Experiment set2IT012 for Dyella japonica UNC79MFTsu3.2

Compare to:

D-Cellobiose carbon source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS09635 -6.9 -6.7 phosphoglycerate dehydrogenase compare
ABZR86_RS12070 -6.7 -7.9 anthranilate phosphoribosyltransferase compare
ABZR86_RS20980 -6.2 -4.3 hypothetical protein compare
ABZR86_RS10425 -6.1 -4.2 pyrroline-5-carboxylate reductase compare
ABZR86_RS08710 -6.1 -8.3 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS14985 -6.1 -10.1 shikimate dehydrogenase compare
ABZR86_RS15945 -5.7 -6.7 dihydroxy-acid dehydratase compare
ABZR86_RS15960 -5.6 -10.8 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS13055 -5.5 -10.5 glucokinase compare
ABZR86_RS14100 -5.4 -5.3 DNA adenine methylase compare
ABZR86_RS06725 -5.4 -7.4 histidinol-phosphate transaminase compare
ABZR86_RS15940 -5.4 -10.9 ketol-acid reductoisomerase compare
ABZR86_RS08700 -5.4 -5.2 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS08715 -5.4 -15.4 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS11570 -5.3 -10.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS15950 -5.3 -7.2 3-isopropylmalate dehydrogenase compare
ABZR86_RS08705 -5.2 -11.2 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS08250 -5.2 -3.6 phosphate signaling complex protein PhoU compare
ABZR86_RS19560 -5.1 -6.2 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS02225 -5.1 -7.0 prephenate dehydratase compare
ABZR86_RS15935 -5.1 -14.9 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS10215 -5.1 -7.5 inositol monophosphatase family protein compare
ABZR86_RS02815 -5.0 -17.6 asparagine synthase B compare
ABZR86_RS08000 -5.0 -14.8 tryptophan synthase subunit beta compare
ABZR86_RS07995 -5.0 -6.8 tryptophan synthase subunit alpha compare
ABZR86_RS08340 -4.9 -6.7 adenylosuccinate synthase compare
ABZR86_RS16795 -4.9 -21.7 glutamate synthase large subunit compare
ABZR86_RS06710 -4.9 -7.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS15980 -4.8 -5.7 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS06720 -4.8 -5.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS12180 -4.8 -17.4 anthranilate synthase component I compare
ABZR86_RS16800 -4.8 -14.5 FAD-dependent oxidoreductase compare
ABZR86_RS08695 -4.8 -11.4 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS10715 -4.7 -16.1 serine hydroxymethyltransferase compare
ABZR86_RS12065 -4.7 -8.9 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS15965 -4.7 -10.9 branched-chain amino acid transaminase compare
ABZR86_RS08040 -4.6 -7.7 chorismate synthase compare
ABZR86_RS15970 -4.6 -9.9 2-isopropylmalate synthase compare
ABZR86_RS08730 -4.6 -9.7 N-acetylornithine carbamoyltransferase compare
ABZR86_RS06735 -4.5 -6.1 ATP phosphoribosyltransferase compare
ABZR86_RS15975 -4.5 -11.8 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS14690 -4.4 -8.5 phosphogluconate dehydratase compare
ABZR86_RS06715 -4.4 -9.1 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS14700 -4.4 -5.2 glucose-6-phosphate dehydrogenase compare
ABZR86_RS02220 -4.4 -17.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS12215 -4.4 -3.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS10475 -4.3 -7.1 shikimate kinase compare
ABZR86_RS06700 -4.3 -8.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS06730 -4.3 -9.9 histidinol dehydrogenase compare
ABZR86_RS19860 -4.2 -14.1 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS11555 -4.2 -11.9 phosphoenolpyruvate carboxylase compare
ABZR86_RS19030 -4.2 -9.0 cystathionine gamma-synthase compare
ABZR86_RS15315 -4.1 -11.4 phenylalanine 4-monooxygenase compare
ABZR86_RS06630 -4.1 -4.5 phosphopyruvate hydratase compare
ABZR86_RS13515 -4.1 -7.7 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS05885 -4.0 -10.9 LysR substrate-binding domain-containing protein compare
ABZR86_RS06000 -4.0 -8.1 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS02230 -4.0 -4.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS18675 -4.0 -6.1 phosphoglycerate kinase compare
ABZR86_RS18775 -3.9 -2.7 nucleotidyltransferase family protein compare
ABZR86_RS15460 -3.9 -2.7 type I glutamate--ammonia ligase compare
ABZR86_RS08010 -3.8 -6.8 phosphoribosylanthranilate isomerase compare
ABZR86_RS06775 -3.8 -16.8 amidophosphoribosyltransferase compare
ABZR86_RS05995 -3.7 -17.1 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS06705 -3.7 -6.5 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS16045 -3.7 -9.1 N-acetylglucosamine-6-phosphate deacetylase compare
ABZR86_RS21020 -3.6 -12.9 ATP-binding protein compare
ABZR86_RS05875 -3.6 -6.1 cysteine synthase A compare
ABZR86_RS21575 -3.5 -9.5 [protein-PII] uridylyltransferase compare
ABZR86_RS09885 -3.4 -2.3 trypsin-like peptidase domain-containing protein compare
ABZR86_RS06260 -3.3 -5.7 MBL fold metallo-hydrolase compare
ABZR86_RS19800 -3.3 -11.8 RNase adapter RapZ compare
ABZR86_RS02450 -3.3 -3.7 hypothetical protein compare
ABZR86_RS18655 -3.2 -8.3 transketolase compare
ABZR86_RS17085 -3.2 -5.3 type II 3-dehydroquinate dehydratase compare
ABZR86_RS12605 -3.2 -3.7 thioredoxin TrxA compare
ABZR86_RS07590 -3.2 -15.7 methionine synthase compare
ABZR86_RS15955 -3.1 -6.0 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS08685 -3.1 -4.6 glutamate 5-kinase compare
ABZR86_RS00830 -3.1 -11.0 glucose-6-phosphate isomerase compare
ABZR86_RS05895 -3.1 -11.5 phosphoadenylyl-sulfate reductase compare
ABZR86_RS02890 -3.1 -8.4 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS19865 -3.1 -2.9 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS05905 -3.0 -7.8 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS18615 -3.0 -2.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS02880 -3.0 -11.4 sulfate ABC transporter substrate-binding protein compare
ABZR86_RS08905 -3.0 -8.3 carbonate dehydratase compare
ABZR86_RS05900 -3.0 -12.0 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS05890 -3.0 -13.2 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS02885 -3.0 -11.5 sulfate ABC transporter permease subunit CysT compare
ABZR86_RS13850 -3.0 -6.5 phosphoribosylamine--glycine ligase compare
ABZR86_RS12885 -2.9 -2.0 magnesium-translocating P-type ATPase compare
ABZR86_RS02895 -2.9 -9.3 ABC transporter ATP-binding protein compare
ABZR86_RS12200 -2.9 -7.5 ribulose-phosphate 3-epimerase compare
ABZR86_RS07585 -2.9 -9.1 homocysteine S-methyltransferase family protein compare
ABZR86_RS12780 -2.9 -4.2 pteridine reductase compare
ABZR86_RS15985 -2.9 -6.4 homoserine dehydrogenase compare
ABZR86_RS19025 -2.9 -4.7 homoserine O-succinyltransferase compare
ABZR86_RS19235 -2.8 -3.7 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS12005 -2.7 -1.8 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS08680 -2.6 -11.2 glutamate-5-semialdehyde dehydrogenase compare
ABZR86_RS07340 -2.5 -2.8 tRNA-Leu compare
ABZR86_RS15640 -2.5 -1.7 orotate phosphoribosyltransferase compare
ABZR86_RS10205 -2.5 -6.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS18875 -2.5 -8.8 glycine cleavage system aminomethyltransferase GcvT compare
ABZR86_RS20775 -2.4 -5.5 TetR/AcrR family transcriptional regulator compare
ABZR86_RS12280 -2.4 -2.2 dihydrolipoyl dehydrogenase compare
ABZR86_RS06590 -2.4 -2.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS10480 -2.3 -2.0 3-dehydroquinate synthase compare
ABZR86_RS21480 -2.3 -8.4 arginase family protein compare
ABZR86_RS15515 -2.3 -7.2 nitrogen regulation protein NR(I) compare
ABZR86_RS12790 -2.3 -5.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
ABZR86_RS12435 -2.3 -11.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS06740 -2.3 -2.4 YerC/YecD family TrpR-related protein compare
ABZR86_RS07180 -2.2 -5.7 RNA polymerase sigma factor RpoE compare
ABZR86_RS08305 -2.2 -13.3 aminomethyl-transferring glycine dehydrogenase compare
ABZR86_RS11825 -2.2 -2.5 citrate synthase compare
ABZR86_RS00570 -2.1 -5.7 acetoacetyl-CoA reductase compare
ABZR86_RS12410 -2.1 -2.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS10710 -2.1 -2.5 transcriptional regulator NrdR compare
ABZR86_RS18880 -2.0 -7.9 glycine cleavage system protein GcvH compare
ABZR86_RS10945 -2.0 -9.7 trehalose-phosphatase compare
ABZR86_RS18450 -1.9 -2.2 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS18780 -1.9 -2.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS05700 -1.9 -3.8 SsrA-binding protein SmpB compare
ABZR86_RS20150 -1.9 -1.1 PilZ domain-containing protein compare
ABZR86_RS05880 -1.9 -6.3 siroheme synthase CysG compare
ABZR86_RS09505 -1.8 -8.2 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR86_RS13380 -1.7 -1.5 Sec-independent protein translocase subunit TatA compare
ABZR86_RS15330 -1.7 -9.1 TetR/AcrR family transcriptional regulator compare
ABZR86_RS17095 -1.7 -6.0 protein-disulfide reductase DsbD compare
ABZR86_RS13370 -1.7 -7.8 twin-arginine translocase subunit TatC compare
ABZR86_RS05820 -1.7 -4.2 GntR family transcriptional regulator compare
ABZR86_RS12545 -1.7 -10.9 transaldolase compare
ABZR86_RS18640 -1.6 -6.7 class I fructose-bisphosphate aldolase compare
ABZR86_RS08015 -1.6 -1.4 tRNA pseudouridine(38-40) synthase TruA compare
ABZR86_RS16745 -1.6 -2.7 hypothetical protein compare
ABZR86_RS02305 -1.6 -1.1 hypothetical protein compare
ABZR86_RS05550 -1.5 -3.5 lipopolysaccharide assembly protein LapB compare
ABZR86_RS19795 -1.5 -6.5 PTS sugar transporter subunit IIA compare
ABZR86_RS17180 -1.5 -8.0 glycosyltransferase compare
ABZR86_RS05690 -1.5 -1.4 RnfH family protein compare
ABZR86_RS11995 -1.5 -5.3 5-formyltetrahydrofolate cyclo-ligase compare
ABZR86_RS19910 -1.4 -2.4 inorganic phosphate transporter compare
ABZR86_RS18830 -1.4 -4.8 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS18815 -1.4 -4.4 FAD-binding protein compare
ABZR86_RS06355 -1.4 -4.7 folate-binding protein YgfZ compare
ABZR86_RS01675 -1.4 -9.1 sugar phosphate isomerase/epimerase compare
ABZR86_RS14705 -1.4 -6.5 GntR family transcriptional regulator compare
ABZR86_RS11845 -1.4 -8.3 RidA family protein compare
ABZR86_RS10155 -1.4 -1.3 HAMP domain-containing sensor histidine kinase compare
ABZR86_RS10840 -1.4 -2.8 Holliday junction branch migration protein RuvA compare
ABZR86_RS18960 -1.4 -5.7 TetR/AcrR family transcriptional regulator compare
ABZR86_RS09845 -1.3 -8.8 DUF1631 domain-containing protein compare
ABZR86_RS01670 -1.3 -4.8 GMC family oxidoreductase compare
ABZR86_RS02185 -1.3 -6.7 tRNA 2-thiouridine(34) synthase MnmA compare
ABZR86_RS02545 -1.3 -2.6 Ref family recombination enhancement nuclease compare
ABZR86_RS16040 -1.3 -1.1 molybdopterin-dependent oxidoreductase compare
ABZR86_RS17150 -1.2 -7.2 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
ABZR86_RS18465 -1.2 -4.4 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR86_RS02285 -1.2 -3.4 DUF1643 domain-containing protein compare
ABZR86_RS14785 -1.2 -1.3 hypothetical protein compare
ABZR86_RS12835 -1.2 -4.3 DedA family protein compare
ABZR86_RS21450 -1.2 -3.4 GspH/FimT family pseudopilin compare
ABZR86_RS08775 -1.2 -2.5 HAD-IA family hydrolase compare
ABZR86_RS19905 -1.2 -3.3 DUF47 domain-containing protein compare
ABZR86_RS00150 -1.2 -1.5 isochorismatase family protein compare
ABZR86_RS20340 -1.2 -0.8 nuclear transport factor 2 family protein compare
ABZR86_RS15990 -1.2 -2.1 hypothetical protein compare
ABZR86_RS09630 -1.2 -5.6 FAD-binding oxidoreductase compare
ABZR86_RS21435 -1.2 -4.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABZR86_RS01680 -1.1 -7.6 nucleoside permease compare
ABZR86_RS09145 -1.1 -1.1 hypothetical protein compare
ABZR86_RS06940 -1.1 -6.2 hypothetical protein compare
ABZR86_RS13265 -1.1 -4.6 50S ribosomal protein L33 compare
ABZR86_RS22190 -1.1 -1.2 hypothetical protein compare
ABZR86_RS20195 -1.1 -1.3 flagellar hook-length control protein FliK compare
ABZR86_RS12895 -1.1 -5.1 heme o synthase compare
ABZR86_RS10870 -1.1 -1.9 FmdB family zinc ribbon protein compare
ABZR86_RS16345 -1.0 -7.1 NADP-dependent isocitrate dehydrogenase compare
ABZR86_RS16770 -1.0 -1.3 phage holin family protein compare
ABZR86_RS09485 -1.0 -1.0 SUF system Fe-S cluster assembly regulator compare
ABZR86_RS19225 -1.0 -2.7 site-specific tyrosine recombinase XerD compare
ABZR86_RS03760 -1.0 -1.3 hypothetical protein compare
ABZR86_RS01685 -1.0 -3.5 Gfo/Idh/MocA family oxidoreductase compare
ABZR86_RS15305 -1.0 -3.0 MbcA/ParS/Xre antitoxin family protein compare
ABZR86_RS09935 -1.0 -1.2 DUF4105 domain-containing protein compare
ABZR86_RS01665 -1.0 -3.0 gluconate 2-dehydrogenase subunit 3 family protein compare
ABZR86_RS12905 -1.0 -3.3 hypothetical protein compare
ABZR86_RS20700 -1.0 -1.1 transcriptional repressor AgaR compare
ABZR86_RS00955 -1.0 -3.1 hypothetical protein compare
ABZR86_RS07235 -0.9 -1.0 tRNA-Asp compare
ABZR86_RS02415 -0.9 -2.3 hypothetical protein compare
ABZR86_RS07660 -0.9 -2.7 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS02500 -0.9 -1.5 hypothetical protein compare
ABZR86_RS14795 -0.9 -2.5 hypothetical protein compare
ABZR86_RS09875 -0.9 -5.8 cytochrome bc complex cytochrome b subunit compare
ABZR86_RS05130 -0.9 -1.2 DUF6597 domain-containing transcriptional factor compare
ABZR86_RS03265 -0.9 -1.4 acyl carrier protein compare
ABZR86_RS08945 -0.9 -6.5 C40 family peptidase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Cellobiose in Dyella japonica UNC79MFTsu3.2

For carbon source D-Cellobiose across organisms