Experiment set2IT017 for Acidovorax sp. GW101-3H11

Compare to:

L-Glutamine carbon source

200 most important genes:

  gene name fitness t score description  
Ac3H11_769 -6.0 -4.1 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Ac3H11_2452 -6.0 -4.1 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
Ac3H11_1525 -5.9 -21.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Ac3H11_4277 -5.5 -20.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Ac3H11_4401 -5.5 -6.5 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
Ac3H11_771 -5.5 -6.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Ac3H11_4278 -5.4 -13.9 Methionine biosynthesis protein MetW compare
Ac3H11_29 -5.4 -10.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Ac3H11_3241 -5.3 -3.7 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Ac3H11_767 -5.3 -17.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Ac3H11_3860 -5.3 -10.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Ac3H11_772 -5.2 -7.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Ac3H11_2344 -5.2 -7.9 Transcriptional activator MetR compare
Ac3H11_2345 -5.0 -16.3 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (EC 2.1.1.14) compare
Ac3H11_1528 -5.0 -25.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Ac3H11_3449 -4.9 -8.9 Shikimate kinase I (EC 2.7.1.71) compare
Ac3H11_3045 -4.9 -17.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Ac3H11_1533 -4.8 -12.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Ac3H11_1535 -4.8 -13.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Ac3H11_2403 -4.5 -5.4 Alkanesulfonate utilization operon LysR-family regulator CbI compare
Ac3H11_573 -4.5 -7.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) compare
Ac3H11_1534 -4.4 -17.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Ac3H11_4044 -4.3 -10.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Ac3H11_1527 -4.3 -8.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Ac3H11_2574 -4.2 -11.0 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Ac3H11_2925 -4.2 -9.6 Chorismate synthase (EC 4.2.3.5) compare
Ac3H11_574 -4.2 -11.0 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Ac3H11_1953 -4.2 -2.8 Transcriptional regulator compare
Ac3H11_4450 -4.0 -2.5 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Ac3H11_4092 -3.9 -2.6 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
Ac3H11_3341 -3.9 -2.7 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Ac3H11_2027 -3.8 -19.2 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) compare
Ac3H11_577 -3.5 -10.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Ac3H11_3839 -3.5 -12.0 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Ac3H11_575 -3.5 -5.2 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
Ac3H11_525 -3.4 -12.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Ac3H11_4473 -3.3 -14.9 Twitching motility protein PilT compare
Ac3H11_4034 -3.2 -9.3 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Ac3H11_4705 -3.2 -10.8 3-dehydroquinate synthase (EC 4.2.3.4) compare
Ac3H11_1695 -3.1 -18.0 ABC transporter for glutamine/isoleucine/leucine/phenylalanine/proline/serine/tyrosine, permease component 1 (from data) compare
Ac3H11_2608 -3.1 -5.6 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Ac3H11_319 -3.0 -2.0 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
Ac3H11_1694 -2.9 -23.0 ABC transporter for glutamine/isoleucine/leucine/phenylalanine/proline/serine/tyrosine, permease component 2 (from data) compare
Ac3H11_4828 -2.9 -3.4 Ferredoxin compare
Ac3H11_1692 -2.8 -13.8 ABC transporter for glutamine/isoleucine/leucine/phenylalanine/proline/serine/tyrosine, ATPase component 2 (from data) compare
Ac3H11_467 -2.8 -5.8 Thioredoxin compare
Ac3H11_1693 -2.7 -19.4 ABC transporter for glutamine/isoleucine/leucine/phenylalanine/proline/serine/tyrosine, ATPase component 1 (from data) compare
Ac3H11_4095 -2.6 -13.6 Nitrogen regulation protein NR(I) compare
Ac3H11_2575 -2.6 -3.1 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) compare
Ac3H11_4093 -2.5 -14.7 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
Ac3H11_2395 -2.5 -3.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Ac3H11_3630 -2.4 -4.5 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Ac3H11_153 -2.4 -11.7 Similar to 5-oxoprolinase (EC 3.5.2.9) and Methylhydantoinases A, B (EC 3.5.2.14), contradiction in experimental data (see Annotation) compare
Ac3H11_3496 -2.2 -1.3 Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1) compare
Ac3H11_2970 -2.2 -6.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Ac3H11_768 -2.1 -4.6 Chorismate mutase compare
Ac3H11_3838 -2.1 -9.9 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Ac3H11_4956 -2.0 -7.2 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
Ac3H11_4276 -2.0 -12.6 Probable transmembrane protein compare
Ac3H11_2464 -2.0 -6.1 ATPase component BioM of energizing module of biotin ECF transporter compare
Ac3H11_2583 -2.0 -2.2 Na(+) H(+) antiporter subunit C compare
Ac3H11_4024 -2.0 -11.4 Sugar kinases, ribokinase family compare
Ac3H11_1955 -2.0 -4.9 Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) compare
Ac3H11_3837 -1.9 -10.0 Quinolinate synthetase (EC 2.5.1.72) compare
Ac3H11_156 -1.9 -6.3 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 5 compare
Ac3H11_576 -1.9 -2.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Ac3H11_578 -1.9 -5.8 Putative sulfate permease compare
Ac3H11_3827 -1.8 -6.1 Aspartate 1-decarboxylase (EC 4.1.1.11) compare
Ac3H11_2453 -1.8 -2.0 hypothetical protein compare
Ac3H11_3081 -1.7 -2.4 Methyl-accepting chemotaxis protein compare
Ac3H11_526 -1.7 -3.6 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Ac3H11_2745 -1.7 -3.0 Transcriptional regulator, TetR family compare
Ac3H11_1650 -1.7 -2.7 FIG00537534: hypothetical protein compare
Ac3H11_3781 -1.7 -2.3 hypothetical protein compare
Ac3H11_154 -1.7 -6.4 TRAP transporter solute receptor, unknown substrate 5 compare
Ac3H11_2983 -1.7 -4.1 tRNA-Glu-TTC compare
Ac3H11_2396 -1.7 -12.6 ABC transporter for glutamine/isoleucine/leucine/phenylalanine/proline/serine/tyrosine, substrate-binding component (from data) compare
Ac3H11_683 -1.7 -2.0 HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-) compare
Ac3H11_2042 -1.6 -12.0 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Ac3H11_955 -1.6 -10.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Ac3H11_2392 -1.5 -7.7 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Ac3H11_155 -1.5 -5.2 TRAP dicarboxylate transporter, DctM subunit, unknown substrate 5 compare
Ac3H11_1556 -1.5 -5.4 HpcH/HpaI aldolase compare
Ac3H11_2600 -1.4 -10.8 Probable transmembrane protein compare
Ac3H11_1079 -1.4 -12.3 NADP-dependent malic enzyme (EC 1.1.1.40) conserved
Ac3H11_158 -1.4 -4.0 hypothetical protein possibly connected to lactam utilization and allophanate hydrolase compare
Ac3H11_2571 -1.4 -3.8 Outer membrane protein A precursor compare
Ac3H11_3240 -1.4 -2.0 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Ac3H11_2038 -1.4 -2.7 General secretion pathway protein G compare
Ac3H11_2034 -1.4 -2.6 General secretion pathway protein K compare
Ac3H11_4285 -1.4 -1.6 diguanylate cyclase compare
Ac3H11_159 -1.4 -4.5 Cyn operon transcriptional activator compare
Ac3H11_1957 -1.4 -3.7 Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4) compare
Ac3H11_4264 -1.4 -4.6 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Ac3H11_3238 -1.3 -2.2 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Ac3H11_770 -1.3 -2.1 Lysine exporter protein (LYSE/YGGA) compare
Ac3H11_4054 -1.3 -5.9 General secretion pathway protein F / Type II secretory pathway, component PulF compare
Ac3H11_207 -1.3 -4.6 FIG137360: hypothetical protein compare
Ac3H11_132 -1.3 -10.7 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Ac3H11_819 -1.3 -2.9 transcriptional regulators, TraR/DksA family compare
Ac3H11_4241 -1.3 -1.3 hypothetical protein compare
Ac3H11_2171 -1.3 -1.6 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Ac3H11_2492 -1.3 -3.7 FIG004453: protein YceG like compare
Ac3H11_3692 -1.3 -2.6 HupE-UreJ family metal transporter compare
Ac3H11_2036 -1.2 -1.2 General secretion pathway protein I compare
Ac3H11_1453 -1.2 -3.2 Preprotein translocase subunit SecG (TC 3.A.5.1.1) compare
Ac3H11_2320 -1.2 -7.0 Transcriptional regulator, XRE family compare
Ac3H11_3233 -1.2 -1.6 hypothetical protein compare
Ac3H11_2120 -1.2 -2.4 C-type cytochrome biogenesis protein ResA (thioredoxin) compare
Ac3H11_2454 -1.2 -4.3 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Ac3H11_4185 -1.2 -1.2 hypothetical protein compare
Ac3H11_2805 -1.2 -3.2 IncF plasmid conjugative transfer pilus assembly protein TraK compare
Ac3H11_3155 -1.2 -4.3 Putative alkanesulfonate metabolism utilization regulator compare
Ac3H11_1044 -1.2 -3.6 tRNA-Leu-TAG compare
Ac3H11_3859 -1.2 -3.8 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Ac3H11_2030 -1.2 -5.2 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) compare
Ac3H11_3818 -1.1 -1.4 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Ac3H11_1690 -1.1 -4.1 Phosphate transport regulator (distant homolog of PhoU) compare
Ac3H11_1956 -1.1 -3.9 Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4) compare
Ac3H11_2035 -1.1 -1.7 General secretion pathway protein J compare
Ac3H11_934 -1.1 -6.0 Cell division trigger factor (EC 5.2.1.8) compare
Ac3H11_1681 -1.1 -3.5 Similar to cobalamin biosynthesis protein CbiB compare
Ac3H11_3271 -1.1 -4.1 hypothetical protein compare
Ac3H11_4549 -1.0 -1.5 Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1) compare
Ac3H11_4950 -1.0 -2.6 COG0662: Mannose-6-phosphate isomerase compare
Ac3H11_277 -1.0 -4.9 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
Ac3H11_5012 -1.0 -1.6 ribonuclease H compare
Ac3H11_157 -1.0 -4.6 TRAP transporter solute receptor, unknown substrate 5 compare
Ac3H11_458 -1.0 -2.7 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Ac3H11_888 -1.0 -1.1 hypothetical protein compare
Ac3H11_3833 -0.9 -1.8 probable membrane protein YPO2051 compare
Ac3H11_4771 -0.9 -4.6 Glutamate 5-kinase (EC 2.7.2.11) compare
Ac3H11_457 -0.9 -1.7 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Ac3H11_3760 -0.9 -2.8 hypothetical protein compare
Ac3H11_3380 -0.9 -1.0 transcriptional regulator, MarR family compare
Ac3H11_781 -0.9 -1.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Ac3H11_2416 -0.9 -4.3 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Ac3H11_412 -0.8 -3.0 3'-to-5' exoribonuclease RNase R compare
Ac3H11_1621 -0.8 -3.3 FIG111991: hypothetical protein compare
Ac3H11_1248 -0.8 -1.9 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
Ac3H11_268 -0.8 -2.4 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Ac3H11_4017 -0.8 -2.2 fragment of conserved hypothetical protein compare
Ac3H11_3959 -0.8 -2.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Ac3H11_4967 -0.8 -2.8 hypothetical protein compare
Ac3H11_4061 -0.8 -7.0 Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30) compare
Ac3H11_2456 -0.8 -5.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Ac3H11_505 -0.8 -3.3 Transcriptional regulator, TetR family compare
Ac3H11_4016 -0.8 -4.6 CcsA-related protein compare
Ac3H11_4060 -0.8 -6.8 Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30) compare
Ac3H11_3826 -0.8 -2.2 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Ac3H11_2029 -0.8 -2.8 General secretion pathway protein E / Type II secretion cytoplasmic ATP binding protein (PulE, ATPase) compare
Ac3H11_2801 -0.8 -0.9 FIG003465: Conjugative transfer outer membrane protein compare
Ac3H11_1679 -0.8 -2.0 Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) compare
Ac3H11_4058 -0.8 -4.9 required for efflux of an amino acid polymer (from data) compare
Ac3H11_1325 -0.8 -1.2 Mg2+ and Co2+ transporters compare
Ac3H11_3589 -0.8 -1.0 FIG00538094: hypothetical protein compare
Ac3H11_2593 -0.8 -2.0 Protein crcB homolog compare
Ac3H11_2601 -0.8 -4.4 Nicotinate phosphoribosyltransferase (EC 2.4.2.11) compare
Ac3H11_1529 -0.8 -3.8 hypothetical protein compare
Ac3H11_4198 -0.8 -1.3 hypothetical protein compare
Ac3H11_3057 -0.8 -1.9 hypothetical protein compare
Ac3H11_4059 -0.8 -6.6 Lipid A export ATP-binding/permease protein MsbA compare
Ac3H11_861 -0.7 -3.8 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Ac3H11_2157 -0.7 -2.0 hypothetical protein compare
Ac3H11_2509 -0.7 -1.0 Response regulator compare
Ac3H11_1115 -0.7 -0.9 Histidine triad (HIT) nucleotide-binding protein, similarity with At5g48545 and yeast YDL125C (HNT1) compare
Ac3H11_2302 -0.7 -2.2 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
Ac3H11_3824 -0.7 -3.5 L-aspartate oxidase (EC 1.4.3.16) compare
Ac3H11_2273 -0.7 -3.2 hypothetical protein compare
Ac3H11_2973 -0.7 -3.5 Cytochrome c4 compare
Ac3H11_4839 -0.7 -6.6 Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) compare
Ac3H11_3060 -0.7 -0.9 hypothetical protein compare
Ac3H11_3311 -0.7 -1.2 Adenosylhomocysteinase (EC 3.3.1.1) compare
Ac3H11_3101 -0.7 -0.7 protein of unknown function DUF1234 compare
Ac3H11_89 -0.7 -2.6 hypothetical protein compare
Ac3H11_2891 -0.7 -0.9 hypothetical protein compare
Ac3H11_3890 -0.7 -4.5 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
Ac3H11_3500 -0.7 -1.2 hypothetical protein compare
Ac3H11_3669 -0.7 -6.1 Protein phosphatase 2C-like compare
Ac3H11_1090 -0.7 -5.1 Gamma-glutamyltranspeptidase (EC 2.3.2.2) compare
Ac3H11_733 -0.7 -2.9 serine/threonine protein kinase compare
Ac3H11_2002 -0.7 -2.0 C4-type zinc finger protein, DksA/TraR family compare
Ac3H11_3971 -0.7 -5.4 Ferric iron ABC transporter, permease protein compare
Ac3H11_348 -0.7 -2.1 hypothetical protein compare
Ac3H11_1569 -0.7 -3.7 Translation elongation factor LepA compare
Ac3H11_3502 -0.7 -0.8 hypothetical protein compare
Ac3H11_2661 -0.7 -1.0 hypothetical protein compare
Ac3H11_3459 -0.7 -5.0 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Ac3H11_4232 -0.7 -1.3 Outer membrane protein romA compare
Ac3H11_2722 -0.7 -2.0 putative dioxygenase compare
Ac3H11_3308 -0.6 -3.7 ATP-dependent DNA helicase RecQ compare
Ac3H11_3972 -0.6 -3.3 Ferric iron ABC transporter, ATP-binding protein compare
Ac3H11_4845 -0.6 -4.1 Transcriptional regulator, TetR family compare
Ac3H11_532 -0.6 -3.7 Predicted Lactate-responsive regulator, IclR family compare
Ac3H11_4304 -0.6 -1.1 Rhodanese-like domain protein compare
Ac3H11_1904 -0.6 -0.7 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) compare
Ac3H11_3087 -0.6 -1.1 P-hydroxylaminobenzoate lyase compare
Ac3H11_926 -0.6 -2.3 Phytoene desaturase, pro-zeta-carotene producing (EC 1.-.-.-) compare
Ac3H11_2927 -0.6 -4.0 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Ac3H11_4728 -0.6 -2.8 FIG00349391: hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Glutamine in Acidovorax sp. GW101-3H11

For carbon source L-Glutamine across organisms