Experiment set2IT015 for Dyella japonica UNC79MFTsu3.2

Compare to:

L-Proline carbon source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS12070 -8.0 -5.5 anthranilate phosphoribosyltransferase compare
ABZR86_RS08010 -7.0 -4.8 phosphoribosylanthranilate isomerase compare
ABZR86_RS02230 -6.9 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS09635 -6.8 -6.6 phosphoglycerate dehydrogenase compare
ABZR86_RS10475 -6.6 -6.4 shikimate kinase compare
ABZR86_RS20980 -6.2 -4.3 hypothetical protein compare
ABZR86_RS08340 -6.1 -4.2 adenylosuccinate synthase compare
ABZR86_RS11570 -6.1 -10.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS08710 -6.1 -9.2 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS15945 -6.0 -5.2 dihydroxy-acid dehydratase compare
ABZR86_RS08000 -6.0 -7.1 tryptophan synthase subunit beta compare
ABZR86_RS02220 -6.0 -13.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS14985 -5.9 -9.8 shikimate dehydrogenase compare
ABZR86_RS07995 -5.8 -6.9 tryptophan synthase subunit alpha compare
ABZR86_RS10215 -5.8 -7.9 inositol monophosphatase family protein compare
ABZR86_RS15935 -5.7 -14.3 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS15305 -5.7 -5.6 MbcA/ParS/Xre antitoxin family protein compare
ABZR86_RS13515 -5.7 -3.9 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS08700 -5.6 -5.4 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS08705 -5.4 -11.4 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS08695 -5.4 -10.3 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS08715 -5.3 -15.3 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS10715 -5.3 -14.8 serine hydroxymethyltransferase compare
ABZR86_RS08250 -5.3 -3.6 phosphate signaling complex protein PhoU compare
ABZR86_RS08730 -5.2 -12.1 N-acetylornithine carbamoyltransferase compare
ABZR86_RS14100 -5.2 -6.2 DNA adenine methylase compare
ABZR86_RS06720 -5.2 -5.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS07560 -5.0 -4.9 NAD-glutamate dehydrogenase domain-containing protein compare
ABZR86_RS06630 -4.9 -4.7 phosphopyruvate hydratase compare
ABZR86_RS06725 -4.8 -8.6 histidinol-phosphate transaminase compare
ABZR86_RS02285 -4.8 -6.7 DUF1643 domain-containing protein compare
ABZR86_RS06735 -4.7 -6.4 ATP phosphoribosyltransferase compare
ABZR86_RS02815 -4.7 -17.4 asparagine synthase B compare
ABZR86_RS02225 -4.7 -7.8 prephenate dehydratase compare
ABZR86_RS18675 -4.6 -5.4 phosphoglycerate kinase compare
ABZR86_RS12065 -4.6 -8.2 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS12180 -4.5 -18.0 anthranilate synthase component I compare
ABZR86_RS15940 -4.5 -11.6 ketol-acid reductoisomerase compare
ABZR86_RS08040 -4.4 -8.3 chorismate synthase compare
ABZR86_RS15975 -4.4 -14.4 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS06700 -4.4 -8.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS12940 -4.3 -18.8 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA compare
ABZR86_RS06710 -4.3 -6.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS06705 -4.1 -6.7 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS15970 -4.1 -7.4 2-isopropylmalate synthase compare
ABZR86_RS21020 -4.0 -12.2 ATP-binding protein compare
ABZR86_RS05875 -4.0 -6.8 cysteine synthase A compare
ABZR86_RS06000 -4.0 -8.0 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS06730 -3.9 -9.7 histidinol dehydrogenase compare
ABZR86_RS09075 -3.9 -1.8 NrsF family protein compare
ABZR86_RS09840 -3.9 -1.8 Trm112 family protein compare
ABZR86_RS19860 -3.9 -10.7 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS15960 -3.8 -12.4 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS15965 -3.8 -9.0 branched-chain amino acid transaminase compare
ABZR86_RS15460 -3.8 -2.6 type I glutamate--ammonia ligase compare
ABZR86_RS18640 -3.8 -8.7 class I fructose-bisphosphate aldolase compare
ABZR86_RS17085 -3.8 -6.1 type II 3-dehydroquinate dehydratase compare
ABZR86_RS19030 -3.8 -8.3 cystathionine gamma-synthase compare
ABZR86_RS15980 -3.7 -5.1 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS18615 -3.6 -2.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS13850 -3.6 -6.8 phosphoribosylamine--glycine ligase compare
ABZR86_RS10480 -3.4 -3.3 3-dehydroquinate synthase compare
ABZR86_RS15315 -3.4 -9.4 phenylalanine 4-monooxygenase compare
ABZR86_RS15950 -3.4 -9.6 3-isopropylmalate dehydrogenase compare
ABZR86_RS18655 -3.4 -7.8 transketolase compare
ABZR86_RS09885 -3.4 -2.3 trypsin-like peptidase domain-containing protein compare
ABZR86_RS06775 -3.3 -16.8 amidophosphoribosyltransferase compare
ABZR86_RS11485 -3.2 -6.0 hypothetical protein compare
ABZR86_RS08905 -3.1 -9.3 carbonate dehydratase compare
ABZR86_RS20775 -3.1 -5.8 TetR/AcrR family transcriptional regulator compare
ABZR86_RS19235 -3.1 -3.6 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS19025 -3.1 -5.4 homoserine O-succinyltransferase compare
ABZR86_RS06260 -3.1 -5.5 MBL fold metallo-hydrolase compare
ABZR86_RS05995 -3.0 -15.2 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS12215 -3.0 -4.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS12885 -2.9 -2.0 magnesium-translocating P-type ATPase compare
ABZR86_RS19865 -2.9 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS09535 -2.9 -1.9 preprotein translocase subunit YajC compare
ABZR86_RS07590 -2.8 -15.7 methionine synthase compare
ABZR86_RS19560 -2.8 -2.9 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS12005 -2.7 -1.8 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS07585 -2.7 -9.9 homocysteine S-methyltransferase family protein compare
ABZR86_RS05905 -2.6 -8.3 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS20835 -2.6 -6.2 TetR family transcriptional regulator C-terminal domain-containing protein compare
ABZR86_RS02450 -2.6 -3.0 hypothetical protein compare
ABZR86_RS06030 -2.6 -1.7 transcription termination factor NusA compare
ABZR86_RS15955 -2.6 -3.8 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS05885 -2.5 -9.5 LysR substrate-binding domain-containing protein compare
ABZR86_RS15640 -2.4 -1.6 orotate phosphoribosyltransferase compare
ABZR86_RS06590 -2.4 -2.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS09145 -2.4 -4.1 hypothetical protein compare
ABZR86_RS05820 -2.4 -4.9 GntR family transcriptional regulator compare
ABZR86_RS09935 -2.4 -2.5 DUF4105 domain-containing protein compare
ABZR86_RS05550 -2.4 -3.8 lipopolysaccharide assembly protein LapB compare
ABZR86_RS06715 -2.3 -5.6 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS11885 -2.3 -4.6 ATP-binding cassette domain-containing protein compare
ABZR86_RS05900 -2.2 -9.6 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS12780 -2.2 -5.7 pteridine reductase compare
ABZR86_RS11860 -2.2 -12.5 VacJ family lipoprotein compare
ABZR86_RS05895 -2.1 -10.3 phosphoadenylyl-sulfate reductase compare
ABZR86_RS05890 -2.1 -10.5 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS11875 -2.1 -9.7 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR86_RS11880 -2.0 -5.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR86_RS05880 -2.0 -7.5 siroheme synthase CysG compare
ABZR86_RS19800 -2.0 -7.8 RNase adapter RapZ compare
ABZR86_RS12605 -1.9 -3.5 thioredoxin TrxA compare
ABZR86_RS02890 -1.9 -5.9 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS01885 -1.9 -1.4 DUF5668 domain-containing protein compare
ABZR86_RS07180 -1.9 -5.5 RNA polymerase sigma factor RpoE compare
ABZR86_RS18705 -1.8 -1.7 pyridoxal-phosphate dependent enzyme compare
ABZR86_RS10830 -1.8 -2.7 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS09015 -1.8 -5.6 anti-sigma factor compare
ABZR86_RS07250 -1.8 -13.3 phosphoenolpyruvate synthase compare
ABZR86_RS18450 -1.8 -2.3 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS06740 -1.8 -1.7 YerC/YecD family TrpR-related protein compare
ABZR86_RS01730 -1.8 -1.7 DUF3820 family protein compare
ABZR86_RS09630 -1.7 -5.2 FAD-binding oxidoreductase compare
ABZR86_RS11870 -1.7 -8.2 phospholipid-binding protein MlaC compare
ABZR86_RS21480 -1.7 -6.6 arginase family protein compare
ABZR86_RS18355 -1.7 -1.7 PepSY domain-containing protein compare
ABZR86_RS16160 -1.7 -3.3 hypothetical protein compare
ABZR86_RS18960 -1.7 -6.5 TetR/AcrR family transcriptional regulator compare
ABZR86_RS14610 -1.6 -1.8 conjugal transfer protein TrbN compare
ABZR86_RS10205 -1.6 -3.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS08305 -1.6 -10.9 aminomethyl-transferring glycine dehydrogenase compare
ABZR86_RS02880 -1.5 -8.8 sulfate ABC transporter substrate-binding protein compare
ABZR86_RS19725 -1.5 -10.7 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR86_RS18815 -1.5 -4.5 FAD-binding protein compare
ABZR86_RS05445 -1.5 -2.8 helix-turn-helix domain-containing protein compare
ABZR86_RS11985 -1.4 -3.3 cell division protein ZapA compare
ABZR86_RS11995 -1.4 -6.1 5-formyltetrahydrofolate cyclo-ligase compare
ABZR86_RS15985 -1.4 -6.6 homoserine dehydrogenase compare
ABZR86_RS00460 -1.4 -10.8 nicotinate phosphoribosyltransferase compare
ABZR86_RS00685 -1.4 -1.6 carbon storage regulator CsrA compare
ABZR86_RS00570 -1.4 -3.5 acetoacetyl-CoA reductase compare
ABZR86_RS10710 -1.4 -1.3 transcriptional regulator NrdR compare
ABZR86_RS18875 -1.3 -4.0 glycine cleavage system aminomethyltransferase GcvT compare
ABZR86_RS18830 -1.3 -5.6 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS02885 -1.3 -6.4 sulfate ABC transporter permease subunit CysT compare
ABZR86_RS07810 -1.3 -5.4 ATP-binding protein compare
ABZR86_RS07725 -1.3 -2.3 barstar family protein compare
ABZR86_RS10425 -1.3 -3.5 pyrroline-5-carboxylate reductase compare
ABZR86_RS09845 -1.3 -8.5 DUF1631 domain-containing protein compare
ABZR86_RS11655 -1.3 -4.4 SLC13 family permease compare
ABZR86_RS02545 -1.3 -2.3 Ref family recombination enhancement nuclease compare
ABZR86_RS09660 -1.2 -2.6 MerR family transcriptional regulator compare
ABZR86_RS08135 -1.2 -1.3 hypothetical protein compare
ABZR86_RS16610 -1.2 -4.1 hypothetical protein compare
ABZR86_RS02305 -1.2 -0.8 hypothetical protein compare
ABZR86_RS15020 -1.2 -1.3 DUF484 family protein compare
ABZR86_RS19795 -1.2 -5.0 PTS sugar transporter subunit IIA compare
ABZR86_RS00660 -1.2 -3.8 recombinase RecA compare
ABZR86_RS18215 -1.1 -1.4 translesion error-prone DNA polymerase V autoproteolytic subunit compare
ABZR86_RS18880 -1.1 -5.0 glycine cleavage system protein GcvH compare
ABZR86_RS17180 -1.1 -6.8 glycosyltransferase compare
ABZR86_RS07665 -1.1 -2.9 exodeoxyribonuclease V subunit beta compare
ABZR86_RS17075 -1.1 -1.6 four helix bundle protein compare
ABZR86_RS06940 -1.1 -6.0 hypothetical protein compare
ABZR86_RS07660 -1.1 -2.9 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS10530 -1.1 -1.2 H-NS histone family protein compare
ABZR86_RS14870 -1.1 -0.9 AAA family ATPase compare
ABZR86_RS05635 -1.1 -5.2 sodium:calcium antiporter compare
ABZR86_RS21575 -1.1 -4.6 [protein-PII] uridylyltransferase compare
ABZR86_RS21130 -1.0 -3.2 PadR family transcriptional regulator compare
ABZR86_RS07175 -1.0 -3.4 sigma-E factor negative regulatory protein compare
ABZR86_RS08945 -1.0 -6.6 C40 family peptidase compare
ABZR86_RS06665 -1.0 -8.3 L-proline transporter (from data) compare
ABZR86_RS13380 -1.0 -1.1 Sec-independent protein translocase subunit TatA compare
ABZR86_RS09875 -1.0 -6.4 cytochrome bc complex cytochrome b subunit compare
ABZR86_RS19225 -1.0 -2.9 site-specific tyrosine recombinase XerD compare
ABZR86_RS12410 -1.0 -1.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS12905 -1.0 -2.7 hypothetical protein compare
ABZR86_RS01755 -1.0 -3.8 helix-turn-helix domain-containing protein compare
ABZR86_RS05860 -1.0 -1.3 adenylosuccinate lyase compare
ABZR86_RS18150 -1.0 -5.8 universal stress protein compare
ABZR86_RS21300 -1.0 -5.8 SCO family protein compare
ABZR86_RS09490 -1.0 -1.4 P-II family nitrogen regulator compare
ABZR86_RS02200 -0.9 -7.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR86_RS21725 -0.9 -7.0 YhdP family protein compare
ABZR86_RS11970 -0.9 -6.2 aminopeptidase P N-terminal domain-containing protein compare
ABZR86_RS07885 -0.9 -4.0 cation diffusion facilitator family transporter compare
ABZR86_RS07965 -0.9 -2.3 MarR family transcriptional regulator compare
ABZR86_RS12435 -0.9 -5.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS13240 -0.9 -2.4 class I SAM-dependent methyltransferase compare
ABZR86_RS16045 -0.9 -3.3 N-acetylglucosamine-6-phosphate deacetylase compare
ABZR86_RS12415 -0.9 -2.7 NADP-dependent malic enzyme compare
ABZR86_RS02895 -0.9 -3.8 ABC transporter ATP-binding protein compare
ABZR86_RS13780 -0.8 -3.9 hypothetical protein compare
ABZR86_RS13680 -0.8 -1.4 type III secretion HpaP family protein compare
ABZR86_RS21515 -0.8 -4.9 phosphodiester glycosidase family protein compare
ABZR86_RS13355 -0.8 -5.8 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS12900 -0.8 -4.7 heme A synthase compare
ABZR86_RS06580 -0.8 -1.7 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS18775 -0.8 -1.5 nucleotidyltransferase family protein compare
ABZR86_RS21285 -0.8 -1.5 hypothetical protein compare
ABZR86_RS19910 -0.8 -2.0 inorganic phosphate transporter compare
ABZR86_RS19280 -0.8 -1.9 peptide deformylase compare
ABZR86_RS05450 -0.8 -3.7 type IV pilus biogenesis/stability protein PilW compare
ABZR86_RS09880 -0.8 -3.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR86_RS21355 -0.8 -2.9 septum site-determining protein MinD compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source L-Proline in Dyella japonica UNC79MFTsu3.2

For carbon source L-Proline across organisms