Experiment set2IT012 for Bifidobacterium breve UCC2003

Compare to:

CDM1 without Proline

200 most important genes:

  gene name fitness t score description  
BBR_RS11210 -7.5 -5.2 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS18695 -7.3 -7.1 PRD domain-containing protein compare
BBR_RS11720 -7.2 -5.0 DUF2469 domain-containing protein compare
BBR_RS18735 -6.6 -19.6 hypothetical protein compare
BBR_RS11205 -6.5 -6.3 HPr family phosphocarrier protein compare
BBR_RS16820 -6.3 -4.3 RNA polymerase sigma factor RpoE compare
BBR_RS11015 -6.3 -7.5 aspartate kinase compare
BBR_RS17375 -6.3 -4.3 amino acid ABC transporter ATP-binding protein compare
BBR_RS11025 -6.2 -14.0 aspartate-semialdehyde dehydrogenase compare
BBR_RS19445 -6.2 -24.1 glutamate 5-kinase compare
BBR_RS12900 -6.1 -3.7 DeoR/GlpR transcriptional regulator compare
BBR_RS14215 -6.1 -4.2 peptidase compare
BBR_RS11540 -6.0 -3.9 DUF1727 domain-containing protein compare
BBR_RS17615 -6.0 -8.2 phosphoserine phosphatase SerB compare
BBR_RS17370 -6.0 -5.8 ABC transporter substrate-binding protein compare
BBR_RS12235 -5.9 -1.8 hypothetical protein compare
BBR_RS18955 -5.9 -12.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS17990 -5.7 -13.3 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS19535 -5.7 -11.6 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS14365 -5.6 -5.5 hypothetical protein compare
BBR_RS11020 -5.6 -14.9 ACT domain-containing protein compare
BBR_RS10445 -5.5 -10.0 HlyC/CorC family transporter compare
BBR_RS19475 -5.5 -22.6 AEC family transporter compare
BBR_RS18570 -5.5 -10.6 phosphoserine transaminase compare
BBR_RS15755 -5.5 -2.9 hypothetical protein compare
BBR_RS13040 -5.5 -3.8 CHAP domain-containing protein compare
BBR_RS18690 -5.5 -5.4 diacylglycerol kinase compare
BBR_RS17365 -5.5 -5.3 ABC transporter permease compare
BBR_RS10620 -5.5 -6.5 phosphoprotein phosphatase compare
BBR_RS14625 -5.4 -3.8 pyrroline-5-carboxylate reductase compare
BBR_RS15680 -5.4 -6.5 succinate--CoA ligase subunit alpha compare
BBR_RS14210 -5.4 -3.7 hypothetical protein compare
BBR_RS14075 -5.4 -8.2 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS10660 -5.2 -23.6 esterase compare
BBR_RS16970 -5.0 -6.0 phosphoglycerate dehydrogenase compare
BBR_RS17290 -5.0 -12.1 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS14070 -4.8 -3.3 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS15675 -4.7 -7.8 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS15070 -4.7 -3.2 endolytic transglycosylase MltG compare
BBR_RS19760 -4.6 -2.8 polysaccharide ABC transporter ATPase compare
BBR_RS19240 -4.6 -15.7 LacI family transcriptional regulator compare
BBR_RS19905 -4.5 -1.4 methionine--tRNA ligase compare
BBR_RS12370 -4.5 -1.4 cell division protein compare
BBR_RS14280 -4.5 -1.7 dephospho-CoA kinase compare
BBR_RS13035 -4.5 -3.0 ABC transporter permease compare
BBR_RS15750 -4.5 -1.4 hypothetical protein compare
BBR_RS15170 -4.4 -6.1 HlyC/CorC family transporter compare
BBR_RS14205 -4.4 -6.0 hypothetical protein compare
BBR_RS16750 -4.3 -3.0 ParA family protein compare
BBR_RS19945 -4.2 -11.7 MarR family transcriptional regulator compare
BBR_RS12995 -4.2 -8.7 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS20920 -4.1 -6.0 hypothetical protein compare
BBR_RS10625 -4.1 -3.5 FHA domain-containing protein compare
BBR_RS19470 -4.0 -22.7 succinyl-diaminopimelate desuccinylase compare
BBR_RS12460 -4.0 -8.0 LacI family DNA-binding transcriptional regulator compare
BBR_RS13830 -3.9 -1.2 DUF4191 domain-containing protein compare
BBR_RS12545 -3.9 -6.5 DUF4012 domain-containing protein compare
BBR_RS19740 -3.9 -18.2 DUF2142 domain-containing protein compare
BBR_RS17460 -3.8 -8.9 TPM domain-containing protein compare
BBR_RS19555 -3.8 -26.6 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BBR_RS15180 -3.8 -10.6 long-chain fatty acid--CoA ligase compare
BBR_RS16540 -3.7 -5.8 XRE family transcriptional regulator compare
BBR_RS19160 -3.6 -1.5 phosphate ABC transporter permease subunit PstC compare
BBR_RS17905 -3.6 -27.1 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS16155 -3.6 -8.5 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS16955 -3.5 -3.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS16675 -3.5 -4.2 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS16905 -3.5 -5.6 hypothetical protein compare
BBR_RS19700 -3.4 -22.4 ATP-dependent chaperone ClpB compare
BBR_RS13700 -3.4 -12.6 diaminopimelate epimerase compare
BBR_RS20465 -3.4 -11.1 chromosome partitioning protein compare
BBR_RS12660 -3.4 -10.4 EpsG family protein compare
BBR_RS14370 -3.3 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS15085 -3.3 -1.7 3-dehydroquinate synthase compare
BBR_RS19190 -3.3 -7.4 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS16600 -3.2 -12.3 aconitate hydratase AcnA compare
BBR_RS16670 -3.2 -4.2 hypothetical protein compare
BBR_RS14265 -3.2 -7.5 Solute-binding protein of ABC transporter system for metals compare
BBR_RS15520 -3.2 -3.1 shikimate 5-dehydrogenase compare
BBR_RS11515 -3.1 -16.8 ammonium transporter compare
BBR_RS16610 -3.1 -5.7 hypothetical protein compare
BBR_RS13820 -3.0 -1.8 ATP-binding protein compare
BBR_RS19070 -3.0 -1.3 50S ribosomal protein L33 compare
BBR_RS19120 -3.0 -11.4 helicase compare
BBR_RS17360 -3.0 -6.2 amino acid ABC transporter permease compare
BBR_RS12760 -3.0 -7.5 hypothetical protein compare
BBR_RS13125 -2.9 -1.1 ABC transporter permease compare
BBR_RS11680 -2.8 -12.2 23S rRNA methyltransferase compare
BBR_RS15880 -2.8 -2.7 hypothetical protein compare
BBR_RS18725 -2.8 -4.2 ribonuclease HI compare
BBR_RS14540 -2.8 -3.8 Na+/H+ antiporter NhaA compare
BBR_RS13030 -2.7 -3.2 cell division ATP-binding protein FtsE compare
BBR_RS13070 -2.7 -1.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS15305 -2.7 -5.6 hypothetical protein compare
BBR_RS19355 -2.7 -1.9 tRNA-Gly compare
BBR_RS11505 -2.7 -15.6 TetR/AcrR family transcriptional regulator compare
BBR_RS19165 -2.7 -3.1 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS11675 -2.7 -2.4 hypothetical protein compare
BBR_RS15080 -2.6 -3.5 chorismate synthase compare
BBR_RS19155 -2.6 -7.0 phosphate ABC transporter, permease protein PstA compare
BBR_RS19375 -2.5 -2.1 acyl-CoA carboxylase subunit beta compare
BBR_RS19450 -2.5 -1.8 GTPase ObgE compare
BBR_RS20930 -2.5 -2.6 hypothetical protein compare
BBR_RS13740 -2.4 -4.9 DUF3052 domain-containing protein compare
BBR_RS19540 -2.4 -1.7 homoserine dehydrogenase compare
BBR_RS12710 -2.4 -4.7 hypothetical protein compare
BBR_RS13300 -2.4 -1.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS12705 -2.4 -10.8 hypothetical protein compare
BBR_RS13770 -2.3 -3.0 DNA repair protein RecO compare
BBR_RS16940 -2.3 -3.3 hypothetical protein compare
BBR_RS15340 -2.3 -3.5 hypothetical protein compare
BBR_RS12635 -2.3 -12.5 polysaccharide biosynthesis protein compare
BBR_RS15300 -2.3 -3.7 peroxiredoxin compare
BBR_RS16425 -2.3 -3.3 DUF3071 domain-containing protein compare
BBR_RS11470 -2.3 -1.3 6-phosphogluconolactonase compare
BBR_RS18565 -2.3 -1.4 CHAP domain-containing protein compare
BBR_RS13215 -2.3 -2.0 hypothetical protein compare
BBR_RS12805 -2.2 -2.5 hypothetical protein compare
BBR_RS14190 -2.2 -7.9 transcriptional regulator compare
BBR_RS13960 -2.2 -1.5 thiamine biosynthesis protein ThiS compare
BBR_RS12770 -2.2 -3.7 hypothetical protein compare
BBR_RS12640 -2.2 -10.7 glycosyl transferase compare
BBR_RS15860 -2.2 -0.9 DUF2316 domain-containing protein compare
BBR_RS15090 -2.2 -0.9 type II 3-dehydroquinate dehydratase compare
BBR_RS15020 -2.2 -2.3 membrane protein compare
BBR_RS19095 -2.2 -9.1 magnesium transporter compare
BBR_RS19395 -2.2 -1.8 hypothetical protein compare
BBR_RS19050 -2.2 -13.6 succinyldiaminopimelate transaminase compare
BBR_RS20460 -2.2 -5.3 chromosome partitioning protein ParB compare
BBR_RS17495 -2.1 -8.1 DUF58 domain-containing protein compare
BBR_RS17500 -2.1 -5.9 hypothetical protein compare
BBR_RS19125 -2.1 -9.4 hypothetical protein compare
BBR_RS15805 -2.1 -4.6 prolipoprotein diacylglyceryl transferase compare
BBR_RS20935 -2.1 -2.2 hypothetical protein compare
BBR_RS10755 -2.1 -4.7 adenylosuccinate synthase compare
BBR_RS20430 -2.0 -5.2 hypothetical protein compare
BBR_RS14665 -2.0 -6.2 MATE family efflux transporter compare
BBR_RS17440 -2.0 -1.5 DUF3027 domain-containing protein compare
BBR_RS18700 -2.0 -3.3 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS14330 -2.0 -1.4 glycogen debranching enzyme GlgX compare
BBR_RS19270 -2.0 -1.0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS16430 -2.0 -1.8 nucleotide pyrophosphatase compare
BBR_RS20450 -2.0 -12.7 murein biosynthesis integral membrane protein MurJ compare
BBR_RS12975 -1.9 -10.0 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS11355 -1.9 -4.9 hypothetical protein compare
BBR_RS14655 -1.9 -4.5 AraC family transcriptional regulator compare
BBR_RS12645 -1.9 -5.2 acyltransferase compare
BBR_RS18215 -1.9 -5.7 AI-2E family transporter compare
BBR_RS14765 -1.9 -1.3 hypothetical protein compare
BBR_RS17135 -1.9 -1.1 RluA family pseudouridine synthase compare
BBR_RS13450 -1.9 -3.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS18175 -1.9 -1.2 GTP cyclohydrolase I FolE compare
BBR_RS17720 -1.8 -9.7 CRISPR-associated helicase/endonuclease Cas3 compare
BBR_RS12630 -1.8 -10.8 glycosyltransferase family 1 protein compare
BBR_RS11715 -1.8 -11.8 N-acetyltransferase compare
BBR_RS17505 -1.8 -8.1 VWA domain-containing protein compare
BBR_RS16965 -1.8 -1.2 ATP-dependent DNA helicase compare
BBR_RS12980 -1.8 -10.2 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS13455 -1.8 -2.6 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS12810 -1.8 -7.0 hypothetical protein compare
BBR_RS18550 -1.8 -6.5 universal stress protein compare
BBR_RS20455 -1.8 -7.7 thioredoxin-disulfide reductase compare
BBR_RS12365 -1.8 -5.8 DUF177 domain-containing protein compare
BBR_RS13370 -1.8 -2.1 phosphoribosylamine--glycine ligase compare
BBR_RS16275 -1.8 -1.1 leucine--tRNA ligase compare
BBR_RS20840 -1.7 -2.9 hypothetical protein compare
BBR_RS12700 -1.7 -6.6 hypothetical protein compare
BBR_RS12905 -1.7 -1.9 galactose-1-phosphate uridylyltransferase compare
BBR_RS12665 -1.7 -8.5 acyltransferase compare
BBR_RS11500 -1.7 -8.6 glycosyltransferase family 2 protein compare
BBR_RS13510 -1.7 -6.0 LysR family transcriptional regulator compare
BBR_RS15335 -1.7 -2.8 hypothetical protein compare
BBR_RS20825 -1.7 -1.5 hypothetical protein compare
BBR_RS12650 -1.6 -7.9 polysaccharide pyruvyl transferase family protein compare
BBR_RS13750 -1.6 -2.0 DivIVA domain-containing protein compare
BBR_RS15355 -1.6 -2.7 DUF3800 domain-containing protein compare
BBR_RS10285 -1.6 -1.8 membrane protein compare
BBR_RS18745 -1.6 -1.8 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS17490 -1.6 -8.2 MoxR family ATPase compare
BBR_RS19645 -1.6 -7.4 RNA degradosome polyphosphate kinase compare
BBR_RS14585 -1.6 -1.4 hypothetical protein compare
BBR_RS12045 -1.6 -3.7 hypothetical protein compare
BBR_RS16445 -1.6 -4.1 hypothetical protein compare
BBR_RS16400 -1.5 -1.6 hypothetical protein compare
BBR_RS14700 -1.5 -3.0 type II toxin-antitoxin system PemK/MazF family toxin compare
BBR_RS16695 -1.5 -3.5 PadR family transcriptional regulator compare
BBR_RS11770 -1.5 -3.3 chorismate mutase compare
BBR_RS15130 -1.5 -1.6 metal-sulfur cluster assembly factor compare
BBR_RS14260 -1.5 -0.9 ABC transporter ATP-binding protein compare
BBR_RS10900 -1.5 -1.0 molecular chaperone DnaK compare
BBR_RS18050 -1.5 -1.8 threonylcarbamoyl-AMP synthase compare
BBR_RS19390 -1.5 -1.4 hypothetical protein compare
BBR_RS18375 -1.5 -6.4 ATP-dependent helicase compare
BBR_RS16655 -1.4 -4.9 tyrosine recombinase XerC compare
BBR_RS10910 -1.4 -7.3 molecular chaperone DnaJ compare
BBR_RS20690 -1.4 -1.9 hypothetical protein compare
BBR_RS16975 -1.4 -2.8 transcriptional repressor NrdR compare
BBR_RS19745 -1.4 -9.6 LTA synthase family protein compare
BBR_RS20750 -1.4 -1.3 GntR family transcriptional regulator compare
BBR_RS10740 -1.4 -1.4 tRNA-Gly compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in nutrient dropout experiments

For nutrient dropout no Proline across organisms