Experiment set2IT011 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
AO353_28295 +1.7 2.1 GNAT family acetyltransferase compare
AO353_07645 +1.5 1.9 sarcosine oxidase subunit gamma compare
AO353_00540 +1.4 3.4 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_23410 +1.4 1.8 hypothetical protein compare
AO353_22520 +1.4 1.7 hypothetical protein compare
AO353_02885 +1.4 1.9 flagellar biosynthesis protein FlgN compare
AO353_21530 +1.4 3.6 type VI secretion protein compare
AO353_15410 +1.4 2.0 hypothetical protein compare
AO353_22280 +1.4 2.0 hypothetical protein compare
AO353_04410 +1.3 2.7 phosphoribosylglycinamide formyltransferase compare
AO353_02005 +1.3 1.6 hypothetical protein compare
AO353_27380 +1.3 2.1 pyocin R2, holin compare
AO353_11945 +1.2 1.4 4-oxalocrotonate tautomerase compare
AO353_05880 +1.2 2.0 plasmid stabilization protein compare
AO353_10780 +1.1 2.0 DNA-binding protein compare
AO353_21455 +1.1 1.7 cation:proton antiporter compare
AO353_29005 +1.1 1.7 hypothetical protein compare
AO353_18485 +1.1 2.9 nitroreductase compare
AO353_28495 +1.1 2.5 hypothetical protein compare
AO353_19520 +1.1 3.1 quinohemoprotein amine dehydrogenase subunit alpha compare
AO353_22135 +1.1 2.4 anaerobic ribonucleoside-triphosphate reductase activating protein compare
AO353_17935 +1.0 2.7 hypothetical protein compare
AO353_19840 +1.0 2.3 hypothetical protein compare
AO353_26440 +1.0 2.0 hypothetical protein compare
AO353_26810 +1.0 2.5 (2Fe-2S)-binding protein compare
AO353_24540 +1.0 2.9 hypothetical protein compare
AO353_28435 +1.0 3.4 AraC family transcriptional regulator compare
AO353_00260 +1.0 1.5 hypothetical protein compare
AO353_13420 +0.9 1.9 hypothetical protein compare
AO353_06100 +0.9 1.3 thymidylate synthase compare
AO353_03210 +0.9 2.4 GNAT family acetyltransferase compare
AO353_03920 +0.9 3.0 acetyltransferase compare
AO353_04580 +0.9 2.7 GIY-YIG nuclease compare
AO353_10510 +0.9 1.3 benzoate transporter compare
AO353_21355 +0.9 2.1 xylose isomerase compare
AO353_28640 +0.9 1.9 hypothetical protein compare
AO353_17885 +0.9 1.4 hypothetical protein compare
AO353_16740 +0.9 2.3 phage tail protein compare
AO353_23850 +0.9 2.7 nitrilase compare
AO353_11940 +0.8 1.9 hypothetical protein compare
AO353_26990 +0.8 1.5 hypothetical protein compare
AO353_26390 +0.8 1.2 glyoxalase compare
AO353_11695 +0.8 2.0 hypothetical protein compare
AO353_19605 +0.8 1.4 hypothetical protein compare
AO353_07685 +0.8 2.5 hypothetical protein compare
AO353_23945 +0.8 1.1 hypothetical protein compare
AO353_03205 +0.8 2.4 dehydrogenase compare
AO353_10320 +0.8 1.3 hypothetical protein compare
AO353_16055 +0.8 1.9 hypothetical protein compare
AO353_23575 +0.8 2.6 hypothetical protein compare
AO353_15730 +0.8 1.0 hypothetical protein compare
AO353_17445 +0.8 1.6 hypothetical protein compare
AO353_27350 +0.7 1.5 hypothetical protein compare
AO353_18575 +0.7 2.8 tyrosine aminotransferase (EC 2.6.1.57) (from data) compare
AO353_04775 +0.7 2.5 hypothetical protein compare
AO353_16440 +0.7 1.8 ArsC family transcriptional regulator compare
AO353_05280 +0.7 1.6 4-carboxymuconolactone decarboxylase compare
AO353_23495 +0.7 1.3 SAM-dependent methyltransferase compare
AO353_09560 +0.7 0.7 type VI secretion protein compare
AO353_24850 +0.7 2.2 aspartate aminotransferase compare
AO353_26415 +0.7 1.9 hypothetical protein compare
AO353_04240 +0.7 1.1 chemotaxis protein CheW compare
AO353_22360 +0.7 1.6 ABC transporter ATP-binding protein compare
AO353_12090 +0.7 1.4 imidazole glycerol phosphate synthase subunit HisF compare
AO353_25220 +0.7 1.9 hypothetical protein compare
AO353_15900 +0.7 1.2 GTP-binding protein compare
AO353_28195 +0.7 2.3 panthothenate synthetase compare
AO353_18510 +0.7 1.7 hypothetical protein compare
AO353_10090 +0.7 2.6 hypothetical protein compare
AO353_28815 +0.7 1.4 hypothetical protein compare
AO353_19295 +0.7 1.3 hypothetical protein compare
AO353_28455 +0.7 2.8 FMN-dependent NADH-azoreductase compare
AO353_25340 +0.7 1.8 triphosphoribosyl-dephospho-CoA synthase MdcB compare
AO353_00810 +0.7 1.3 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_11785 +0.7 2.8 hypothetical protein compare
AO353_22475 +0.7 1.9 alkaline phosphatase compare
AO353_15560 +0.7 2.2 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
AO353_19070 +0.7 1.5 hypothetical protein compare
AO353_27950 +0.7 1.1 hypothetical protein compare
AO353_25490 +0.7 1.5 transcriptional regulator compare
AO353_18715 +0.7 1.0 histidine kinase compare
AO353_16530 +0.7 0.9 ribonuclease HII compare
AO353_25700 +0.7 1.4 hypothetical protein compare
AO353_25385 +0.7 1.6 molybdenum cofactor biosynthesis protein MoaC compare
AO353_19780 +0.7 2.3 histidine kinase compare
AO353_07250 +0.7 1.4 polyamine ABC transporter permease compare
AO353_11340 +0.7 1.2 MarR family transcriptional regulator compare
AO353_17515 +0.6 2.4 short-chain dehydrogenase compare
AO353_00955 +0.6 1.4 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_00760 +0.6 1.0 hypothetical protein compare
AO353_03120 +0.6 2.0 hypothetical protein compare
AO353_23405 +0.6 1.0 hypothetical protein compare
AO353_24135 +0.6 1.6 hypothetical protein compare
AO353_00170 +0.6 1.4 lysozyme compare
AO353_27460 +0.6 1.3 hypothetical protein compare
AO353_20370 +0.6 1.4 MerR family transcriptional regulator compare
AO353_20680 +0.6 1.8 cell division protein compare
AO353_04480 +0.6 1.9 NGG1p interacting factor NIF3 compare
AO353_14465 +0.6 2.8 hypothetical protein compare
AO353_26225 +0.6 2.1 hypothetical protein compare
AO353_00125 +0.6 1.4 hypothetical protein compare
AO353_22605 +0.6 2.4 hypothetical protein compare
AO353_28200 +0.6 1.8 ribosomal protein S3AE compare
AO353_27845 +0.6 2.6 hemolysin D compare
AO353_25355 +0.6 1.3 hypothetical protein compare
AO353_24870 +0.6 1.7 hypothetical protein compare
AO353_25430 +0.6 2.0 ABC transporter permease compare
AO353_16305 +0.6 2.4 pilin assembly protein compare
AO353_04490 +0.6 3.5 murein transglycosylase compare
AO353_00755 +0.6 2.1 hypothetical protein compare
AO353_22700 +0.6 1.0 LexA family transcriptional regulator compare
AO353_19490 +0.6 1.7 Fis family transcriptional regulator compare
AO353_14590 +0.6 1.2 serine kinase/phosphatase compare
AO353_07445 +0.6 0.9 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_23125 +0.6 1.6 hypothetical protein compare
AO353_27275 +0.6 1.9 hypothetical protein compare
AO353_09015 +0.6 1.4 DNA-binding protein compare
AO353_02940 +0.6 1.3 DNA-binding protein compare
AO353_01000 +0.6 2.4 hypothetical protein compare
AO353_18790 +0.6 1.7 histidine kinase compare
AO353_09490 +0.6 1.7 hypothetical protein compare
AO353_03050 +0.6 2.7 ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) compare
AO353_18820 +0.6 3.4 cobalamin biosynthesis protein CobQ compare
AO353_17415 +0.6 3.0 hypothetical protein compare
AO353_28565 +0.6 1.3 hypothetical protein compare
AO353_03100 +0.6 0.9 XRE family transcriptional regulator compare
AO353_22915 +0.6 1.8 oxidoreductase compare
AO353_28750 +0.6 1.7 LysR family transcriptional regulator compare
AO353_23235 +0.6 1.9 NADP oxidoreductase compare
AO353_06275 +0.6 1.5 DNA polymerase III subunit epsilon compare
AO353_28320 +0.6 1.2 aminopeptidase compare
AO353_23155 +0.6 1.1 IclR family transcriptional regulator compare
AO353_18655 +0.6 1.7 flagellar assembly protein FliT compare
AO353_12020 +0.6 1.3 hypothetical protein compare
AO353_25495 +0.6 2.2 histidine kinase compare
AO353_25450 +0.6 0.7 cyanate hydratase compare
AO353_20695 +0.6 2.1 O-succinylhomoserine sulfhydrylase compare
AO353_00765 +0.6 3.4 D-alanyl-D-alanine carboxypeptidase compare
AO353_28225 +0.6 2.1 tartrate dehydrogenase compare
AO353_29280 +0.6 1.1 hypothetical protein compare
AO353_04965 +0.5 1.8 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
AO353_04325 +0.5 1.0 hypothetical protein compare
AO353_15825 +0.5 1.4 serine acetyltransferase compare
AO353_18215 +0.5 2.1 multidrug DMT transporter permease compare
AO353_27545 +0.5 2.1 hypothetical protein compare
AO353_18955 +0.5 2.1 acyl-CoA thioesterase compare
AO353_22665 +0.5 1.4 AsnC family transcriptional regulator compare
AO353_20315 +0.5 1.9 cytochrome B compare
AO353_05530 +0.5 1.9 hypothetical protein compare
AO353_26685 +0.5 2.0 cobalt efflux pump (from data) compare
AO353_09875 +0.5 0.8 hypothetical protein compare
AO353_11485 +0.5 1.6 hypothetical protein compare
AO353_03605 +0.5 0.5 FmdB family transcriptional regulator compare
AO353_03460 +0.5 2.1 3-methyladenine DNA glycosylase 2 compare
AO353_24915 +0.5 0.8 hypothetical protein compare
AO353_20810 +0.5 0.9 hypothetical protein compare
AO353_18285 +0.5 1.3 3-phosphoglycerate kinase compare
AO353_27000 +0.5 0.7 hypothetical protein compare
AO353_09060 +0.5 1.0 hypothetical protein compare
AO353_17640 +0.5 1.0 serine peptidase compare
AO353_03660 +0.5 1.6 hypothetical protein compare
AO353_21340 +0.5 2.7 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
AO353_22395 +0.5 1.5 pyrroloquinoline quinone biosynthesis protein PqqB compare
AO353_13015 +0.5 1.7 nitrate reductase compare
AO353_12710 +0.5 0.7 thioredoxin compare
AO353_19640 +0.5 2.0 chemotaxis protein CheY compare
AO353_03300 +0.5 1.1 hypothetical protein compare
AO353_07970 +0.5 2.3 aromatic ring-opening dioxygenase LigA compare
AO353_17100 +0.5 1.2 hypothetical protein compare
AO353_17870 +0.5 1.4 NADH dehydrogenase compare
AO353_18745 +0.5 0.8 flagellar biosynthesis protein flip compare
AO353_07145 +0.5 3.5 anhydro-N-acetylmuramic acid kinase compare
AO353_23350 +0.5 1.2 hypothetical protein compare
AO353_25680 +0.5 1.6 2-methylbutanoyl-CoA dehydrogenase / butanoyl-CoA dehydrogenase / isobutyryl-CoA dehydrogenase (EC 1.3.8.1; EC 1.3.8.5) (from data) compare
AO353_21020 +0.5 2.0 disulfide bond formation protein DsbA compare
AO353_13130 +0.5 1.4 N-acetylmuramoyl-L-alanine amidase compare
AO353_26405 +0.5 1.5 hypothetical protein compare
AO353_11530 +0.5 3.0 diguanylate cyclase compare
AO353_24595 +0.5 0.9 hypothetical protein compare
AO353_02275 +0.5 1.5 hypothetical protein compare
AO353_24875 +0.5 1.8 histidine kinase compare
AO353_24770 +0.5 2.1 FAD-dependent oxidoreductase compare
AO353_27250 +0.5 2.0 glycoside hydrolase family 19 compare
AO353_23730 +0.5 1.0 hypothetical protein compare
AO353_22585 +0.5 2.3 HxlR family transcriptional regulator compare
AO353_27280 +0.5 1.9 phage tail protein compare
AO353_16040 +0.5 0.9 hypothetical protein compare
AO353_16645 +0.5 1.4 hypothetical protein compare
AO353_29340 +0.5 1.0 transporter compare
AO353_26310 +0.5 1.3 hypothetical protein compare
AO353_24600 +0.5 1.1 hypothetical protein compare
AO353_10045 +0.5 1.8 hypothetical protein compare
AO353_08375 +0.5 2.0 hypothetical protein compare
AO353_12665 +0.5 1.0 glycosyl transferase compare
AO353_25665 +0.5 1.8 3-hydroxy-isobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) compare
AO353_00140 +0.5 1.4 phage tail protein compare
AO353_04475 +0.5 1.3 hypothetical protein compare
AO353_21275 +0.5 2.1 RNA polymerase subunit sigma compare
AO353_17175 +0.5 1.1 beta-ketoadipyl CoA thiolase compare
AO353_07815 +0.5 2.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in lb experiments