Experiment set2IT016 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Glycerol carbon source

200 most important genes:

  gene name fitness t score description  
AO353_07290 -4.7 -8.9 mannose-1-phosphate guanylyltransferase compare
AO353_20695 -4.6 -4.4 O-succinylhomoserine sulfhydrylase compare
AO353_02100 -4.3 -4.2 phosphoglycolate phosphatase compare
AO353_13070 -4.2 -6.9 phosphoserine phosphatase compare
AO353_05115 -4.0 -8.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20665 -3.9 -10.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_20635 -3.8 -10.7 3-isopropylmalate dehydrogenase compare
AO353_12070 -3.8 -7.7 imidazoleglycerol-phosphate dehydratase compare
AO353_07230 -3.8 -14.3 anthranilate synthase compare
AO353_02070 -3.7 -5.7 prephenate dehydratase compare
AO353_02075 -3.6 -9.3 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08185 -3.6 -9.1 methionine biosynthesis protein MetW compare
AO353_14505 -3.6 -10.6 ketol-acid reductoisomerase compare
AO353_20625 -3.6 -4.2 3-isopropylmalate dehydratase compare
AO353_07210 -3.6 -5.4 indole-3-glycerol-phosphate synthase compare
AO353_12085 -3.6 -8.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_07220 -3.6 -8.5 anthranilate synthase compare
AO353_12515 -3.5 -19.6 glutamate synthase compare
AO353_26900 -3.5 -7.1 glycerate kinase compare
AO353_12520 -3.5 -10.8 glutamate synthase compare
AO353_20540 -3.5 -8.3 aromatic amino acid aminotransferase compare
AO353_13165 -3.4 -5.2 ATP phosphoribosyltransferase regulatory subunit compare
AO353_08345 -3.4 -9.0 dihydroxy-acid dehydratase compare
AO353_08180 -3.4 -12.6 homoserine O-acetyltransferase compare
AO353_08685 -3.3 -8.0 N-acetylglutamate synthase compare
AO353_12090 -3.3 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12360 -3.3 -8.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_10710 -3.3 -3.2 tryptophan synthase subunit beta compare
AO353_14500 -3.2 -5.7 acetolactate synthase 3 regulatory subunit compare
AO353_08510 -3.2 -4.3 3-phosphoglycerate dehydrogenase compare
AO353_07155 -3.1 -7.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_20620 -3.1 -7.4 isopropylmalate isomerase compare
AO353_00310 -3.1 -9.2 transaldolase compare
AO353_09240 -3.1 -2.1 acetylglutamate kinase compare
AO353_24130 -3.0 -4.1 hypothetical protein compare
AO353_14400 -3.0 -4.1 Fis family transcriptional regulator compare
AO353_04180 -3.0 -6.4 glycerol kinase compare
AO353_15925 -3.0 -13.3 2-isopropylmalate synthase compare
AO353_10025 -3.0 -14.4 pyruvate carboxylase subunit B compare
AO353_12075 -3.0 -7.7 imidazole glycerol phosphate synthase subunit HisH compare
AO353_05110 -3.0 -11.0 histidinol dehydrogenase compare
AO353_10670 -2.9 -7.3 shikimate dehydrogenase compare
AO353_12365 -2.9 -5.0 phosphoribosyl-AMP cyclohydrolase compare
AO353_08475 -2.9 -8.7 phosphoserine phosphatase compare
AO353_07215 -2.9 -8.0 anthranilate phosphoribosyltransferase compare
AO353_04190 -2.9 -2.7 glycerol-3-phosphate dehydrogenase compare
AO353_14495 -2.8 -9.9 acetolactate synthase 3 catalytic subunit compare
AO353_04155 -2.8 -12.0 ornithine carbamoyltransferase compare
AO353_02300 -2.8 -3.8 MarR family transcriptional regulator compare
AO353_03580 -2.7 -3.7 ATP-dependent DNA helicase RuvB compare
AO353_14370 -2.7 -7.3 glucose-6-phosphate isomerase compare
AO353_12500 -2.7 -1.8 shikimate kinase compare
AO353_08885 -2.7 -16.2 polyphosphate kinase compare
AO353_04105 -2.7 -8.4 argininosuccinate synthase compare
AO353_03420 -2.7 -6.0 phosphogluconate dehydratase compare
AO353_10030 -2.6 -10.9 pyruvate carboxylase subunit A compare
AO353_02250 -2.6 -4.6 chorismate synthase compare
AO353_02685 -2.6 -4.5 phosphoribosylglycinamide formyltransferase compare
AO353_05715 -2.6 -10.9 lactate utilization protein B/C compare
AO353_22800 -2.5 -3.7 sulfite reductase compare
AO353_19060 -2.5 -5.7 CysB family transcriptional regulator compare
AO353_08165 -2.5 -3.3 pyrroline-5-carboxylate reductase compare
AO353_05705 -2.5 -8.6 oxidoreductase conserved
AO353_10035 -2.4 -9.2 LysR family transcriptional regulator compare
AO353_08015 -2.4 -7.3 5,10-methylenetetrahydrofolate reductase compare
AO353_06515 -2.4 -9.0 hypothetical protein conserved
AO353_24260 -2.4 -3.1 hypothetical protein compare
AO353_08780 -2.3 -7.9 5-formyltetrahydrofolate cyclo-ligase compare
AO353_14115 -2.2 -6.8 gamma-glutamyl kinase compare
AO353_17410 -2.2 -3.3 arylsulfate sulfotransferase compare
AO353_05700 -2.2 -8.9 L-lactate permease conserved
AO353_06495 -2.2 -6.0 gamma-glutamyl phosphate reductase compare
AO353_05720 -2.2 -11.2 4Fe-4S ferredoxin conserved
AO353_05710 -2.1 -11.7 (Fe-S)-binding protein conserved
AO353_11850 -2.1 -4.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_12345 -2.1 -2.8 twin-arginine protein translocation system subunit TatC compare
AO353_02320 -2.1 -6.7 allantoinase compare
AO353_11165 -2.1 -9.7 hypothetical protein compare
AO353_03020 -2.0 -7.8 arginine N-succinyltransferase compare
AO353_22305 -2.0 -3.2 LysR family transcriptional regulator compare
AO353_03590 -2.0 -3.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_09000 -2.0 -5.6 argininosuccinate lyase compare
AO353_12115 -2.0 -2.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_05080 -2.0 -10.4 sulfate adenylyltransferase compare
AO353_00750 -1.9 -4.5 GntR family transcriptional regulator compare
AO353_03425 -1.9 -9.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_14775 -1.9 -6.2 hypothetical protein compare
AO353_03360 -1.9 -8.0 glucose-6-phosphate dehydrogenase compare
AO353_06520 -1.8 -6.2 murein hydrolase transporter LrgA conserved
AO353_20175 -1.8 -3.7 ATP-dependent Clp protease proteolytic subunit compare
AO353_06045 -1.8 -6.1 exodeoxyribonuclease V subunit beta compare
AO353_01550 -1.8 -5.7 hypothetical protein compare
AO353_06040 -1.7 -3.4 exodeoxyribonuclease V subunit alpha compare
AO353_10945 -1.7 -2.8 cytochrome C compare
AO353_02720 -1.7 -5.2 cysteine synthase compare
AO353_04175 -1.7 -3.1 glycerol uptake facilitator GlpF compare
AO353_14420 -1.6 -3.4 molecular chaperone DnaK compare
AO353_15410 -1.6 -2.4 hypothetical protein compare
AO353_05105 -1.6 -8.2 histidinol-phosphate aminotransferase compare
AO353_05075 -1.6 -8.1 adenylylsulfate kinase compare
AO353_19030 -1.6 -7.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_27650 -1.6 -4.6 cell division protein FtsK compare
AO353_01915 -1.6 -2.0 GlcG protein compare
AO353_00825 -1.6 -3.5 porin compare
AO353_05535 -1.6 -3.5 tRNA-Thr compare
AO353_03775 -1.6 -7.0 pyruvate kinase compare
AO353_10705 -1.6 -4.0 tryptophan synthase subunit alpha compare
AO353_16940 -1.5 -4.9 deoxycytidine triphosphate deaminase compare
AO353_05145 -1.5 -5.2 ABC transporter permease compare
AO353_20095 -1.5 -5.3 histidine kinase compare
AO353_03430 -1.5 -3.2 methylglyoxal synthase compare
AO353_03235 -1.5 -7.6 glutamate-pyruvate aminotransferase compare
AO353_11770 -1.5 -2.0 molecular chaperone Hsp33 compare
AO353_12420 -1.5 -3.3 predicted FeS cluster maintenance protein (from data) compare
AO353_01080 -1.5 -7.7 hypothetical protein compare
AO353_05690 -1.5 -3.1 SsrA-binding protein compare
AO353_05625 -1.4 -1.6 transcription elongation factor GreA compare
AO353_05150 -1.4 -4.4 ABC transporter ATP-binding protein compare
AO353_06850 -1.4 -4.2 MFS transporter compare
AO353_05130 -1.4 -1.8 anti-anti-sigma factor compare
AO353_08485 -1.4 -9.4 threonine dehydratase compare
AO353_10730 -1.4 -1.5 hypothetical protein compare
AO353_28425 -1.4 -3.5 TetR family transcriptional regulator compare
AO353_05140 -1.4 -6.2 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_03630 -1.3 -8.5 porin compare
AO353_20185 -1.3 -5.1 DNA-binding protein compare
AO353_09285 -1.3 -7.2 reactive intermediate/imine deaminase compare
AO353_03615 -1.3 -2.4 cold-shock protein compare
AO353_19145 -1.3 -3.1 protease HtpX compare
AO353_05135 -1.2 -6.3 toluene tolerance protein compare
AO353_02195 -1.2 -3.6 spermidine synthase compare
AO353_13640 -1.2 -3.5 histidine kinase compare
AO353_12510 -1.2 -7.6 cell division protein compare
AO353_13140 -1.2 -4.4 tRNA dimethylallyltransferase compare
AO353_14990 -1.2 -2.0 hypothetical protein compare
AO353_17405 -1.2 -4.8 glutamine amidotransferase compare
AO353_20565 -1.2 -1.8 tRNA-Ala compare
AO353_12105 -1.2 -4.7 peptidase S41 compare
AO353_00650 -1.2 -2.2 cytochrome biogenesis protein compare
AO353_15250 -1.2 -2.7 cytochrome B compare
AO353_14590 -1.2 -1.7 serine kinase/phosphatase compare
AO353_27685 -1.1 -4.0 cold-shock protein compare
AO353_18540 -1.1 -2.3 pseudouridine synthase compare
AO353_21750 -1.1 -1.8 peptidylprolyl isomerase compare
AO353_00330 -1.1 -5.7 hypothetical protein compare
AO353_05420 -1.1 -1.7 peptide chain release factor 3 compare
AO353_07355 -1.1 -4.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_10085 -1.1 -2.2 pyridoxamine kinase compare
AO353_19530 -1.1 -1.9 quinohemoprotein amine dehydrogenase compare
AO353_04220 -1.1 -4.2 chemotaxis protein CheY compare
AO353_06050 -1.0 -4.3 exodeoxyribonuclease V subunit gamma compare
AO353_08505 -1.0 -6.6 FAD-linked oxidase compare
AO353_07315 -1.0 -1.7 rRNA methyltransferase compare
AO353_12130 -1.0 -3.5 preprotein translocase subunit SecB compare
AO353_10455 -1.0 -1.5 tRNA modification GTPase MnmE compare
AO353_13665 -1.0 -4.4 hypothetical protein compare
AO353_00515 -1.0 -2.5 hypothetical protein compare
AO353_22520 -1.0 -2.0 hypothetical protein compare
AO353_09705 -1.0 -2.0 hypothetical protein compare
AO353_14485 -1.0 -1.3 pseudouridine synthase compare
AO353_10435 -1.0 -5.7 chromosome partitioning protein compare
AO353_09045 -1.0 -1.7 hypothetical protein compare
AO353_17205 -1.0 -2.1 beta-ketoadipyl CoA thiolase compare
AO353_22810 -1.0 -1.3 hypothetical protein compare
AO353_22645 -1.0 -2.0 hypothetical protein compare
AO353_18285 -1.0 -2.4 3-phosphoglycerate kinase compare
AO353_27675 -1.0 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_10040 -0.9 -5.0 transcriptional regulator compare
AO353_19610 -0.9 -2.1 hypothetical protein compare
AO353_03015 -0.9 -3.1 arginine N-succinyltransferase compare
AO353_23245 -0.9 -1.9 DNA-3-methyladenine glycosylase compare
AO353_27435 -0.9 -1.7 hypothetical protein compare
AO353_07525 -0.9 -6.6 biotin synthase compare
AO353_02810 -0.9 -4.5 histidine kinase compare
AO353_02020 -0.9 -2.6 hypothetical protein compare
AO353_15905 -0.9 -3.7 outer membrane protein assembly factor BamB compare
AO353_03025 -0.9 -3.1 acetylornithine aminotransferase compare
AO353_20510 -0.9 -1.6 amidase compare
AO353_14405 -0.9 -5.5 ATPase compare
AO353_08470 -0.9 -2.5 RNA pyrophosphohydrolase compare
AO353_04565 -0.9 -3.3 nucleoid-associated protein compare
AO353_02940 -0.9 -1.7 DNA-binding protein compare
AO353_10430 -0.9 -1.9 chromosome partitioning protein ParB compare
AO353_04170 -0.9 -4.0 hypothetical protein compare
AO353_02710 -0.9 -5.5 (p)ppGpp synthetase compare
AO353_08115 -0.9 -3.4 energy transducer TonB compare
AO353_03585 -0.9 -1.7 ATP-dependent DNA helicase RuvA compare
AO353_16810 -0.8 -2.4 recombinase RecX compare
AO353_08880 -0.8 -1.7 exopolyphosphatase compare
AO353_23495 -0.8 -1.6 SAM-dependent methyltransferase compare
AO353_10055 -0.8 -5.8 DNA helicase II compare
AO353_06460 -0.8 -4.1 hypothetical protein compare
AO353_26090 -0.8 -2.0 hypothetical protein compare
AO353_03290 -0.8 -1.5 peptide deformylase compare
AO353_02005 -0.8 -1.3 hypothetical protein compare
AO353_15975 -0.8 -2.9 GntR family transcriptional regulator compare
AO353_10725 -0.8 -1.1 dodecin flavoprotein compare
AO353_10445 -0.8 -1.4 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_23215 -0.8 -2.2 calpastatin compare
AO353_05800 -0.8 -2.9 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Glycerol in Pseudomonas fluorescens FW300-N2E3

For carbon source Glycerol across organisms