Experiment set2IT012 for Ralstonia solanacearum GMI1000

Compare to:

Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

200 most detrimental genes:

  gene name fitness t score description  
RS_RS01420 +5.7 35.7 sensor histidine kinase compare
RS_RS01435 +5.3 35.1 DNA-binding response regulator compare
RS_RS05450 +5.1 19.0 XRE family transcriptional regulator compare
RS_RS06045 +3.7 24.8 RNA polymerase sigma factor RpoS compare
RS_RS12575 +3.6 22.6 type II toxin-antitoxin system HipA family toxin compare
RS_RS01160 +2.4 16.4 hypothetical protein compare
RS_RS25085 +2.1 8.6 hypothetical protein compare
RS_RS13205 +2.1 9.1 molecular chaperone DnaK compare
RS_RS13335 +2.0 1.2 ATP:cob(I)alamin adenosyltransferase compare
RS_RS14895 +1.9 4.2 pilus assembly protein PilP compare
RS_RS11950 +1.9 10.8 OmpA family lipoprotein compare
RS_RS17205 +1.8 12.6 cold-shock protein compare
RS_RS01715 +1.8 9.4 phosphoenolpyruvate--protein phosphotransferase compare
RS_RS22345 +1.8 2.4 type II secretion system F family protein compare
RS_RS26480 +1.7 1.2 hypothetical protein compare
RS_RS21960 +1.6 11.9 hypothetical protein compare
RS_RS18630 +1.6 12.0 PadR family transcriptional regulator compare
RS_RS12330 +1.5 6.9 hybrid sensor histidine kinase/response regulator compare
RS_RS25110 +1.4 10.9 sigma-54-dependent Fis family transcriptional regulator compare
RS_RS25105 +1.3 10.4 sigma-54-dependent Fis family transcriptional regulator compare
RS_RS02795 +1.3 6.7 pilin compare
RS_RS19680 +1.3 7.4 two-component sensor histidine kinase compare
RS_RS00325 +1.3 6.7 LysR family transcriptional regulator compare
RS_RS21865 +1.3 5.9 thiamine phosphate synthase compare
RS_RS06040 +1.3 2.9 LysM peptidoglycan-binding domain-containing protein compare
RS_RS19675 +1.2 6.4 DNA-binding response regulator compare
RS_RS04735 +1.2 3.9 RNA helicase compare
RS_RS24715 +1.2 3.3 helix-turn-helix transcriptional regulator compare
RS_RS25500 +1.1 2.3 hypothetical protein compare
RS_RS00350 +1.1 2.5 peptide deformylase compare
RS_RS25790 +1.1 2.0 hypothetical protein compare
RS_RS18670 +1.1 2.0 nuclear transport factor 2 family protein compare
RS_RS04740 +1.1 2.0 hypothetical protein compare
RS_RS14140 +1.1 2.8 prepilin peptidase compare
RS_RS21310 +1.0 7.7 regulatory protein HrpB compare
RS_RS06990 +1.0 5.9 succinyldiaminopimelate transaminase compare
RS_RS18160 +1.0 2.5 hypothetical protein compare
RS_RS14040 +1.0 5.6 two-component sensor histidine kinase compare
RS_RS05025 +1.0 1.8 ABC transporter permease compare
RS_RS14280 +1.0 5.6 porin compare
RS_RS01735 +1.0 1.7 S41 family peptidase compare
RS_RS21300 +1.0 1.7 type III secretion protein HrpB7 compare
RS_RS25830 +1.0 5.6 hypothetical protein compare
RS_RS12605 +1.0 4.8 hypothetical protein compare
RS_RS14335 +1.0 1.6 ABC transporter ATP-binding protein compare
RS_RS17315 +1.0 1.1 hypothetical protein compare
RS_RS03535 +0.9 2.0 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
RS_RS18950 +0.9 3.0 flagellar biosynthetic protein FliR compare
RS_RS09615 +0.9 1.9 transcriptional regulator compare
RS_RS18235 +0.9 6.9 crotonase compare
RS_RS08165 +0.9 3.3 hypothetical protein compare
RS_RS15495 +0.9 1.6 hypothetical protein compare
RS_RS06115 +0.9 2.7 GTPase HflX compare
RS_RS02350 +0.9 6.0 3-hydroxyacyl-CoA dehydrogenase compare
RS_RS14130 +0.9 1.6 type IV-A pilus assembly ATPase PilB compare
RS_RS10690 +0.9 2.0 hypothetical protein compare
RS_RS04805 +0.8 4.5 hypothetical protein compare
RS_RS00320 +0.8 6.4 AMP-dependent synthetase compare
RS_RS21205 +0.8 6.1 DNA-binding response regulator compare
RS_RS03195 +0.8 1.3 TetR family transcriptional regulator compare
RS_RS02615 +0.8 1.6 hypothetical protein compare
RS_RS05030 +0.8 2.4 sugar ABC transporter ATP-binding protein compare
RS_RS13455 +0.8 2.2 DNA starvation/stationary phase protection protein compare
RS_RS22215 +0.8 3.8 cold-shock protein compare
RS_RS02325 +0.8 4.9 EEP domain-containing protein compare
RS_RS04870 +0.8 2.4 glutathione S-transferase compare
RS_RS10065 +0.8 6.5 aconitate hydratase AcnA compare
RS_RS25455 +0.8 1.5 hypothetical protein compare
RS_RS17690 +0.8 3.8 carbonic anhydrase compare
RS_RS14900 +0.8 3.6 type IV pilus biogenesis protein PilO compare
RS_RS07925 +0.8 3.5 RidA family protein compare
RS_RS10480 +0.7 1.1 DUF924 domain-containing protein compare
RS_RS17695 +0.7 4.5 SulP family inorganic anion transporter compare
RS_RS16385 +0.7 1.9 arsenate reductase (glutaredoxin) compare
RS_RS08255 +0.7 1.8 hypothetical protein compare
RS_RS09015 +0.7 1.7 type 4 fimbrial biogenesis protein compare
RS_RS21965 +0.7 5.1 polysaccharide biosynthesis protein compare
RS_RS05350 +0.7 2.6 GlsB/YeaQ/YmgE family stress response membrane protein compare
RS_RS14365 +0.7 1.3 23S ribosomal RNA compare
RS_RS25795 +0.7 1.1 hypothetical protein compare
RS_RS20790 +0.7 1.5 hypothetical protein compare
RS_RS13295 +0.7 0.8 rhombosortase compare
RS_RS02050 +0.7 3.9 potassium transporter compare
RS_RS05675 +0.7 3.7 PHP domain-containing protein compare
RS_RS18990 +0.7 0.9 DNA-binding response regulator compare
RS_RS03655 +0.7 4.7 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
RS_RS21000 +0.7 1.3 DUF4154 domain-containing protein compare
RS_RS11290 +0.7 1.1 4-carboxymuconolactone decarboxylase compare
RS_RS09145 +0.7 2.0 hypothetical protein compare
RS_RS07080 +0.7 2.6 RIP metalloprotease RseP compare
RS_RS10425 +0.7 1.7 RNA polymerase sigma factor compare
RS_RS08465 +0.7 1.6 HNH endonuclease compare
RS_RS14515 +0.6 1.9 flagellar protein FliT compare
RS_RS10215 +0.6 1.3 urease accessory protein compare
RS_RS01375 +0.6 3.7 MerR family DNA-binding transcriptional regulator compare
RS_RS06155 +0.6 5.1 ribonuclease R compare
RS_RS04665 +0.6 4.7 cobalamin biosynthesis protein CobD compare
RS_RS12570 +0.6 3.8 EamA/RhaT family transporter compare
RS_RS12375 +0.6 2.2 ATP-dependent Clp protease adaptor ClpS compare
RS_RS10440 +0.6 0.9 RDD family protein compare
RS_RS20300 +0.6 3.4 transcriptional regulator compare
RS_RS06280 +0.6 1.8 polysaccharide deacetylase family protein compare
RS_RS07845 +0.6 1.0 NAD(P)H:quinone oxidoreductase compare
RS_RS24705 +0.6 2.4 amino acid ABC transporter permease compare
RS_RS18105 +0.6 4.6 aspartate aminotransferase family protein compare
RS_RS08785 +0.6 2.0 ABC transporter permease compare
RS_RS22565 +0.6 1.4 ArsR family transcriptional regulator compare
RS_RS10495 +0.6 4.3 hypothetical protein compare
RS_RS07645 +0.6 1.6 RNA-binding protein compare
RS_RS14910 +0.6 2.2 pilus assembly protein PilM compare
RS_RS19535 +0.6 1.8 HIT family protein compare
RS_RS07930 +0.6 4.5 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
RS_RS06225 +0.6 0.7 sugar ABC transporter ATP-binding protein compare
RS_RS21200 +0.6 3.8 LuxR family transcriptional regulator compare
RS_RS07860 +0.6 1.4 alpha/beta hydrolase compare
RS_RS10820 +0.6 3.7 serine/threonine protein kinase compare
RS_RS01330 +0.6 2.0 HAD family phosphatase compare
RS_RS24790 +0.6 4.3 hypothetical protein compare
RS_RS09495 +0.6 2.0 LysR family transcriptional regulator compare
RS_RS03640 +0.6 2.1 type IV pilin protein compare
RS_RS26275 +0.6 1.1 hypothetical protein compare
RS_RS06205 +0.6 2.3 myo-inosose-2 dehydratase compare
RS_RS22030 +0.5 2.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
RS_RS17725 +0.5 2.4 2-methylaconitate cis-trans isomerase PrpF compare
RS_RS03240 +0.5 2.1 peptidase M48 compare
RS_RS22025 +0.5 3.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare
RS_RS03635 +0.5 2.5 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
RS_RS14135 +0.5 2.4 type II secretion system F family protein compare
RS_RS13795 +0.5 3.5 arabinose import ATP-binding protein AraG compare
RS_RS17960 +0.5 0.8 hypothetical protein compare
RS_RS04855 +0.5 2.4 L-lactate permease compare
RS_RS03645 +0.5 4.1 pilus biosynthesis protein PilY compare
RS_RS11690 +0.5 1.9 hypothetical protein compare
RS_RS23080 +0.5 1.8 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase compare
RS_RS15795 +0.5 4.2 DUF4123 domain-containing protein compare
RS_RS03530 +0.5 1.0 NADH:flavin oxidoreductase/NADH oxidase compare
RS_RS03895 +0.5 1.1 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
RS_RS21190 +0.5 3.4 RNA polymerase sigma factor compare
RS_RS15560 +0.5 3.8 N-acetyltransferase compare
RS_RS13165 +0.5 4.3 polynucleotide adenylyltransferase PcnB compare
RS_RS06240 +0.5 2.2 protein implicated IN myo-inositol catabolite pathway compare
RS_RS08895 +0.5 2.3 acetyl-CoA C-acyltransferase compare
RS_RS08800 +0.5 2.5 peptidase C45 compare
RS_RS00155 +0.5 2.6 nucleoid occlusion factor SlmA compare
RS_RS13470 +0.5 2.0 hydrogen peroxide-inducible genes activator compare
RS_RS08405 +0.5 1.6 hypothetical protein compare
RS_RS05185 +0.5 1.6 metal-binding protein compare
RS_RS05485 +0.5 1.3 diguanylate cyclase compare
RS_RS22945 +0.5 0.9 hypothetical protein compare
RS_RS08610 +0.5 1.3 lysis protein compare
RS_RS12565 +0.5 2.9 methylated-DNA--[protein]-cysteine S-methyltransferase compare
RS_RS23885 +0.5 1.4 protein phosphatase CheZ compare
RS_RS11975 +0.5 1.0 DUF3460 domain-containing protein compare
RS_RS21545 +0.5 1.3 hypothetical protein compare
RS_RS13225 +0.5 1.1 hypothetical protein compare
RS_RS02120 +0.5 1.0 polysaccharide deacetylase family protein compare
RS_RS08025 +0.5 1.1 exodeoxyribonuclease III compare
RS_RS22940 +0.5 2.3 GGDEF domain-containing protein compare
RS_RS18955 +0.5 1.5 flagellar biosynthetic protein FliQ compare
RS_RS12520 +0.5 1.1 LysR family transcriptional regulator compare
RS_RS11010 +0.5 1.8 ribosome silencing factor compare
RS_RS22040 +0.5 1.4 protein-tyrosine-phosphatase compare
RS_RS13370 +0.5 1.7 LrgB family protein compare
RS_RS06710 +0.5 1.0 aliphatic sulfonate ABC transporter substrate-binding protein compare
RS_RS25445 +0.5 1.3 C-5 sterol desaturase compare
RS_RS18685 +0.5 1.7 Cd(II)/Pb(II)-responsive transcriptional regulator compare
RS_RS03510 +0.5 2.8 TetR/AcrR family transcriptional regulator compare
RS_RS10885 +0.5 1.7 LamB/YcsF family protein compare
RS_RS20195 +0.5 0.9 hypothetical protein compare
RS_RS09920 +0.5 1.0 nodulation factor ABC transporter ATP-binding protein NodI compare
RS_RS00800 +0.5 0.8 TetR/AcrR family transcriptional regulator compare
RS_RS00345 +0.5 3.0 LysM peptidoglycan-binding domain-containing protein compare
RS_RS07840 +0.5 0.7 DUF2069 domain-containing protein compare
RS_RS06355 +0.5 1.4 glycerophosphodiester phosphodiesterase compare
RS_RS06050 +0.5 2.1 EEP domain-containing protein compare
RS_RS03630 +0.5 1.3 hypothetical protein compare
RS_RS09515 +0.5 1.8 ABC transporter ATP-binding protein compare
RS_RS09725 +0.5 1.5 DUF3380 domain-containing protein compare
RS_RS22735 +0.5 2.2 two-component sensor histidine kinase compare
RS_RS11035 +0.5 1.0 alkylhydroperoxidase compare
RS_RS06790 +0.4 0.8 ribonuclease E inhibitor RraA compare
RS_RS26120 +0.4 1.8 hypothetical protein compare
RS_RS04800 +0.4 1.5 chloride channel protein EriC compare
RS_RS18665 +0.4 2.7 nitronate monooxygenase compare
RS_RS05665 +0.4 1.8 KR domain-containing protein compare
RS_RS03320 +0.4 1.7 Flp family type IVb pilin compare
RS_RS24875 +0.4 1.5 transcriptional regulator compare
RS_RS01900 +0.4 1.0 amino acid transporter compare
RS_RS08470 +0.4 1.4 hypothetical protein compare
RS_RS07455 +0.4 1.5 DUF1653 domain-containing protein compare
RS_RS09980 +0.4 2.1 peptidoglycan-binding protein compare
RS_RS24655 +0.4 1.8 bb3-type cytochrome oxidase subunit IV compare
RS_RS18815 +0.4 1.3 flagellar basal-body rod protein FlgF compare
RS_RS22705 +0.4 2.3 hypothetical protein compare
RS_RS25495 +0.4 1.6 hypothetical protein compare
RS_RS14655 +0.4 0.7 ClpXP protease specificity-enhancing factor compare
RS_RS08085 +0.4 1.3 histone deacetylase compare
RS_RS18775 +0.4 3.8 DNA-binding response regulator compare
RS_RS14990 +0.4 0.6 divalent-cation tolerance protein CutA compare
RS_RS15820 +0.4 2.2 XRE family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Ralstonia solanacearum GMI1000 in in planta experiments

For in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted across organisms