Experiment set2IT015 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Ethanol carbon source

200 most important genes:

  gene name fitness t score description  
AO353_22360 -3.6 -2.5 ABC transporter ATP-binding protein compare
AO353_22375 -3.6 -2.4 cytochrome c-550 PedF compare
AO353_12365 -3.3 -3.2 phosphoribosyl-AMP cyclohydrolase compare
AO353_22415 -3.3 -3.2 alcohol dehydrogenase compare
AO353_22420 -3.1 -4.7 histidine kinase compare
AO353_09440 -2.9 -2.8 type VI secretion protein compare
AO353_15295 -2.9 -6.2 division/cell wall cluster transcriptional repressor MraZ compare
AO353_20665 -2.8 -8.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_05115 -2.8 -8.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_09235 -2.8 -5.6 phosphoglucomutase compare
AO353_12085 -2.7 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12090 -2.7 -2.6 imidazole glycerol phosphate synthase subunit HisF compare
AO353_08185 -2.7 -8.0 methionine biosynthesis protein MetW compare
AO353_12950 -2.7 -6.0 polymerase compare
AO353_20635 -2.7 -9.7 3-isopropylmalate dehydrogenase compare
AO353_01975 -2.6 -4.7 glycosyl transferase compare
AO353_02025 -2.6 -8.6 mannose-1-phosphate guanyltransferase compare
AO353_22355 -2.5 -7.4 multidrug ABC transporter permease conserved
AO353_06040 -2.5 -2.4 exodeoxyribonuclease V subunit alpha compare
AO353_07210 -2.5 -4.7 indole-3-glycerol-phosphate synthase compare
AO353_27735 -2.4 -6.6 isocitrate lyase compare
AO353_08465 -2.4 -12.5 phosphoenolpyruvate-protein phosphotransferase compare
AO353_12935 -2.3 -2.8 glycosyltransferase compare
AO353_12515 -2.3 -14.8 glutamate synthase compare
AO353_08180 -2.3 -10.0 homoserine O-acetyltransferase compare
AO353_22365 -2.3 -5.6 hypothetical protein conserved
AO353_01970 -2.3 -8.0 hypothetical protein compare
AO353_05225 -2.3 -12.9 hypothetical protein compare
AO353_16835 -2.3 -2.7 LuxR family transcriptional regulator compare
AO353_20175 -2.2 -3.0 ATP-dependent Clp protease proteolytic subunit compare
AO353_12070 -2.2 -7.1 imidazoleglycerol-phosphate dehydratase compare
AO353_08345 -2.2 -7.3 dihydroxy-acid dehydratase compare
AO353_14505 -2.2 -9.1 ketol-acid reductoisomerase compare
AO353_20625 -2.2 -3.8 3-isopropylmalate dehydratase compare
AO353_00430 -2.2 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_07215 -2.1 -5.7 anthranilate phosphoribosyltransferase compare
AO353_12520 -2.1 -8.6 glutamate synthase compare
AO353_10025 -2.1 -10.7 pyruvate carboxylase subunit B compare
AO353_19060 -2.1 -4.4 CysB family transcriptional regulator compare
AO353_07560 -2.1 -9.8 malate synthase G compare
AO353_13165 -2.1 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
AO353_02000 -2.1 -3.4 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_05110 -2.1 -7.8 histidinol dehydrogenase compare
AO353_12500 -2.1 -1.4 shikimate kinase compare
AO353_14400 -2.1 -3.4 Fis family transcriptional regulator compare
AO353_07230 -2.1 -11.6 anthranilate synthase compare
AO353_22385 -2.1 -9.3 dehydrogenase conserved
AO353_22350 -2.0 -4.4 LuxR family transcriptional regulator compare
AO353_08685 -2.0 -7.0 N-acetylglutamate synthase compare
AO353_07155 -2.0 -5.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_10710 -2.0 -3.8 tryptophan synthase subunit beta compare
AO353_02710 -2.0 -7.4 (p)ppGpp synthetase compare
AO353_16530 -2.0 -2.3 ribonuclease HII compare
AO353_22645 -2.0 -2.6 hypothetical protein compare
AO353_10030 -2.0 -8.0 pyruvate carboxylase subunit A compare
AO353_03585 -2.0 -2.9 ATP-dependent DNA helicase RuvA compare
AO353_07290 -1.9 -7.9 mannose-1-phosphate guanylyltransferase compare
AO353_03590 -1.9 -2.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_22380 -1.9 -5.4 amino acid ABC transporter substrate-binding protein conserved
AO353_14370 -1.9 -5.2 glucose-6-phosphate isomerase compare
AO353_22370 -1.9 -3.1 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_04155 -1.9 -8.5 ornithine carbamoyltransferase compare
AO353_03630 -1.9 -9.0 porin compare
AO353_02005 -1.9 -2.5 hypothetical protein compare
AO353_11750 -1.9 -2.8 ATPase compare
AO353_27650 -1.9 -3.7 cell division protein FtsK compare
AO353_08015 -1.9 -5.5 5,10-methylenetetrahydrofolate reductase compare
AO353_04105 -1.8 -6.4 argininosuccinate synthase compare
AO353_00310 -1.8 -6.8 transaldolase compare
AO353_08995 -1.8 -9.1 chemotaxis protein CheY compare
AO353_09240 -1.8 -2.5 acetylglutamate kinase compare
AO353_08885 -1.8 -11.5 polyphosphate kinase compare
AO353_12940 -1.8 -5.7 glycosyl transferase compare
AO353_01990 -1.8 -5.6 UDP-N-acetylglucosamine 2-epimerase compare
AO353_14500 -1.8 -4.9 acetolactate synthase 3 regulatory subunit compare
AO353_15170 -1.8 -2.9 cytochrome D ubiquinol oxidase subunit III compare
AO353_03580 -1.8 -2.9 ATP-dependent DNA helicase RuvB compare
AO353_02075 -1.7 -7.6 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_01995 -1.7 -9.7 hypothetical protein compare
AO353_00825 -1.7 -2.8 porin compare
AO353_17640 -1.7 -2.2 serine peptidase compare
AO353_15925 -1.7 -8.1 2-isopropylmalate synthase compare
AO353_16940 -1.7 -4.1 deoxycytidine triphosphate deaminase compare
AO353_04220 -1.6 -4.8 chemotaxis protein CheY compare
AO353_06495 -1.6 -4.4 gamma-glutamyl phosphate reductase compare
AO353_12105 -1.6 -4.4 peptidase S41 compare
AO353_18780 -1.6 -5.0 cobyrinic acid a,c-diamide synthase compare
AO353_09000 -1.6 -4.0 argininosuccinate lyase compare
AO353_08510 -1.6 -4.0 3-phosphoglycerate dehydrogenase compare
AO353_20620 -1.6 -4.8 isopropylmalate isomerase compare
AO353_11165 -1.6 -6.8 hypothetical protein compare
AO353_03060 -1.6 -12.2 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) compare
AO353_02015 -1.6 -5.6 acetyltransferase compare
AO353_22945 -1.6 -8.6 glycogen branching protein compare
AO353_12075 -1.6 -5.6 imidazole glycerol phosphate synthase subunit HisH compare
AO353_20695 -1.6 -4.6 O-succinylhomoserine sulfhydrylase compare
AO353_14495 -1.6 -7.0 acetolactate synthase 3 catalytic subunit compare
AO353_12115 -1.6 -1.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_01190 -1.6 -2.0 hypothetical protein compare
AO353_14775 -1.6 -4.3 hypothetical protein compare
AO353_23495 -1.5 -2.2 SAM-dependent methyltransferase compare
AO353_01265 -1.5 -3.7 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
AO353_14115 -1.5 -4.6 gamma-glutamyl kinase compare
AO353_14595 -1.5 -6.2 carbonate dehydratase compare
AO353_08165 -1.5 -2.4 pyrroline-5-carboxylate reductase compare
AO353_27725 -1.5 -2.7 GNAT family acetyltransferase compare
AO353_02555 -1.5 -8.4 histidine kinase compare
AO353_19280 -1.5 -2.3 hypothetical protein compare
AO353_29000 -1.4 -2.5 pyridoxal-5'-phosphate-dependent protein subunit beta compare
AO353_05195 -1.4 -6.7 glmZ(sRNA)-inactivating NTPase compare
AO353_19055 -1.4 -5.4 universal stress protein UspA compare
AO353_24625 -1.4 -3.0 hypothetical protein compare
AO353_10035 -1.4 -5.8 LysR family transcriptional regulator compare
AO353_17175 -1.3 -2.5 beta-ketoadipyl CoA thiolase compare
AO353_11940 -1.3 -2.3 hypothetical protein compare
AO353_17290 -1.3 -4.2 multidrug transporter compare
AO353_15555 -1.3 -3.6 fumarylacetoacetase compare
AO353_15905 -1.3 -4.0 outer membrane protein assembly factor BamB compare
AO353_07220 -1.3 -4.8 anthranilate synthase compare
AO353_22390 -1.3 -4.7 aldehyde dehydrogenase compare
AO353_03840 -1.3 -2.4 ABC transporter ATP-binding protein compare
AO353_21640 -1.3 -1.7 cobalt transporter compare
AO353_10705 -1.3 -2.8 tryptophan synthase subunit alpha compare
AO353_01985 -1.3 -6.2 hypothetical protein compare
AO353_05800 -1.3 -3.4 hypothetical protein compare
AO353_24440 -1.3 -2.0 reactive intermediate/imine deaminase compare
AO353_18220 -1.3 -7.8 isocitrate dehydrogenase compare
AO353_06050 -1.2 -3.9 exodeoxyribonuclease V subunit gamma compare
AO353_20590 -1.2 -1.8 hydrolase compare
AO353_20170 -1.2 -2.9 trigger factor compare
AO353_06415 -1.2 -3.0 hypothetical protein compare
AO353_11455 -1.2 -1.8 hypothetical protein compare
AO353_02250 -1.2 -2.4 chorismate synthase compare
AO353_22800 -1.2 -1.9 sulfite reductase compare
AO353_22615 -1.2 -3.3 hypothetical protein compare
AO353_28990 -1.2 -4.6 LOG family protein compare
AO353_00260 -1.2 -1.7 hypothetical protein compare
AO353_15900 -1.2 -1.8 GTP-binding protein compare
AO353_14930 -1.2 -2.4 GntR family transcriptional regulator compare
AO353_08245 -1.2 -2.3 cell division ATP-binding protein FtsE compare
AO353_16810 -1.2 -2.8 recombinase RecX compare
AO353_07430 -1.1 -6.8 pyrroloquinoline quinone biosynthesis protein PqqF conserved
AO353_17250 -1.1 -2.2 nitrile hydratase compare
AO353_17005 -1.1 -2.2 hypothetical protein compare
AO353_10455 -1.1 -1.4 tRNA modification GTPase MnmE compare
AO353_23215 -1.1 -2.5 calpastatin compare
AO353_21990 -1.1 -2.6 cytochrome C compare
AO353_18130 -1.1 -1.8 hypothetical protein compare
AO353_28725 -1.1 -1.9 hypothetical protein compare
AO353_20505 -1.1 -3.7 cytidyltransferase compare
AO353_03275 -1.1 -1.8 LysR family transcriptional regulator compare
AO353_19435 -1.1 -2.3 TetR family transcriptional regulator compare
AO353_13155 -1.1 -2.6 hypothetical protein compare
AO353_19610 -1.1 -2.1 hypothetical protein compare
AO353_13070 -1.0 -4.4 phosphoserine phosphatase compare
AO353_24120 -1.0 -1.5 hypothetical protein compare
AO353_26680 -1.0 -2.7 hypothetical protein compare
AO353_18890 -1.0 -3.3 cytochrome C compare
AO353_09660 -1.0 -1.4 hypothetical protein compare
AO353_26080 -1.0 -1.8 hypothetical protein compare
AO353_01550 -1.0 -3.3 hypothetical protein compare
AO353_16805 -1.0 -3.2 recombinase RecA compare
AO353_17425 -1.0 -3.6 lactaldehyde reductase compare
AO353_25335 -1.0 -1.5 malonate decarboxylase acyl carrier protein compare
AO353_19530 -1.0 -1.3 quinohemoprotein amine dehydrogenase compare
AO353_00810 -1.0 -2.0 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_10435 -1.0 -4.8 chromosome partitioning protein compare
AO353_08350 -1.0 -4.2 hypothetical protein compare
AO353_09060 -1.0 -1.5 hypothetical protein compare
AO353_22685 -1.0 -2.3 peroxidase compare
AO353_23400 -1.0 -1.5 hypothetical protein compare
AO353_21410 -1.0 -1.8 hypothetical protein compare
AO353_04665 -1.0 -5.4 ATPase compare
AO353_06850 -0.9 -2.7 MFS transporter compare
AO353_22150 -0.9 -1.8 iron transporter compare
AO353_19360 -0.9 -1.6 peroxiredoxin compare
AO353_09045 -0.9 -1.6 hypothetical protein compare
AO353_05010 -0.9 -1.3 HopJ type III effector protein compare
AO353_28195 -0.9 -2.9 panthothenate synthetase compare
AO353_26090 -0.9 -1.6 hypothetical protein compare
AO353_19085 -0.9 -1.7 organic hydroperoxide resistance protein compare
AO353_07875 -0.9 -1.4 hypothetical protein compare
AO353_03410 -0.9 -1.1 chemotaxis protein CheY compare
AO353_07895 -0.9 -1.9 fructose-bisphosphate aldolase compare
AO353_02220 -0.9 -1.0 hypothetical protein compare
AO353_16980 -0.9 -1.7 isochorismatase compare
AO353_13690 -0.9 -6.2 thiol:disulfide interchange protein compare
AO353_18040 -0.9 -2.3 fimbrial chaperone protein compare
AO353_16195 -0.9 -1.1 DNA mismatch repair protein MutT compare
AO353_18790 -0.9 -1.8 histidine kinase compare
AO353_21935 -0.9 -1.4 nitrite reductase compare
AO353_08265 -0.9 -2.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_05625 -0.8 -1.1 transcription elongation factor GreA compare
AO353_29065 -0.8 -2.9 reactive intermediate/imine deaminase compare
AO353_11530 -0.8 -4.1 diguanylate cyclase compare
AO353_23005 -0.8 -2.0 hypothetical protein compare
AO353_03715 -0.8 -1.3 H-NS histone compare
AO353_04065 -0.8 -2.0 electron transporter RnfB compare
AO353_08115 -0.8 -2.6 energy transducer TonB compare
AO353_22600 -0.8 -1.0 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Ethanol in Pseudomonas fluorescens FW300-N2E3

For carbon source Ethanol across organisms