Experiment set2IT013 for Dyella japonica UNC79MFTsu3.2

Compare to:

Sodium pyruvate carbon source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS20980 -6.3 -4.3 hypothetical protein compare
ABZR86_RS02285 -5.5 -7.5 DUF1643 domain-containing protein compare
ABZR86_RS08700 -5.5 -5.3 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS11570 -5.5 -11.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS08250 -5.3 -3.7 phosphate signaling complex protein PhoU compare
ABZR86_RS09635 -5.3 -7.0 phosphoglycerate dehydrogenase compare
ABZR86_RS08340 -5.2 -7.0 adenylosuccinate synthase compare
ABZR86_RS16795 -5.1 -22.4 glutamate synthase large subunit compare
ABZR86_RS08715 -5.1 -16.2 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS15980 -5.1 -6.0 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS08010 -5.1 -7.7 phosphoribosylanthranilate isomerase compare
ABZR86_RS19025 -5.1 -4.9 homoserine O-succinyltransferase compare
ABZR86_RS08040 -5.0 -6.8 chorismate synthase compare
ABZR86_RS14100 -4.9 -8.2 DNA adenine methylase compare
ABZR86_RS10425 -4.9 -5.7 pyrroline-5-carboxylate reductase compare
ABZR86_RS08710 -4.8 -10.1 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS09935 -4.7 -3.2 DUF4105 domain-containing protein compare
ABZR86_RS06720 -4.7 -6.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS06000 -4.7 -8.3 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS15940 -4.6 -12.6 ketol-acid reductoisomerase compare
ABZR86_RS15305 -4.5 -8.1 MbcA/ParS/Xre antitoxin family protein compare
ABZR86_RS08705 -4.5 -12.0 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS08000 -4.5 -17.0 tryptophan synthase subunit beta compare
ABZR86_RS13515 -4.5 -7.4 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS05875 -4.4 -7.8 cysteine synthase A compare
ABZR86_RS18640 -4.4 -10.1 class I fructose-bisphosphate aldolase compare
ABZR86_RS18675 -4.3 -5.9 phosphoglycerate kinase compare
ABZR86_RS14985 -4.3 -12.6 shikimate dehydrogenase compare
ABZR86_RS15960 -4.3 -12.7 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS19030 -4.3 -6.7 cystathionine gamma-synthase compare
ABZR86_RS15935 -4.3 -16.5 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS16800 -4.3 -13.9 FAD-dependent oxidoreductase compare
ABZR86_RS06705 -4.2 -6.0 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS08730 -4.2 -12.2 N-acetylornithine carbamoyltransferase compare
ABZR86_RS08695 -4.2 -12.8 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS06730 -4.1 -10.6 histidinol dehydrogenase compare
ABZR86_RS11555 -4.1 -15.1 phosphoenolpyruvate carboxylase compare
ABZR86_RS15975 -4.1 -12.4 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS15945 -4.0 -5.4 dihydroxy-acid dehydratase compare
ABZR86_RS10715 -4.0 -16.0 serine hydroxymethyltransferase compare
ABZR86_RS10480 -4.0 -4.7 3-dehydroquinate synthase compare
ABZR86_RS07995 -4.0 -9.1 tryptophan synthase subunit alpha compare
ABZR86_RS02890 -3.9 -8.6 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS09075 -3.9 -1.8 NrsF family protein compare
ABZR86_RS10475 -3.9 -6.6 shikimate kinase compare
ABZR86_RS06725 -3.9 -9.2 histidinol-phosphate transaminase compare
ABZR86_RS15460 -3.9 -2.7 type I glutamate--ammonia ligase compare
ABZR86_RS19560 -3.8 -6.4 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS02815 -3.8 -17.8 asparagine synthase B compare
ABZR86_RS21575 -3.8 -11.2 [protein-PII] uridylyltransferase compare
ABZR86_RS15950 -3.8 -9.3 3-isopropylmalate dehydrogenase compare
ABZR86_RS06700 -3.7 -8.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS05995 -3.7 -16.7 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS15970 -3.7 -7.2 2-isopropylmalate synthase compare
ABZR86_RS06630 -3.7 -2.9 phosphopyruvate hydratase compare
ABZR86_RS15965 -3.6 -9.6 branched-chain amino acid transaminase compare
ABZR86_RS12180 -3.6 -17.1 anthranilate synthase component I compare
ABZR86_RS06710 -3.6 -9.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS12065 -3.6 -5.9 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS06590 -3.6 -3.3 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS05885 -3.5 -11.3 LysR substrate-binding domain-containing protein compare
ABZR86_RS09885 -3.5 -2.3 trypsin-like peptidase domain-containing protein compare
ABZR86_RS12070 -3.4 -7.0 anthranilate phosphoribosyltransferase compare
ABZR86_RS15955 -3.4 -5.6 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS06715 -3.4 -7.2 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS10215 -3.4 -9.7 inositol monophosphatase family protein compare
ABZR86_RS05895 -3.3 -14.0 phosphoadenylyl-sulfate reductase compare
ABZR86_RS06260 -3.3 -4.3 MBL fold metallo-hydrolase compare
ABZR86_RS17085 -3.3 -6.6 type II 3-dehydroquinate dehydratase compare
ABZR86_RS08905 -3.3 -10.3 carbonate dehydratase compare
ABZR86_RS15330 -3.3 -11.2 TetR/AcrR family transcriptional regulator compare
ABZR86_RS19860 -3.3 -11.2 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS12200 -3.3 -8.0 ribulose-phosphate 3-epimerase compare
ABZR86_RS07250 -3.2 -16.6 phosphoenolpyruvate synthase compare
ABZR86_RS05550 -3.2 -3.8 lipopolysaccharide assembly protein LapB compare
ABZR86_RS02230 -3.2 -4.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS02450 -3.2 -4.5 hypothetical protein compare
ABZR86_RS15315 -3.2 -9.5 phenylalanine 4-monooxygenase compare
ABZR86_RS19865 -3.2 -3.0 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS19235 -3.1 -3.6 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS02220 -3.1 -17.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS21020 -3.0 -11.5 ATP-binding protein compare
ABZR86_RS18655 -3.0 -8.6 transketolase compare
ABZR86_RS12780 -3.0 -6.7 pteridine reductase compare
ABZR86_RS06775 -3.0 -15.6 amidophosphoribosyltransferase compare
ABZR86_RS02880 -3.0 -14.4 sulfate ABC transporter substrate-binding protein compare
ABZR86_RS02885 -3.0 -11.8 sulfate ABC transporter permease subunit CysT compare
ABZR86_RS21480 -3.0 -8.1 arginase family protein compare
ABZR86_RS10710 -3.0 -2.7 transcriptional regulator NrdR compare
ABZR86_RS02225 -3.0 -6.3 prephenate dehydratase compare
ABZR86_RS12885 -2.9 -2.0 magnesium-translocating P-type ATPase compare
ABZR86_RS15020 -2.9 -2.0 DUF484 family protein compare
ABZR86_RS05900 -2.9 -11.5 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS05890 -2.9 -14.6 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS13850 -2.8 -5.9 phosphoribosylamine--glycine ligase compare
ABZR86_RS20775 -2.8 -5.6 TetR/AcrR family transcriptional regulator compare
ABZR86_RS12215 -2.8 -4.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS15985 -2.7 -7.7 homoserine dehydrogenase compare
ABZR86_RS07585 -2.7 -13.0 homocysteine S-methyltransferase family protein compare
ABZR86_RS08945 -2.6 -11.8 C40 family peptidase compare
ABZR86_RS18355 -2.6 -2.1 PepSY domain-containing protein compare
ABZR86_RS11825 -2.6 -2.5 citrate synthase compare
ABZR86_RS10530 -2.6 -2.0 H-NS histone family protein compare
ABZR86_RS07180 -2.5 -5.0 RNA polymerase sigma factor RpoE compare
ABZR86_RS07590 -2.5 -14.1 methionine synthase compare
ABZR86_RS05905 -2.5 -6.3 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS15640 -2.5 -1.7 orotate phosphoribosyltransferase compare
ABZR86_RS17180 -2.5 -12.0 glycosyltransferase compare
ABZR86_RS00685 -2.4 -2.2 carbon storage regulator CsrA compare
ABZR86_RS08685 -2.4 -6.3 glutamate 5-kinase compare
ABZR86_RS11860 -2.4 -12.0 VacJ family lipoprotein compare
ABZR86_RS06735 -2.4 -5.3 ATP phosphoribosyltransferase compare
ABZR86_RS12505 -2.4 -8.6 SDR family oxidoreductase compare
ABZR86_RS16160 -2.4 -3.9 hypothetical protein compare
ABZR86_RS08305 -2.4 -16.3 aminomethyl-transferring glycine dehydrogenase compare
ABZR86_RS11880 -2.4 -5.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR86_RS15195 -2.4 -9.7 response regulator transcription factor conserved
ABZR86_RS11870 -2.3 -12.1 phospholipid-binding protein MlaC compare
ABZR86_RS15190 -2.3 -14.3 PAS domain-containing hybrid sensor histidine kinase/response regulator conserved
ABZR86_RS19265 -2.3 -8.2 YbdD/YjiX family protein conserved
ABZR86_RS00570 -2.2 -4.5 acetoacetyl-CoA reductase compare
ABZR86_RS18450 -2.2 -1.5 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS06740 -2.2 -3.1 YerC/YecD family TrpR-related protein compare
ABZR86_RS02895 -2.2 -6.1 ABC transporter ATP-binding protein compare
ABZR86_RS18875 -2.2 -8.1 glycine cleavage system aminomethyltransferase GcvT compare
ABZR86_RS19270 -2.2 -14.4 carbon starvation CstA family protein conserved
ABZR86_RS12605 -2.2 -3.7 thioredoxin TrxA compare
ABZR86_RS11485 -2.2 -5.8 hypothetical protein compare
ABZR86_RS18615 -2.1 -3.1 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS07965 -2.1 -6.1 MarR family transcriptional regulator compare
ABZR86_RS12410 -2.1 -2.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS18880 -2.1 -7.0 glycine cleavage system protein GcvH compare
ABZR86_RS11995 -2.1 -7.6 5-formyltetrahydrofolate cyclo-ligase compare
ABZR86_RS05820 -2.1 -5.1 GntR family transcriptional regulator compare
ABZR86_RS09840 -2.0 -1.6 Trm112 family protein compare
ABZR86_RS02200 -2.0 -13.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR86_RS21725 -2.0 -11.6 YhdP family protein compare
ABZR86_RS16345 -2.0 -12.7 NADP-dependent isocitrate dehydrogenase compare
ABZR86_RS06355 -2.0 -4.6 folate-binding protein YgfZ compare
ABZR86_RS09430 -1.9 -5.9 non-heme iron oxygenase ferredoxin subunit compare
ABZR86_RS09845 -1.9 -9.8 DUF1631 domain-containing protein compare
ABZR86_RS09145 -1.9 -3.1 hypothetical protein compare
ABZR86_RS18815 -1.9 -4.6 FAD-binding protein compare
ABZR86_RS19795 -1.9 -7.1 PTS sugar transporter subunit IIA compare
ABZR86_RS06580 -1.9 -2.7 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS15925 -1.9 -11.0 threonine ammonia-lyase, biosynthetic compare
ABZR86_RS16285 -1.8 -10.5 cell division protein ZapE compare
ABZR86_RS07810 -1.8 -6.5 ATP-binding protein compare
ABZR86_RS13380 -1.8 -1.6 Sec-independent protein translocase subunit TatA compare
ABZR86_RS17210 -1.8 -12.2 TolC family outer membrane protein compare
ABZR86_RS12005 -1.8 -1.6 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS11875 -1.8 -8.6 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR86_RS09015 -1.8 -5.4 anti-sigma factor compare
ABZR86_RS02185 -1.7 -8.4 tRNA 2-thiouridine(34) synthase MnmA compare
ABZR86_RS13865 -1.7 -1.3 DNA topoisomerase I compare
ABZR86_RS14870 -1.7 -1.3 AAA family ATPase compare
ABZR86_RS09660 -1.7 -3.9 MerR family transcriptional regulator compare
ABZR86_RS08415 -1.6 -3.5 OmpA family protein compare
ABZR86_RS05880 -1.6 -6.6 siroheme synthase CysG compare
ABZR86_RS13880 -1.6 -2.4 peptide deformylase compare
ABZR86_RS21335 -1.6 -1.0 response regulator transcription factor compare
ABZR86_RS06030 -1.6 -1.4 transcription termination factor NusA compare
ABZR86_RS08680 -1.6 -7.8 glutamate-5-semialdehyde dehydrogenase compare
ABZR86_RS17485 -1.6 -9.8 septal ring lytic transglycosylase RlpA family protein compare
ABZR86_RS07665 -1.6 -3.5 exodeoxyribonuclease V subunit beta compare
ABZR86_RS12835 -1.6 -5.7 DedA family protein compare
ABZR86_RS19805 -1.5 -5.0 HPr(Ser) kinase/phosphatase compare
ABZR86_RS10205 -1.5 -5.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS18465 -1.5 -7.5 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR86_RS16045 -1.5 -6.8 N-acetylglucosamine-6-phosphate deacetylase compare
ABZR86_RS11885 -1.5 -3.2 ATP-binding cassette domain-containing protein compare
ABZR86_RS08350 -1.4 -7.1 protease modulator HflC compare
ABZR86_RS16770 -1.4 -1.7 phage holin family protein compare
ABZR86_RS18830 -1.4 -6.0 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS13355 -1.4 -8.6 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS18480 -1.4 -11.6 homogentisate 1,2-dioxygenase compare
ABZR86_RS12435 -1.3 -7.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS05945 -1.3 -4.7 twitching motility response regulator PilH compare
ABZR86_RS18360 -1.3 -8.5 response regulator transcription factor compare
ABZR86_RS02545 -1.3 -2.5 Ref family recombination enhancement nuclease compare
ABZR86_RS00645 -1.3 -5.0 FecR domain-containing protein compare
ABZR86_RS20835 -1.3 -4.6 TetR family transcriptional regulator C-terminal domain-containing protein compare
ABZR86_RS02740 -1.3 -5.6 NfuA family Fe-S biogenesis protein compare
ABZR86_RS14705 -1.3 -5.2 GntR family transcriptional regulator compare
ABZR86_RS08475 -1.3 -6.4 2-methylcitrate synthase compare
ABZR86_RS11845 -1.3 -7.5 RidA family protein compare
ABZR86_RS08355 -1.2 -3.2 FtsH protease activity modulator HflK compare
ABZR86_RS21435 -1.2 -4.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABZR86_RS12595 -1.2 -1.2 cell division ATP-binding protein FtsE compare
ABZR86_RS11970 -1.2 -8.3 aminopeptidase P N-terminal domain-containing protein compare
ABZR86_RS15990 -1.2 -2.3 hypothetical protein compare
ABZR86_RS12280 -1.2 -1.1 dihydrolipoyl dehydrogenase compare
ABZR86_RS12590 -1.2 -8.4 permease-like cell division protein FtsX compare
ABZR86_RS08630 -1.2 -1.2 SDR family NAD(P)-dependent oxidoreductase compare
ABZR86_RS18705 -1.1 -1.7 pyridoxal-phosphate dependent enzyme compare
ABZR86_RS13780 -1.1 -5.3 hypothetical protein compare
ABZR86_RS10840 -1.1 -2.1 Holliday junction branch migration protein RuvA compare
ABZR86_RS02500 -1.1 -1.9 hypothetical protein compare
ABZR86_RS10870 -1.1 -2.1 FmdB family zinc ribbon protein compare
ABZR86_RS12900 -1.1 -6.7 heme A synthase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium pyruvate in Dyella japonica UNC79MFTsu3.2

For carbon source Sodium pyruvate across organisms