Experiment set2IT018 for Methanococcus maripaludis JJ

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS02035 -5.6 -9.3 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS04485 -5.5 -11.2 riboflavin synthase compare
MMJJ_RS08080 -4.6 -11.8 TIGR00300 family protein compare
MMJJ_RS04475 -4.5 -6.4 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS08625 -4.4 -6.7 magnesium/cobalt transporter CorA compare
MMJJ_RS07380 -4.4 -9.3 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS06625 -4.3 -2.7 pyruvate synthase subunit PorB compare
MMJJ_RS03200 -4.2 -2.8 uroporphyrinogen-III synthase compare
MMJJ_RS06695 -4.1 -4.0 amidohydrolase compare
MMJJ_RS03895 -4.0 -4.7 hydrogenase expression/formation protein HypE compare
MMJJ_RS03760 -3.9 -4.6 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS06040 -3.9 -4.5 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03670 -3.7 -4.4 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS05575 -3.6 -5.4 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS03055 -3.6 -3.9 hypothetical protein compare
MMJJ_RS03615 -3.6 -3.4 cobalt-precorrin-8 methylmutase compare
MMJJ_RS00370 -3.5 -2.9 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS05590 -3.5 -2.7 homoserine dehydrogenase compare
MMJJ_RS05445 -3.4 -2.7 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS07000 -3.4 -2.4 TrkH family potassium uptake protein compare
MMJJ_RS04150 -3.4 -4.4 DUF5379 domain-containing protein compare
MMJJ_RS06490 -3.3 -3.2 methanogenesis marker 2 protein compare
MMJJ_RS00645 -3.3 -15.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS03840 -3.3 -3.9 DHH family phosphoesterase compare
MMJJ_RS03580 -3.3 -3.8 TIGR00303 family protein compare
MMJJ_RS04800 -3.3 -8.0 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS02200 -3.3 -11.5 chorismate pyruvate-lyase family protein compare
MMJJ_RS01600 -3.2 -3.7 radical SAM protein compare
MMJJ_RS05935 -3.2 -2.9 Era-like GTP-binding protein compare
MMJJ_RS03150 -3.2 -8.0 2-phospho-L-lactate transferase compare
MMJJ_RS06270 -3.1 -8.3 dethiobiotin synthase compare
MMJJ_RS03965 -3.1 -3.2 DNA-directed RNA polymerase subunit L compare
MMJJ_RS01960 -3.1 -7.9 glycosyltransferase family 2 protein compare
MMJJ_RS00560 -3.1 -4.8 homoisocitrate dehydrogenase compare
MMJJ_RS06930 -3.1 -3.6 type II methionyl aminopeptidase compare
MMJJ_RS01755 -3.1 -3.5 ferrous iron transport protein B compare
MMJJ_RS06510 -3.0 -4.2 LL-diaminopimelate aminotransferase compare
MMJJ_RS00210 -3.0 -2.7 DUF530 family protein compare
MMJJ_RS07415 -3.0 -3.1 polyprenyl diphosphate synthase compare
MMJJ_RS07720 -3.0 -3.3 UPF0058 family protein compare
MMJJ_RS00125 -3.0 -3.5 KEOPS complex subunit Cgi121 compare
MMJJ_RS08660 -3.0 -4.2 acetylornithine transaminase compare
MMJJ_RS05610 -3.0 -5.3 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS06375 -3.0 -5.6 UbiX family flavin prenyltransferase compare
MMJJ_RS04685 -3.0 -10.8 carbamoyltransferase HypF compare
MMJJ_RS01810 -3.0 -2.0 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS05650 -3.0 -4.0 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS07980 -3.0 -12.4 biotin synthase BioB compare
MMJJ_RS03190 -2.9 -3.9 phosphopyruvate hydratase compare
MMJJ_RS03170 -2.9 -12.8 DUF5612 domain-containing protein compare
MMJJ_RS01880 -2.9 -3.7 RlmE family RNA methyltransferase compare
MMJJ_RS00580 -2.9 -2.9 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS01690 -2.9 -4.3 methanogenesis marker 12 protein compare
MMJJ_RS00215 -2.9 -3.0 CCA tRNA nucleotidyltransferase compare
MMJJ_RS04200 -2.8 -7.2 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS07170 -2.7 -5.4 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS03620 -2.7 -6.7 DUF2097 domain-containing protein compare
MMJJ_RS00425 -2.7 -3.9 hypothetical protein compare
MMJJ_RS00275 -2.7 -3.0 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS07950 -2.7 -3.8 4Fe-4S binding protein compare
MMJJ_RS05930 -2.7 -1.8 cell division protein SepF compare
MMJJ_RS01350 -2.7 -6.8 sodium:proton antiporter compare
MMJJ_RS03110 -2.7 -4.3 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS01935 -2.7 -5.5 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS07350 -2.6 -3.8 4Fe-4S binding protein compare
MMJJ_RS05535 -2.6 -12.8 hypothetical protein compare
MMJJ_RS03095 -2.6 -3.1 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS09190 -2.6 -2.6 tryptophan synthase subunit beta compare
MMJJ_RS06855 -2.6 -2.3 DUF2104 domain-containing protein compare
MMJJ_RS07455 -2.6 -6.5 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS06860 -2.6 -5.4 hypothetical protein compare
MMJJ_RS06805 -2.6 -3.3 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS06940 -2.5 -11.0 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS05810 -2.5 -6.6 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS04730 -2.5 -3.4 tyrosine decarboxylase MfnA compare
MMJJ_RS01360 -2.5 -2.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS06750 -2.5 -2.8 homoaconitase large subunit compare
MMJJ_RS05330 -2.5 -2.4 DNA polymerase II large subunit compare
MMJJ_RS09055 -2.5 -7.5 NFACT family protein compare
MMJJ_RS00205 -2.5 -6.9 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS05380 -2.5 -1.8 hypothetical protein compare
MMJJ_RS03125 -2.4 -5.0 GMC oxidoreductase compare
MMJJ_RS05770 -2.4 -3.0 flagellar protein D compare
MMJJ_RS04155 -2.4 -7.3 hypothetical protein compare
MMJJ_RS04995 -2.4 -6.2 Tfx family DNA-binding protein compare
MMJJ_RS06885 -2.4 -2.9 EhaF family protein compare
MMJJ_RS07470 -2.4 -2.5 50S ribosome-binding GTPase compare
MMJJ_RS07785 -2.4 -2.7 fumarate reductase subunit A compare
MMJJ_RS04675 -2.4 -7.4 thiamine pyrophosphate-binding protein compare
MMJJ_RS05620 -2.4 -5.1 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS05595 -2.4 -3.4 hypothetical protein compare
MMJJ_RS06240 -2.4 -3.0 dihydropteroate synthase-like protein compare
MMJJ_RS03820 -2.4 -3.8 hydrogenase formation protein HypD compare
MMJJ_RS08870 -2.3 -1.9 2-isopropylmalate synthase compare
MMJJ_RS01200 -2.3 -3.4 PRC-barrel domain-containing protein compare
MMJJ_RS03270 -2.3 -2.5 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS01750 -2.3 -3.8 ferrous iron transport protein A compare
MMJJ_RS06840 -2.3 -4.8 nickel-dependent hydrogenase large subunit compare
MMJJ_RS04655 -2.3 -5.3 FAD-dependent oxidoreductase compare
MMJJ_RS03005 -2.3 -4.2 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS04520 -2.3 -6.2 coenzyme F430 synthase compare
MMJJ_RS06155 -2.3 -5.9 phosphatidylglycerophosphatase A compare
MMJJ_RS03245 -2.3 -2.1 UMP kinase compare
MMJJ_RS06180 -2.3 -3.7 tryptophan--tRNA ligase compare
MMJJ_RS00270 -2.3 -3.5 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS06260 -2.3 -8.1 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS08320 -2.2 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS02045 -2.2 -3.2 molybdenum cofactor guanylyltransferase compare
MMJJ_RS08340 -2.2 -6.0 archaeoflavoprotein AfpA compare
MMJJ_RS02090 -2.2 -5.9 tyramine--L-glutamate ligase compare
MMJJ_RS06010 -2.2 -6.6 hypothetical protein compare
MMJJ_RS03815 -2.2 -2.5 nascent polypeptide-associated complex protein compare
MMJJ_RS06600 -2.2 -3.1 DUF555 domain-containing protein compare
MMJJ_RS06875 -2.2 -2.7 hypothetical protein compare
MMJJ_RS09175 -2.2 -1.1 anthranilate synthase component I compare
MMJJ_RS00345 -2.2 -10.5 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS08055 -2.2 -6.2 methanogenesis marker 14 protein compare
MMJJ_RS04145 -2.1 -7.8 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS08010 -2.1 -8.5 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS00355 -2.1 -3.4 ribonuclease P protein component 4 compare
MMJJ_RS01345 -2.1 -5.2 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS04970 -2.1 -2.7 DUF655 domain-containing protein compare
MMJJ_RS06265 -2.1 -11.2 8-amino-7-oxononanoate synthase compare
MMJJ_RS05950 -2.1 -2.8 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS05155 -2.1 -6.2 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS03230 -2.1 -4.5 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS08850 -2.1 -3.2 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS07630 -2.1 -11.2 hypothetical protein compare
MMJJ_RS07245 -2.0 -4.9 amidohydrolase family protein compare
MMJJ_RS08250 -2.0 -6.5 hydrogenase maturation peptidase HycI compare
MMJJ_RS05070 -2.0 -2.6 DNA primase catalytic subunit PriS compare
MMJJ_RS08020 -2.0 -10.4 nucleotidyltransferase domain-containing protein compare
MMJJ_RS04565 -2.0 -2.6 sirohydrochlorin nickelochelatase compare
MMJJ_RS00600 -2.0 -3.4 hydroxymethylbilane synthase compare
MMJJ_RS03785 -2.0 -2.8 hypothetical protein compare
MMJJ_RS01870 -2.0 -2.2 methanogenesis marker 15 protein compare
MMJJ_RS08925 -2.0 -9.5 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS07190 -2.0 -4.2 RtcB family protein compare
MMJJ_RS08095 -1.9 -3.7 cobyric acid synthase CobQ compare
MMJJ_RS09375 -1.9 -2.2 hypothetical protein compare
MMJJ_RS06220 -1.9 -5.5 polyamine aminopropyltransferase compare
MMJJ_RS02920 -1.9 -2.7 30S ribosomal protein S27ae compare
MMJJ_RS05780 -1.9 -3.5 flagellin compare
MMJJ_RS05415 -1.9 -2.3 hypothetical protein compare
MMJJ_RS05260 -1.9 -4.9 ATP-grasp domain-containing protein compare
MMJJ_RS06390 -1.9 -1.4 NADPH-dependent F420 reductase compare
MMJJ_RS07725 -1.9 -6.0 DNA primase DnaG compare
MMJJ_RS07425 -1.8 -9.2 MBL fold metallo-hydrolase compare
MMJJ_RS04595 -1.8 -5.7 hypothetical protein compare
MMJJ_RS04700 -1.8 -6.2 deoxyhypusine synthase compare
MMJJ_RS08840 -1.8 -4.6 calcium/sodium antiporter compare
MMJJ_RS06715 -1.8 -9.6 lactaldehyde dehydrogenase compare
MMJJ_RS03650 -1.8 -7.3 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS04755 -1.8 -11.8 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMJJ_RS07585 -1.8 -8.4 DHH family phosphoesterase compare
MMJJ_RS06255 -1.8 -5.6 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS04790 -1.8 -4.0 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS07705 -1.8 -2.5 GTP-binding protein EngB compare
MMJJ_RS04980 -1.7 -4.1 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS07275 -1.7 -2.3 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS08535 -1.7 -3.5 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS05655 -1.7 -6.4 HisA/HisF family protein compare
MMJJ_RS08330 -1.7 -3.0 SufD family Fe-S cluster assembly protein compare
MMJJ_RS07410 -1.7 -3.9 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS00195 -1.7 -3.0 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS03490 -1.7 -2.1 ribonuclease VapC compare
MMJJ_RS08905 -1.7 -10.9 YcaO-related McrA-glycine thioamidation protein compare
MMJJ_RS05295 -1.7 -9.0 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS04760 -1.7 -12.3 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMJJ_RS08405 -1.7 -9.1 nickel-dependent hydrogenase large subunit compare
MMJJ_RS05720 -1.7 -3.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS08620 -1.7 -3.2 DUF373 family protein compare
MMJJ_RS07345 -1.7 -6.6 homocysteine biosynthesis protein compare
MMJJ_RS06035 -1.6 -8.4 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS03660 -1.6 -3.6 DUF447 family protein compare
MMJJ_RS09085 -1.6 -10.1 minichromosome maintenance protein MCM compare
MMJJ_RS08155 -1.6 -3.6 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS06250 -1.6 -2.3 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS08615 -1.6 -7.9 oligosaccharide repeat unit polymerase family protein compare
MMJJ_RS01875 -1.6 -4.2 global nitrogen regulator NrpR compare
MMJJ_RS00570 -1.6 -1.6 ribonuclease P compare
MMJJ_RS04750 -1.6 -7.6 5,10-methenyltetrahydromethanopterin hydrogenase compare
MMJJ_RS03845 -1.5 -3.8 translation initiation factor IF-2 compare
MMJJ_RS06015 -1.5 -7.6 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS05540 -1.5 -11.4 LysR family transcriptional regulator compare
MMJJ_RS06705 -1.5 -4.1 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS06170 -1.5 -7.2 hypothetical protein compare
MMJJ_RS00285 -1.5 -9.8 UPF0254 family protein compare
MMJJ_RS08230 -1.5 -2.3 ribose-5-phosphate isomerase RpiA compare
MMJJ_RS05995 -1.5 -1.7 ATP-binding cassette domain-containing protein compare
MMJJ_RS08035 -1.5 -6.3 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS06700 -1.5 -3.5 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS04670 -1.5 -3.2 DUF2117 domain-containing protein compare
MMJJ_RS04765 -1.5 -6.8 metal-dependent hydrolase compare
MMJJ_RS05710 -1.5 -3.7 single-stranded-DNA-specific exonuclease RecJ compare
MMJJ_RS06910 -1.5 -3.0 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS04985 -1.5 -2.4 glutamyl-tRNA reductase compare
MMJJ_RS05225 -1.5 -1.0 Gar1/Naf1 family protein compare
MMJJ_RS03865 -1.5 -2.1 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS03155 -1.5 -7.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms