Experiment set2IT011 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
AO353_21625 -2.6 -2.8 Fe/S biogenesis protein NfuA compare
AO353_18540 -2.0 -2.2 pseudouridine synthase compare
AO353_00105 -1.9 -2.5 hypothetical protein compare
AO353_14220 -1.9 -2.3 ribosomal large subunit pseudouridine synthase D compare
AO353_05130 -1.9 -2.4 anti-anti-sigma factor compare
AO353_00825 -1.8 -3.6 porin compare
AO353_05625 -1.8 -2.3 transcription elongation factor GreA compare
AO353_07155 -1.7 -6.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_13925 -1.7 -2.7 XRE family transcriptional regulator compare
AO353_11770 -1.7 -1.8 molecular chaperone Hsp33 compare
AO353_10455 -1.6 -2.2 tRNA modification GTPase MnmE compare
AO353_11455 -1.5 -3.0 hypothetical protein compare
AO353_03615 -1.5 -2.2 cold-shock protein compare
AO353_19090 -1.4 -1.8 MarR family transcriptional regulator compare
AO353_07355 -1.4 -3.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_07075 -1.4 -4.3 elongation factor Tu compare
AO353_04175 -1.4 -4.0 glycerol uptake facilitator GlpF compare
AO353_12365 -1.4 -3.3 phosphoribosyl-AMP cyclohydrolase compare
AO353_09785 -1.4 -3.1 hypothetical protein compare
AO353_02250 -1.4 -2.7 chorismate synthase compare
AO353_23910 -1.4 -2.4 response regulator compare
AO353_14495 -1.4 -7.2 acetolactate synthase 3 catalytic subunit compare
AO353_06720 -1.4 -2.1 NrdR family transcriptional regulator compare
AO353_09240 -1.4 -2.4 acetylglutamate kinase compare
AO353_14740 -1.3 -3.0 GTP-binding protein compare
AO353_01915 -1.3 -1.7 GlcG protein compare
AO353_04190 -1.3 -1.5 glycerol-3-phosphate dehydrogenase compare
AO353_00430 -1.3 -3.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_05415 -1.3 -2.6 hypothetical protein compare
AO353_11730 -1.3 -5.9 glutamate--cysteine ligase compare
AO353_02070 -1.3 -4.8 prephenate dehydratase compare
AO353_09900 -1.3 -7.7 phosphate ABC transporter permease compare
AO353_11165 -1.2 -5.9 hypothetical protein compare
AO353_08110 -1.2 -4.3 glutathione synthetase compare
AO353_12930 -1.2 -2.4 GlcNAc-PI de-N-acetylase compare
AO353_03795 -1.2 -3.0 fumarate hydratase compare
AO353_26090 -1.2 -2.4 hypothetical protein compare
AO353_12420 -1.2 -2.9 predicted FeS cluster maintenance protein (from data) compare
AO353_08685 -1.2 -5.4 N-acetylglutamate synthase compare
AO353_06040 -1.1 -2.4 exodeoxyribonuclease V subunit alpha compare
AO353_14420 -1.1 -3.2 molecular chaperone DnaK compare
AO353_01615 -1.1 -3.2 pilus assembly protein PilA compare
AO353_27215 -1.1 -2.2 hypothetical protein compare
AO353_06850 -1.1 -3.2 MFS transporter compare
AO353_20185 -1.1 -4.3 DNA-binding protein compare
AO353_20510 -1.1 -2.0 amidase compare
AO353_03520 -1.1 -2.4 hypothetical protein compare
AO353_26945 -1.1 -1.9 transcriptional regulator compare
AO353_09745 -1.1 -1.7 hypothetical protein compare
AO353_08115 -1.1 -4.3 energy transducer TonB compare
AO353_24130 -1.1 -2.3 hypothetical protein compare
AO353_10670 -1.1 -4.4 shikimate dehydrogenase compare
AO353_09890 -1.1 -3.4 phosphate ABC transporter ATP-binding protein compare
AO353_26070 -1.1 -2.2 hypothetical protein compare
AO353_02280 -1.0 -1.3 DNA mismatch repair protein MutS compare
AO353_06495 -1.0 -2.8 gamma-glutamyl phosphate reductase compare
AO353_09000 -1.0 -3.2 argininosuccinate lyase compare
AO353_23245 -1.0 -1.7 DNA-3-methyladenine glycosylase compare
AO353_22645 -1.0 -1.9 hypothetical protein compare
AO353_20565 -1.0 -1.8 tRNA-Ala compare
AO353_20170 -1.0 -3.4 trigger factor compare
AO353_14400 -1.0 -3.0 Fis family transcriptional regulator compare
AO353_12650 -1.0 -1.2 hypothetical protein compare
AO353_27445 -1.0 -3.0 hypothetical protein compare
AO353_08600 -1.0 -2.6 TetR family transcriptional regulator compare
AO353_13965 -1.0 -3.2 large-conductance mechanosensitive channel compare
AO353_00635 -1.0 -2.3 hypothetical protein compare
AO353_03230 -1.0 -2.9 lysine transporter LysE compare
AO353_03670 -1.0 -3.2 ornithine acetyltransferase compare
AO353_27720 -1.0 -3.0 cupin compare
AO353_15480 -1.0 -1.4 hypothetical protein compare
AO353_12105 -1.0 -4.3 peptidase S41 compare
AO353_20925 -1.0 -2.2 hypothetical protein compare
AO353_08165 -1.0 -1.9 pyrroline-5-carboxylate reductase compare
AO353_06045 -0.9 -4.0 exodeoxyribonuclease V subunit beta compare
AO353_13140 -0.9 -3.7 tRNA dimethylallyltransferase compare
AO353_24405 -0.9 -2.2 ArsR family transcriptional regulator compare
AO353_10055 -0.9 -6.0 DNA helicase II compare
AO353_13220 -0.9 -4.0 hypothetical protein compare
AO353_18425 -0.9 -2.7 hypothetical protein compare
AO353_20865 -0.9 -1.6 cold-shock protein compare
AO353_12345 -0.9 -1.6 twin-arginine protein translocation system subunit TatC compare
AO353_02465 -0.9 -1.8 hypothetical protein compare
AO353_19750 -0.9 -1.7 diaminopimelate epimerase compare
AO353_18320 -0.9 -3.4 hypothetical protein compare
AO353_04055 -0.9 -1.7 methionine--tRNA ligase compare
AO353_07900 -0.9 -2.2 hypothetical protein compare
AO353_02975 -0.9 -1.6 aspartate kinase compare
AO353_01990 -0.9 -4.1 UDP-N-acetylglucosamine 2-epimerase compare
AO353_08980 -0.9 -2.3 heme biosynthesis operon protein HemX compare
AO353_16765 -0.9 -1.8 hypothetical protein compare
AO353_26870 -0.9 -2.0 AP endonuclease compare
AO353_21100 -0.9 -1.7 DNA-binding protein compare
AO353_27710 -0.9 -1.3 DNA repair protein compare
AO353_10710 -0.9 -3.2 tryptophan synthase subunit beta compare
AO353_01190 -0.9 -1.0 hypothetical protein compare
AO353_04520 -0.9 -2.8 elongation factor 4 compare
AO353_05150 -0.8 -2.8 ABC transporter ATP-binding protein compare
AO353_19610 -0.8 -2.6 hypothetical protein compare
AO353_22195 -0.8 -1.0 metal ABC transporter permease compare
AO353_17855 -0.8 -1.7 ribonuclease D compare
AO353_14500 -0.8 -3.3 acetolactate synthase 3 regulatory subunit compare
AO353_01595 -0.8 -1.7 Flp pilus assembly protein CpaB compare
AO353_02520 -0.8 -1.9 sodium transporter compare
AO353_13160 -0.8 -1.7 membrane protease HflC compare
AO353_09050 -0.8 -2.1 recombinase XerC compare
AO353_07325 -0.8 -1.3 diadenosine tetraphosphatase compare
AO353_09905 -0.8 -4.7 phosphate-binding protein compare
AO353_03770 -0.8 -2.5 hypothetical protein compare
AO353_06710 -0.8 -1.4 riboflavin synthase subunit alpha compare
AO353_09135 -0.8 -1.2 cytochrome C compare
AO353_24415 -0.8 -1.4 glutamine ABC transporter ATP-binding protein compare
AO353_20975 -0.8 -3.4 hypothetical protein compare
AO353_12500 -0.8 -1.3 shikimate kinase compare
AO353_17730 -0.8 -2.2 hypothetical protein compare
AO353_18765 -0.8 -1.9 hypothetical protein compare
AO353_15785 -0.8 -3.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_14115 -0.8 -3.2 gamma-glutamyl kinase compare
AO353_14380 -0.8 -2.6 pantoate--beta-alanine ligase compare
AO353_18325 -0.8 -1.6 hypothetical protein compare
AO353_26220 -0.8 -1.7 hypothetical protein compare
AO353_26055 -0.8 -1.4 hypothetical protein compare
AO353_26160 -0.8 -2.9 hypothetical protein compare
AO353_03585 -0.8 -1.7 ATP-dependent DNA helicase RuvA compare
AO353_08120 -0.8 -2.1 hypothetical protein compare
AO353_00750 -0.8 -2.1 GntR family transcriptional regulator compare
AO353_15905 -0.8 -3.5 outer membrane protein assembly factor BamB compare
AO353_10730 -0.8 -0.9 hypothetical protein compare
AO353_00235 -0.8 -1.9 transcriptional regulator compare
AO353_24275 -0.8 -1.2 transcriptional regulator compare
AO353_02175 -0.8 -1.7 carbon storage regulator compare
AO353_02685 -0.8 -1.8 phosphoribosylglycinamide formyltransferase compare
AO353_04800 -0.8 -2.4 short-chain dehydrogenase compare
AO353_27695 -0.8 -3.3 isocitrate dehydrogenase compare
AO353_19770 -0.8 -1.6 peptidase compare
AO353_27420 -0.7 -2.0 DNA-binding protein compare
AO353_23170 -0.7 -2.0 short-chain dehydrogenase compare
AO353_13200 -0.7 -4.4 exoribonuclease R compare
AO353_16030 -0.7 -2.2 peptidase inhibitor I42 compare
AO353_02620 -0.7 -2.8 threonine-phosphate decarboxylase compare
AO353_11750 -0.7 -1.5 ATPase compare
AO353_21770 -0.7 -1.8 3-hydroxybutyrate dehydrogenase compare
AO353_06415 -0.7 -2.3 hypothetical protein compare
AO353_14060 -0.7 -2.1 hypothetical protein compare
AO353_24970 -0.7 -2.2 formate dehydrogenase compare
AO353_16940 -0.7 -2.6 deoxycytidine triphosphate deaminase compare
AO353_25320 -0.7 -1.7 phosphoribosyl-dephospho-CoA transferase compare
AO353_17475 -0.7 -2.6 hypothetical protein compare
AO353_03215 -0.7 -2.3 pyridoxamine 5'-phosphate oxidase compare
AO353_21425 -0.7 -1.9 hypothetical protein compare
AO353_19250 -0.7 -1.2 molybdenum cofactor guanylyltransferase compare
AO353_01975 -0.7 -3.6 glycosyl transferase compare
AO353_12895 -0.7 -2.8 lipopolysaccharide kinase compare
AO353_07460 -0.7 -1.4 DNA-binding protein compare
AO353_08875 -0.7 -1.5 amino acid ABC transporter ATP-binding protein compare
AO353_27155 -0.7 -1.2 hypothetical protein compare
AO353_08645 -0.7 -1.7 transporter compare
AO353_28450 -0.7 -1.6 LysR family transcriptional regulator compare
AO353_25575 -0.7 -1.9 GNAT family acetyltransferase compare
AO353_04565 -0.7 -2.5 nucleoid-associated protein compare
AO353_14990 -0.7 -1.4 hypothetical protein compare
AO353_25845 -0.7 -1.4 GNAT family acetyltransferase compare
AO353_17820 -0.7 -2.1 5-carboxymethyl-2-hydroxymuconate isomerase compare
AO353_08265 -0.7 -2.5 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_06320 -0.7 -1.9 AsnC family transcriptional regulator compare
AO353_29000 -0.7 -1.5 pyridoxal-5'-phosphate-dependent protein subunit beta compare
AO353_11915 -0.7 -3.4 agmatine deiminase compare
AO353_16350 -0.7 -1.9 SAM-dependent methyltransferase compare
AO353_12915 -0.7 -3.4 carbamoyltransferase compare
AO353_13685 -0.7 -2.2 3-dehydroquinate dehydratase compare
AO353_15830 -0.7 -1.4 transcriptional regulator compare
AO353_00490 -0.7 -1.5 PasA protein compare
AO353_15460 -0.7 -3.0 cytochrome o ubiquinol oxidase subunit III compare
AO353_14775 -0.7 -2.9 hypothetical protein compare
AO353_04355 -0.7 -1.0 homoserine dehydrogenase compare
AO353_15465 -0.7 -2.8 cytochrome C oxidase compare
AO353_05240 -0.7 -1.4 rod shape-determining protein MreD compare
AO353_23165 -0.7 -1.8 cupin compare
AO353_05145 -0.7 -2.8 ABC transporter permease compare
AO353_25050 -0.7 -2.0 AraC family transcriptional regulator compare
AO353_07315 -0.7 -1.1 rRNA methyltransferase compare
AO353_22305 -0.7 -1.2 LysR family transcriptional regulator compare
AO353_21465 -0.6 -1.2 cation:proton antiporter compare
AO353_04650 -0.6 -1.3 molybdenum cofactor biosynthesis protein MoaE compare
AO353_13580 -0.6 -1.7 copper resistance protein CopZ compare
AO353_16825 -0.6 -2.4 hypothetical protein compare
AO353_17270 -0.6 -2.1 hypothetical protein compare
AO353_22655 -0.6 -3.0 hypothetical protein compare
AO353_13800 -0.6 -1.8 hypothetical protein compare
AO353_15050 -0.6 -1.7 nitrate transport permease nrtB compare
AO353_27415 -0.6 -1.3 hypothetical protein compare
AO353_02060 -0.6 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_17290 -0.6 -2.4 multidrug transporter compare
AO353_27535 -0.6 -1.4 3-hydroxybutyryl-CoA dehydrogenase compare
AO353_03015 -0.6 -2.0 arginine N-succinyltransferase compare
AO353_06220 -0.6 -2.4 IclR family transcriptional regulator compare
AO353_24985 -0.6 -1.7 L-seryl-tRNA(Sec) selenium transferase compare
AO353_02710 -0.6 -4.1 (p)ppGpp synthetase compare
AO353_16810 -0.6 -1.8 recombinase RecX compare
AO353_26840 -0.6 -1.3 RND transporter compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in lb experiments