3 flagellar hook-associated protein FlgL (RefSeq) compare
Shew_1823 +2.2 2.0 putative AcnD-accessory protein PrpF (RefSeq) compare
Shew_1373 fliM +2.2 4.1 flagellar motor switch protein FliM (RefSeq) compare
Shew_1361 fliS +2.2 7.1 flagellar protein FliS (RefSeq) compare
Shew_0343 +2.2 2.0 hypothetical protein (RefSeq) compare
Shew_1359 +2.1 6.1 flagellar hook-associated 2 domain-containing protein (RefSeq) compare
Shew_3522 +2.1 2.1 hypothetical protein (RefSeq) compare
Shew_1004 +2.1 5.0 undecaprenyl pyrophosphate phosphatase (RefSeq) compare
Shew_3702 +2.1 4.0 glycosyl transferase family protein (RefSeq) compare
Shew_1348 flgE +2.1 3.0 flagellar hook protein FlgE (RefSeq) compare
Shew_1352 flgI +2.1 4.2 flagellar basal body P-ring protein (RefSeq) compare
Shew_1927 +2.0 2.3 dihydrolipoamide acetyltransferase (RefSeq) compare
Shew_1402 +2.0 5.4 glucose-1-phosphate thymidylyltransferase (RefSeq) compare
Shew_1398 +2.0 1.1 NusG antitermination factor (RefSeq) compare
Shew_2049 +2.0 3.8 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_3273 +1.9 6.5 hypothetical protein (RefSeq) compare
Shew_3710 tdh +1.9 7.1 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_2637 +1.9 1.4 PII uridylyl-transferase (RefSeq) compare
Shew_2194 +1.9 0.9 hypothetical protein (RefSeq) compare
Shew_0359 fre +1.9 11.5 FMN reductase (RefSeq) compare
Shew_1340 +1.9 5.4 FlgN family protein (RefSeq) compare
Shew_1867 +1.9 4.4 hypothetical protein (RefSeq) compare
Shew_3622 hslO +1.8 9.6 Hsp33-like chaperonin (RefSeq) compare
Shew_2572 +1.8 5.3 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_3742 +1.8 3.7 flagellar basal body-associated protein FliL-like protein (RefSeq) compare
Shew_1200 +1.8 1.4 hybrid sensory histidine kinase BarA (RefSeq) compare
Shew_1369 fliI +1.8 5.6 flagellum-specific ATP synthase (RefSeq) compare
Shew_3499 +1.7 1.7 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Shew_1363 +1.7 7.7 PAS/PAC sensor signal transduction histidine kinase (RefSeq) compare
Shew_1349 flgF +1.7 4.6 flagellar basal body rod protein FlgF (RefSeq) compare
Shew_1323 +1.7 1.7 acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II-like protein (RefSeq) compare
Shew_1407 +1.7 6.9 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1370 +1.7 1.5 flagellar export protein FliJ (RefSeq) compare
Shew_0614 +1.6 5.0 cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq) compare
Shew_2110 +1.6 5.5 hypothetical protein (RefSeq) compare
Shew_3689 +1.5 3.1 hypothetical protein (RefSeq) compare
Shew_3709 +1.5 10.1 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_1368 +1.5 5.0 flagellar assembly protein FliH (RefSeq) compare
Shew_1385 +1.5 5.2 chemotaxis phosphatase, CheZ (RefSeq) compare
Shew_3443 +1.5 1.7 hypothetical protein (RefSeq) compare
Shew_1644 +1.5 0.9 DSBA oxidoreductase (RefSeq) compare
Shew_0271 +1.5 6.6 phospholipase (RefSeq) compare
Shew_1353 flgJ +1.5 3.7 peptidoglycan hydrolase (RefSeq) compare
Shew_R0076 +1.5 1.1 tRNA-Asn (RefSeq) compare
Shew_2890 +1.5 1.4 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_2061 +1.5 1.5 radical SAM domain-containing protein (RefSeq) compare
Shew_3442 +1.5 2.0 hypothetical protein (RefSeq) compare
Shew_1365 +1.5 2.1 flagellar hook-basal body complex subunit FliE (RefSeq) compare
Shew_2573 +1.5 7.2 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_1590 +1.5 0.7 2OG-Fe(II) oxygenase (RefSeq) compare
Shew_1559 +1.5 1.2 hypothetical protein (RefSeq) compare
Shew_0330 +1.5 1.1 nifR3 family TIM-barrel protein (RefSeq) compare
Shew_2087 +1.5 3.5 hypothetical protein (RefSeq) compare
Shew_1859 +1.5 1.0 carbonate dehydratase (RefSeq) compare
Shew_1087 +1.4 3.1 hypothetical protein (RefSeq) compare
Shew_1679 +1.4 1.2 TetR family transcriptional regulator (RefSeq) compare
Shew_1347 flgD +1.4 1.8 flagellar basal body rod modification protein (RefSeq) compare
Shew_3292 +1.4 1.6 hypothetical protein (RefSeq) compare
Shew_2687 +1.4 1.3 hypothetical protein (RefSeq) compare
Shew_2498 +1.4 0.9 extracellular solute-binding protein (RefSeq) compare
Shew_0086 +1.4 10.6 electron-transferring-flavoproteindehydrogenase (RefSeq) compare
Shew_3427 +1.4 5.0 patatin (RefSeq) compare
Shew_1213 +1.4 1.4 RpoD family RNA polymerase sigma factor (RefSeq) compare
Shew_3488 +1.4 10.0 ribonuclease PH (RefSeq) compare
Shew_1078 +1.4 4.3 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_3065 +1.4 4.1 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase (RefSeq) compare
Shew_1092 +1.4 3.4 amino acid carrier protein (RefSeq) compare
Shew_2073 +1.4 0.8 lactoylglutathione lyase (RefSeq) compare
Shew_1071 +1.3 1.6 hypothetical protein (RefSeq) compare
Shew_3131 +1.3 6.0 poly(A) polymerase (RefSeq) compare
Shew_1186 +1.3 2.1 transcriptional regulator NrdR (RefSeq) compare
Shew_0795 +1.3 1.1 hypothetical protein (RefSeq) compare
Shew_3438 +1.3 10.8 type IV-A pilus assembly ATPase PilB (RefSeq) compare
Shew_2140 +1.3 1.9 hypothetical protein (RefSeq) compare
Shew_1400 +1.3 0.6 lipopolysaccharide biosynthesis protein (RefSeq) compare
Shew_3398 +1.3 1.1 cytochrome c, class I (RefSeq) compare
Shew_2407 +1.3 3.3 putative periplasmic protease (RefSeq) compare
Shew_0383 +1.3 4.2 malate dehydrogenase (RefSeq) compare
Shew_2900 +1.3 2.3 hypothetical protein (RefSeq) compare
Shew_0583 +1.3 1.8 two component transcriptional regulator (RefSeq) compare
Shew_3498 rpoZ +1.3 1.8 DNA-directed RNA polymerase subunit omega (RefSeq) compare
Shew_0885 djlA +1.3 1.1 DNA-J like membrane chaperone protein (RefSeq) compare
Shew_3072 +1.2 1.9 cold-shock protein, DNA-binding (RefSeq) compare
Shew_1183 +1.2 5.9 putative ABC transporter ATP-binding protein (RefSeq) compare
Shew_3528 +1.2 2.1 rhodanese domain-containing protein (RefSeq) compare
Shew_1059 +1.2 1.2 hypothetical protein (RefSeq) compare
Shew_2571 +1.2 5.0 propionyl-CoA carboxylase (RefSeq) compare
Shew_0326 +1.2 2.7 HAD family hydrolase (RefSeq) compare
Shew_1592 +1.2 1.7 sulphate transporter (RefSeq) compare
Shew_2476 +1.2 1.5 MotA/TolQ/ExbB proton channel (RefSeq) compare
Shew_1298 guaA +1.2 6.5 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_3267 +1.2 3.9 sodium/hydrogen exchanger (RefSeq) compare
Shew_0939 +1.2 7.7 leucyl aminopeptidase (RefSeq) compare
Shew_1278 +1.2 0.6 hypothetical protein (RefSeq) compare
Shew_0846 +1.2 1.8 nitrogen regulatory protein P-II (RefSeq) compare
Shew_0866 +1.2 1.1 arginine repressor (RefSeq) compare
Shew_3080 +1.2 1.7 thiol:disulfide interchange protein, putative (RefSeq) compare
Shew_0992 +1.2 2.0 BsuBIPstI restriction endonuclease domain-containing protein (RefSeq) compare
Shew_1337 +1.2 4.2 hypothetical protein (RefSeq) compare
Shew_0613 +1.2 2.6 cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq) compare
Shew_0620 +1.2 1.2 ion transport 2 domain-containing protein (RefSeq) compare
Shew_2219 +1.2 2.4 hypothetical protein (RefSeq) compare
Shew_3323 +1.1 1.4 lipase-like (RefSeq) compare
Shew_0648 +1.1 3.9 hypothetical protein (RefSeq) compare
Shew_0026 +1.1 2.3 hypothetical protein (RefSeq) compare
Shew_0462 +1.1 0.7 hypothetical protein (RefSeq) compare
Shew_1411 +1.1 6.1 hexapaptide repeat-containing transferase (RefSeq) compare
Shew_1602 +1.1 2.0 malonyl CoA-acyl carrier protein transacylase (RefSeq) compare
Shew_1364 +1.1 2.7 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_1812 +1.1 4.8 23S rRNA m(2)G2445 methyltransferase (RefSeq) compare
Shew_0540 +1.1 1.8 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_1564 +1.1 1.8 cold-shock DNA-binding domain-containing protein (RefSeq) compare
Shew_2173 +1.1 0.9 hypothetical protein (RefSeq) compare
Shew_0308 +1.1 3.4 hypothetical protein (RefSeq) compare
Shew_3805 +1.1 2.2 rhodanese domain-containing protein (RefSeq) compare
Shew_1289 +1.1 1.4 hypothetical protein (RefSeq) compare
Shew_3240 +1.1 1.5 two component LuxR family transcriptional regulator (RefSeq) compare
Shew_2086 +1.1 1.5 hypothetical protein (RefSeq) compare
Shew_0541 +1.1 1.9 hypothetical protein (RefSeq) compare
Shew_3439 +1.1 5.7 type II secretion system protein (RefSeq) compare
Shew_0130 +1.0 1.8 3'(2'),5'-bisphosphate nucleotidase (RefSeq) compare
Shew_1768 +1.0 1.7 periplasmic nitrate reductase NapE (RefSeq) compare
Shew_2806 +1.0 1.0 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_1673 fabG +1.0 0.8 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) compare
Shew_3473 +1.0 6.3 response regulator receiver protein (RefSeq) compare
Shew_1526 +1.0 1.2 TolA family protein (RefSeq) compare
Shew_2509 tig +1.0 1.8 trigger factor (RefSeq) compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Shewanella loihica PV-4

For carbon source Sodium succinate dibasic hexahydrate across organisms