Experiment set2IT014 for Pseudomonas fluorescens FW300-N2E3

Compare to:

m-Inositol carbon source

200 most important genes:

  gene name fitness t score description  
AO353_21340 -4.0 -6.1 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) conserved
AO353_20695 -3.9 -5.4 O-succinylhomoserine sulfhydrylase compare
AO353_12090 -3.8 -2.6 imidazole glycerol phosphate synthase subunit HisF compare
AO353_10670 -3.8 -6.8 shikimate dehydrogenase compare
AO353_13070 -3.7 -7.2 phosphoserine phosphatase compare
AO353_10035 -3.7 -8.6 LysR family transcriptional regulator compare
AO353_21345 -3.7 -5.6 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) conserved
AO353_05115 -3.7 -8.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_21335 -3.6 -9.6 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) conserved
AO353_14505 -3.6 -9.6 ketol-acid reductoisomerase compare
AO353_07210 -3.6 -4.9 indole-3-glycerol-phosphate synthase compare
AO353_12520 -3.6 -9.5 glutamate synthase compare
AO353_21385 -3.6 -8.3 m-Inositol ABC transporter, ATPase component (itaA) (from data) conserved
AO353_07230 -3.5 -13.2 anthranilate synthase compare
AO353_12070 -3.5 -7.5 imidazoleglycerol-phosphate dehydratase compare
AO353_02270 -3.5 -5.3 isochorismatase compare
AO353_12515 -3.5 -18.0 glutamate synthase compare
AO353_12085 -3.5 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_08780 -3.5 -7.7 5-formyltetrahydrofolate cyclo-ligase compare
AO353_08185 -3.4 -8.6 methionine biosynthesis protein MetW compare
AO353_07220 -3.4 -7.0 anthranilate synthase compare
AO353_08465 -3.4 -17.5 phosphoenolpyruvate-protein phosphotransferase compare
AO353_21380 -3.4 -5.6 rhizopine-binding protein conserved
AO353_20665 -3.4 -8.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_22800 -3.3 -2.2 sulfite reductase compare
AO353_21350 -3.3 -3.8 methylmalonate-semialdehyde dehydrogenase compare
AO353_20540 -3.2 -7.2 aromatic amino acid aminotransferase compare
AO353_12365 -3.2 -4.4 phosphoribosyl-AMP cyclohydrolase compare
AO353_20635 -3.2 -9.8 3-isopropylmalate dehydrogenase compare
AO353_20620 -3.2 -6.1 isopropylmalate isomerase compare
AO353_10025 -3.2 -13.8 pyruvate carboxylase subunit B compare
AO353_13165 -3.2 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
AO353_10030 -3.2 -9.6 pyruvate carboxylase subunit A compare
AO353_02685 -3.2 -3.7 phosphoribosylglycinamide formyltransferase compare
AO353_02075 -3.1 -8.8 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_02070 -3.1 -5.9 prephenate dehydratase compare
AO353_07155 -3.1 -5.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_12075 -3.1 -7.6 imidazole glycerol phosphate synthase subunit HisH compare
AO353_08685 -3.0 -8.3 N-acetylglutamate synthase compare
AO353_21390 -3.0 -9.0 m-Inositol ABC transporter, permease component (iatP) (from data) conserved
AO353_05110 -3.0 -9.5 histidinol dehydrogenase compare
AO353_21360 -3.0 -8.3 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) conserved
AO353_00310 -3.0 -7.6 transaldolase compare
AO353_21365 -3.0 -6.0 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) conserved
AO353_08165 -3.0 -2.0 pyrroline-5-carboxylate reductase compare
AO353_14400 -3.0 -3.5 Fis family transcriptional regulator compare
AO353_08475 -3.0 -8.6 phosphoserine phosphatase compare
AO353_20175 -3.0 -2.0 ATP-dependent Clp protease proteolytic subunit compare
AO353_08510 -2.9 -4.5 3-phosphoglycerate dehydrogenase compare
AO353_08345 -2.9 -8.3 dihydroxy-acid dehydratase compare
AO353_11850 -2.9 -4.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_08180 -2.9 -12.0 homoserine O-acetyltransferase compare
AO353_10710 -2.9 -5.1 tryptophan synthase subunit beta compare
AO353_09000 -2.8 -4.3 argininosuccinate lyase compare
AO353_07215 -2.8 -6.9 anthranilate phosphoribosyltransferase compare
AO353_08885 -2.8 -15.9 polyphosphate kinase compare
AO353_15925 -2.8 -12.1 2-isopropylmalate synthase compare
AO353_20625 -2.8 -4.5 3-isopropylmalate dehydratase compare
AO353_14495 -2.7 -8.7 acetolactate synthase 3 catalytic subunit compare
AO353_10705 -2.7 -3.7 tryptophan synthase subunit alpha compare
AO353_14115 -2.7 -5.4 gamma-glutamyl kinase compare
AO353_24340 -2.6 -2.2 TetR family transcriptional regulator compare
AO353_09240 -2.6 -3.1 acetylglutamate kinase compare
AO353_06495 -2.6 -5.2 gamma-glutamyl phosphate reductase compare
AO353_02710 -2.6 -8.4 (p)ppGpp synthetase compare
AO353_12360 -2.5 -8.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_14370 -2.5 -6.3 glucose-6-phosphate isomerase compare
AO353_04155 -2.5 -10.6 ornithine carbamoyltransferase compare
AO353_12500 -2.5 -1.7 shikimate kinase compare
AO353_24130 -2.5 -3.3 hypothetical protein compare
AO353_04105 -2.5 -7.4 argininosuccinate synthase compare
AO353_12115 -2.5 -2.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_03020 -2.4 -6.7 arginine N-succinyltransferase compare
AO353_14500 -2.3 -6.2 acetolactate synthase 3 regulatory subunit compare
AO353_08015 -2.3 -6.8 5,10-methylenetetrahydrofolate reductase compare
AO353_01375 -2.2 -5.7 phosphate acyltransferase compare
AO353_05690 -2.2 -2.1 SsrA-binding protein compare
AO353_07325 -2.1 -2.5 diadenosine tetraphosphatase compare
AO353_11750 -2.1 -3.2 ATPase compare
AO353_05080 -2.1 -9.7 sulfate adenylyltransferase compare
AO353_12105 -2.0 -5.8 peptidase S41 compare
AO353_28425 -1.9 -3.6 TetR family transcriptional regulator compare
AO353_18715 -1.9 -2.2 histidine kinase compare
AO353_14595 -1.9 -8.1 carbonate dehydratase compare
AO353_17785 -1.9 -3.3 hypothetical protein compare
AO353_07355 -1.9 -5.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_08265 -1.9 -4.8 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_14795 -1.9 -4.5 molybdopterin-synthase adenylyltransferase compare
AO353_14220 -1.9 -1.8 ribosomal large subunit pseudouridine synthase D compare
AO353_03840 -1.9 -3.2 ABC transporter ATP-binding protein compare
AO353_16835 -1.8 -2.8 LuxR family transcriptional regulator compare
AO353_20565 -1.8 -2.1 tRNA-Ala compare
AO353_19060 -1.8 -4.4 CysB family transcriptional regulator compare
AO353_01975 -1.8 -6.6 glycosyl transferase compare
AO353_14775 -1.8 -5.3 hypothetical protein compare
AO353_28990 -1.8 -6.5 LOG family protein compare
AO353_00825 -1.8 -2.7 porin compare
AO353_14405 -1.8 -10.1 ATPase compare
AO353_04355 -1.8 -2.0 homoserine dehydrogenase compare
AO353_27985 -1.8 -2.9 peptidase M14 compare
AO353_03580 -1.8 -3.5 ATP-dependent DNA helicase RuvB compare
AO353_27675 -1.8 -7.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_02970 -1.8 -3.3 carbon storage regulator compare
AO353_13715 -1.8 -3.5 translation initiation factor Sui1 compare
AO353_05075 -1.8 -8.2 adenylylsulfate kinase compare
AO353_09040 -1.8 -2.0 diaminopimelate epimerase compare
AO353_05130 -1.7 -1.8 anti-anti-sigma factor compare
AO353_02250 -1.7 -3.7 chorismate synthase compare
AO353_03235 -1.7 -7.4 glutamate-pyruvate aminotransferase compare
AO353_04665 -1.7 -8.8 ATPase compare
AO353_01550 -1.7 -4.9 hypothetical protein compare
AO353_09060 -1.7 -3.0 hypothetical protein compare
AO353_14930 -1.7 -3.3 GntR family transcriptional regulator compare
AO353_10455 -1.7 -1.9 tRNA modification GTPase MnmE compare
AO353_12460 -1.7 -6.8 malate dehydrogenase compare
AO353_06155 -1.7 -7.4 copper-transporting ATPase compare
AO353_19435 -1.7 -3.2 TetR family transcriptional regulator compare
AO353_01080 -1.7 -7.5 hypothetical protein compare
AO353_01915 -1.6 -1.9 GlcG protein compare
AO353_22930 -1.6 -3.2 hypothetical protein compare
AO353_08470 -1.6 -3.8 RNA pyrophosphohydrolase compare
AO353_20370 -1.6 -3.1 MerR family transcriptional regulator compare
AO353_13100 -1.6 -1.5 GTPase RsgA compare
AO353_20095 -1.5 -5.0 histidine kinase compare
AO353_11165 -1.5 -7.8 hypothetical protein compare
AO353_12345 -1.5 -2.4 twin-arginine protein translocation system subunit TatC compare
AO353_03275 -1.5 -2.3 LysR family transcriptional regulator compare
AO353_06045 -1.5 -5.2 exodeoxyribonuclease V subunit beta compare
AO353_00510 -1.5 -4.8 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_15170 -1.5 -3.0 cytochrome D ubiquinol oxidase subunit III compare
AO353_04220 -1.5 -4.7 chemotaxis protein CheY compare
AO353_08600 -1.5 -3.2 TetR family transcriptional regulator compare
AO353_05195 -1.5 -7.5 glmZ(sRNA)-inactivating NTPase compare
AO353_16940 -1.5 -4.3 deoxycytidine triphosphate deaminase compare
AO353_02000 -1.5 -3.3 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_02975 -1.4 -2.8 aspartate kinase compare
AO353_21640 -1.4 -1.4 cobalt transporter compare
AO353_27130 -1.4 -2.2 hypothetical protein compare
AO353_03590 -1.4 -3.0 crossover junction endodeoxyribonuclease RuvC compare
AO353_11730 -1.4 -6.6 glutamate--cysteine ligase compare
AO353_02020 -1.4 -4.1 hypothetical protein compare
AO353_27725 -1.4 -2.8 GNAT family acetyltransferase compare
AO353_00515 -1.4 -3.1 hypothetical protein compare
AO353_05800 -1.4 -4.0 hypothetical protein compare
AO353_14420 -1.4 -2.8 molecular chaperone DnaK compare
AO353_20660 -1.4 -3.1 pseudouridine synthase compare
AO353_17650 -1.4 -3.7 response regulator SirA compare
AO353_19250 -1.3 -1.9 molybdenum cofactor guanylyltransferase compare
AO353_16530 -1.3 -1.4 ribonuclease HII compare
AO353_20170 -1.3 -3.4 trigger factor compare
AO353_06050 -1.3 -4.7 exodeoxyribonuclease V subunit gamma compare
AO353_05140 -1.2 -5.0 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_27680 -1.2 -4.2 ATP-dependent Clp protease adaptor ClpS compare
AO353_01995 -1.2 -8.1 hypothetical protein compare
AO353_09260 -1.2 -4.6 ribonuclease PH compare
AO353_27665 -1.2 -5.9 arginyl-tRNA-protein transferase compare
AO353_05105 -1.2 -6.6 histidinol-phosphate aminotransferase compare
AO353_14055 -1.2 -8.0 ATP-dependent protease compare
AO353_05150 -1.2 -3.4 ABC transporter ATP-binding protein compare
AO353_00330 -1.2 -5.5 hypothetical protein compare
AO353_23590 -1.2 -2.0 ArsR family transcriptional regulator compare
AO353_05145 -1.2 -4.1 ABC transporter permease compare
AO353_05625 -1.2 -1.2 transcription elongation factor GreA compare
AO353_22880 -1.2 -4.7 polyketide cyclase compare
AO353_04565 -1.2 -4.0 nucleoid-associated protein compare
AO353_21355 -1.2 -2.3 xylose isomerase compare
AO353_02010 -1.2 -4.5 glycosyl transferase family 1 compare
AO353_06850 -1.2 -3.5 MFS transporter compare
AO353_14740 -1.2 -2.2 GTP-binding protein compare
AO353_00355 -1.2 -2.3 transcriptional regulator compare
AO353_07495 -1.1 -8.5 acyl-CoA dehydrogenase compare
AO353_17235 -1.1 -2.7 4-carboxymuconolactone decarboxylase compare
AO353_18705 -1.1 -3.0 anti-anti-sigma factor compare
AO353_07560 -1.1 -7.2 malate synthase G compare
AO353_25385 -1.1 -2.4 molybdenum cofactor biosynthesis protein MoaC compare
AO353_07315 -1.1 -1.9 rRNA methyltransferase compare
AO353_09235 -1.1 -5.0 phosphoglucomutase compare
AO353_02515 -1.1 -4.4 recombination-associated protein RdgC compare
AO353_12650 -1.1 -1.2 hypothetical protein compare
AO353_20800 -1.1 -1.2 hypothetical protein compare
AO353_18540 -1.0 -1.9 pseudouridine synthase compare
AO353_06745 -1.0 -1.9 zinc-binding protein compare
AO353_08505 -1.0 -6.3 FAD-linked oxidase compare
AO353_10985 -1.0 -1.6 hypothetical protein compare
AO353_10445 -1.0 -1.5 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_03715 -1.0 -1.6 H-NS histone compare
AO353_03420 -1.0 -3.2 phosphogluconate dehydratase compare
AO353_04650 -1.0 -1.8 molybdenum cofactor biosynthesis protein MoaE compare
AO353_12140 -1.0 -3.9 hypothetical protein compare
AO353_13140 -1.0 -3.4 tRNA dimethylallyltransferase compare
AO353_27650 -1.0 -2.8 cell division protein FtsK compare
AO353_23945 -1.0 -1.6 hypothetical protein compare
AO353_09265 -1.0 -1.9 hypothetical protein compare
AO353_09065 -1.0 -4.3 hypothetical protein compare
AO353_14935 -1.0 -2.6 aminopeptidase compare
AO353_12395 -1.0 -2.3 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_25640 -1.0 -1.8 AsnC family transcriptional regulator compare
AO353_01990 -1.0 -4.0 UDP-N-acetylglucosamine 2-epimerase compare
AO353_00455 -1.0 -2.0 beta-hexosaminidase compare
AO353_26620 -1.0 -2.5 ArsR family transcriptional regulator compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source m-Inositol in Pseudomonas fluorescens FW300-N2E3

For carbon source m-Inositol across organisms