Experiment set2IT011 for Dyella japonica UNC79MFTsu3.2

Compare to:

a-Cyclodextrin carbon source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS12070 -8.0 -5.5 anthranilate phosphoribosyltransferase compare
ABZR86_RS15945 -7.1 -4.9 dihydroxy-acid dehydratase compare
ABZR86_RS09635 -7.1 -6.9 phosphoglycerate dehydrogenase compare
ABZR86_RS10215 -6.8 -6.6 inositol monophosphatase family protein compare
ABZR86_RS08710 -6.7 -7.9 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS15980 -6.6 -4.5 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS06705 -6.5 -4.5 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS10475 -6.5 -6.3 shikimate kinase compare
ABZR86_RS10425 -6.2 -4.3 pyrroline-5-carboxylate reductase compare
ABZR86_RS08340 -6.2 -4.3 adenylosuccinate synthase compare
ABZR86_RS15940 -6.1 -9.3 ketol-acid reductoisomerase compare
ABZR86_RS11570 -5.9 -11.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS02230 -5.8 -5.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS15960 -5.8 -10.4 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS02225 -5.8 -6.8 prephenate dehydratase compare
ABZR86_RS15935 -5.8 -13.9 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS18675 -5.7 -3.9 phosphoglycerate kinase compare
ABZR86_RS14985 -5.6 -11.4 shikimate dehydrogenase compare
ABZR86_RS14690 -5.5 -7.5 phosphogluconate dehydratase compare
ABZR86_RS15975 -5.4 -13.5 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS08730 -5.4 -10.8 N-acetylornithine carbamoyltransferase compare
ABZR86_RS15950 -5.4 -8.2 3-isopropylmalate dehydrogenase compare
ABZR86_RS19560 -5.4 -7.3 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS08250 -5.3 -3.7 phosphate signaling complex protein PhoU compare
ABZR86_RS07995 -5.3 -7.3 tryptophan synthase subunit alpha compare
ABZR86_RS10715 -5.2 -15.1 serine hydroxymethyltransferase compare
ABZR86_RS02220 -5.2 -18.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS08000 -5.1 -15.4 tryptophan synthase subunit beta compare
ABZR86_RS15955 -5.1 -7.8 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS12180 -5.1 -17.5 anthranilate synthase component I compare
ABZR86_RS11555 -5.1 -15.3 phosphoenolpyruvate carboxylase compare
ABZR86_RS06700 -5.1 -8.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS14100 -5.1 -7.7 DNA adenine methylase compare
ABZR86_RS06710 -5.0 -8.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS02815 -5.0 -17.6 asparagine synthase B compare
ABZR86_RS08685 -5.0 -7.6 glutamate 5-kinase compare
ABZR86_RS13515 -5.0 -6.8 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS08700 -5.0 -6.8 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS16800 -5.0 -16.6 FAD-dependent oxidoreductase compare
ABZR86_RS21020 -4.9 -11.1 ATP-binding protein compare
ABZR86_RS15965 -4.8 -11.4 branched-chain amino acid transaminase compare
ABZR86_RS15970 -4.8 -11.4 2-isopropylmalate synthase compare
ABZR86_RS08715 -4.8 -14.2 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS16795 -4.7 -22.0 glutamate synthase large subunit compare
ABZR86_RS06715 -4.6 -10.2 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS13055 -4.6 -11.6 glucokinase compare
ABZR86_RS08040 -4.6 -8.2 chorismate synthase compare
ABZR86_RS05885 -4.6 -12.1 LysR substrate-binding domain-containing protein compare
ABZR86_RS06730 -4.6 -9.7 histidinol dehydrogenase compare
ABZR86_RS06000 -4.6 -8.1 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS08680 -4.5 -11.2 glutamate-5-semialdehyde dehydrogenase compare
ABZR86_RS19860 -4.5 -12.9 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS19030 -4.5 -6.8 cystathionine gamma-synthase compare
ABZR86_RS08010 -4.5 -8.0 phosphoribosylanthranilate isomerase compare
ABZR86_RS06725 -4.5 -9.0 histidinol-phosphate transaminase compare
ABZR86_RS06775 -4.5 -18.5 amidophosphoribosyltransferase compare
ABZR86_RS05875 -4.5 -7.1 cysteine synthase A compare
ABZR86_RS08705 -4.4 -11.0 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS12215 -4.4 -3.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS14700 -4.3 -5.9 glucose-6-phosphate dehydrogenase compare
ABZR86_RS05905 -4.3 -8.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS05995 -4.2 -19.0 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS05900 -4.1 -12.6 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS12065 -4.1 -6.9 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS05895 -4.1 -14.9 phosphoadenylyl-sulfate reductase compare
ABZR86_RS08905 -4.1 -12.6 carbonate dehydratase compare
ABZR86_RS08695 -4.0 -12.5 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS21575 -4.0 -11.3 [protein-PII] uridylyltransferase compare
ABZR86_RS15315 -4.0 -11.4 phenylalanine 4-monooxygenase compare
ABZR86_RS06260 -3.9 -6.5 MBL fold metallo-hydrolase compare
ABZR86_RS06735 -3.9 -6.9 ATP phosphoribosyltransferase compare
ABZR86_RS15460 -3.9 -2.7 type I glutamate--ammonia ligase compare
ABZR86_RS19800 -3.8 -12.5 RNase adapter RapZ compare
ABZR86_RS02890 -3.8 -8.8 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS16045 -3.8 -9.2 N-acetylglucosamine-6-phosphate deacetylase compare
ABZR86_RS18615 -3.7 -2.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS06720 -3.6 -6.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS02895 -3.6 -10.2 ABC transporter ATP-binding protein compare
ABZR86_RS17005 -3.6 -17.4 MFS transporter conserved
ABZR86_RS18655 -3.6 -8.3 transketolase compare
ABZR86_RS13850 -3.5 -7.0 phosphoribosylamine--glycine ligase compare
ABZR86_RS07590 -3.5 -18.0 methionine synthase compare
ABZR86_RS09885 -3.5 -2.4 trypsin-like peptidase domain-containing protein compare
ABZR86_RS15985 -3.5 -9.9 homoserine dehydrogenase compare
ABZR86_RS16985 -3.4 -12.2 Alpha-amylase (EC 3.2.1.1) (from data) conserved
ABZR86_RS12435 -3.4 -12.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS07585 -3.4 -11.7 homocysteine S-methyltransferase family protein compare
ABZR86_RS19025 -3.4 -5.2 homoserine O-succinyltransferase compare
ABZR86_RS05890 -3.4 -15.0 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS02880 -3.4 -10.7 sulfate ABC transporter substrate-binding protein compare
ABZR86_RS17085 -3.3 -5.1 type II 3-dehydroquinate dehydratase compare
ABZR86_RS11825 -3.3 -2.3 citrate synthase compare
ABZR86_RS02885 -3.3 -11.1 sulfate ABC transporter permease subunit CysT compare
ABZR86_RS18355 -3.3 -2.3 PepSY domain-containing protein compare
ABZR86_RS17010 -3.3 -9.5 LacI family DNA-binding transcriptional regulator conserved
ABZR86_RS20775 -3.2 -6.3 TetR/AcrR family transcriptional regulator compare
ABZR86_RS19865 -3.2 -3.0 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS18815 -3.2 -5.6 FAD-binding protein compare
ABZR86_RS00830 -3.2 -11.9 glucose-6-phosphate isomerase compare
ABZR86_RS20980 -3.1 -4.6 hypothetical protein compare
ABZR86_RS06630 -3.1 -3.1 phosphopyruvate hydratase compare
ABZR86_RS16980 -3.0 -15.6 TonB-dependent receptor compare
ABZR86_RS10205 -3.0 -7.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS10480 -3.0 -3.0 3-dehydroquinate synthase compare
ABZR86_RS12885 -3.0 -2.0 magnesium-translocating P-type ATPase compare
ABZR86_RS18875 -2.9 -8.5 glycine cleavage system aminomethyltransferase GcvT compare
ABZR86_RS12780 -2.9 -4.6 pteridine reductase compare
ABZR86_RS19235 -2.9 -3.8 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS12200 -2.9 -7.6 ribulose-phosphate 3-epimerase compare
ABZR86_RS18780 -2.7 -3.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS12005 -2.7 -1.8 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS12790 -2.7 -3.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
ABZR86_RS05820 -2.7 -6.0 GntR family transcriptional regulator compare
ABZR86_RS06030 -2.7 -1.8 transcription termination factor NusA compare
ABZR86_RS15515 -2.6 -7.5 nitrogen regulation protein NR(I) compare
ABZR86_RS18960 -2.6 -8.4 TetR/AcrR family transcriptional regulator compare
ABZR86_RS18775 -2.6 -2.9 nucleotidyltransferase family protein compare
ABZR86_RS15640 -2.5 -1.7 orotate phosphoribosyltransferase compare
ABZR86_RS05550 -2.5 -4.3 lipopolysaccharide assembly protein LapB compare
ABZR86_RS08945 -2.5 -12.5 C40 family peptidase compare
ABZR86_RS07180 -2.4 -6.1 RNA polymerase sigma factor RpoE compare
ABZR86_RS11870 -2.4 -13.0 phospholipid-binding protein MlaC compare
ABZR86_RS10840 -2.4 -3.3 Holliday junction branch migration protein RuvA compare
ABZR86_RS08305 -2.3 -14.5 aminomethyl-transferring glycine dehydrogenase compare
ABZR86_RS06740 -2.3 -2.5 YerC/YecD family TrpR-related protein compare
ABZR86_RS05880 -2.2 -7.1 siroheme synthase CysG compare
ABZR86_RS21480 -2.2 -8.3 arginase family protein compare
ABZR86_RS11995 -2.2 -8.9 5-formyltetrahydrofolate cyclo-ligase compare
ABZR86_RS11845 -2.2 -11.2 RidA family protein compare
ABZR86_RS06590 -2.2 -3.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS08150 -2.2 -2.3 DeoR/GlpR family DNA-binding transcription regulator compare
ABZR86_RS18880 -2.2 -6.8 glycine cleavage system protein GcvH compare
ABZR86_RS06355 -2.1 -4.5 folate-binding protein YgfZ compare
ABZR86_RS11860 -2.1 -11.9 VacJ family lipoprotein compare
ABZR86_RS09935 -2.1 -2.1 DUF4105 domain-containing protein compare
ABZR86_RS09075 -2.0 -1.6 NrsF family protein compare
ABZR86_RS06400 -1.9 -6.0 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR86_RS15330 -1.9 -9.7 TetR/AcrR family transcriptional regulator compare
ABZR86_RS21435 -1.9 -5.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABZR86_RS11485 -1.8 -4.1 hypothetical protein compare
ABZR86_RS07340 -1.8 -2.5 tRNA-Leu compare
ABZR86_RS13880 -1.8 -2.3 peptide deformylase compare
ABZR86_RS07885 -1.8 -5.3 cation diffusion facilitator family transporter compare
ABZR86_RS18765 -1.7 -3.2 dehydrogenase compare
ABZR86_RS18450 -1.7 -2.5 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS19795 -1.7 -5.1 PTS sugar transporter subunit IIA compare
ABZR86_RS02185 -1.7 -8.4 tRNA 2-thiouridine(34) synthase MnmA compare
ABZR86_RS06940 -1.7 -8.1 hypothetical protein compare
ABZR86_RS12410 -1.7 -2.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS15925 -1.7 -9.1 threonine ammonia-lyase, biosynthetic compare
ABZR86_RS18830 -1.6 -5.9 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS00570 -1.6 -3.9 acetoacetyl-CoA reductase compare
ABZR86_RS19225 -1.6 -3.7 site-specific tyrosine recombinase XerD compare
ABZR86_RS14705 -1.6 -6.1 GntR family transcriptional regulator compare
ABZR86_RS12595 -1.6 -1.5 cell division ATP-binding protein FtsE compare
ABZR86_RS11875 -1.6 -7.6 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR86_RS18770 -1.6 -4.4 SIS domain-containing protein compare
ABZR86_RS09630 -1.5 -7.8 FAD-binding oxidoreductase compare
ABZR86_RS21725 -1.5 -9.2 YhdP family protein compare
ABZR86_RS12605 -1.5 -2.9 thioredoxin TrxA compare
ABZR86_RS02450 -1.5 -2.7 hypothetical protein compare
ABZR86_RS11885 -1.5 -4.2 ATP-binding cassette domain-containing protein compare
ABZR86_RS09660 -1.5 -3.5 MerR family transcriptional regulator compare
ABZR86_RS18465 -1.5 -7.6 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR86_RS17230 -1.4 -11.7 phosphomethylpyrimidine synthase ThiC compare
ABZR86_RS21075 -1.4 -1.6 SDR family oxidoreductase compare
ABZR86_RS15305 -1.4 -4.1 MbcA/ParS/Xre antitoxin family protein compare
ABZR86_RS17180 -1.4 -7.9 glycosyltransferase compare
ABZR86_RS09845 -1.4 -8.4 DUF1631 domain-containing protein compare
ABZR86_RS09505 -1.4 -7.3 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR86_RS12280 -1.4 -1.7 dihydrolipoyl dehydrogenase compare
ABZR86_RS18640 -1.3 -6.0 class I fructose-bisphosphate aldolase compare
ABZR86_RS18725 -1.3 -3.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR86_RS17150 -1.3 -7.5 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
ABZR86_RS10830 -1.3 -2.4 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS11880 -1.3 -4.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR86_RS10945 -1.3 -5.6 trehalose-phosphatase compare
ABZR86_RS09430 -1.3 -4.4 non-heme iron oxygenase ferredoxin subunit compare
ABZR86_RS07810 -1.3 -4.7 ATP-binding protein compare
ABZR86_RS04835 -1.3 -4.0 hypothetical protein compare
ABZR86_RS02305 -1.3 -0.8 hypothetical protein compare
ABZR86_RS19905 -1.3 -3.8 DUF47 domain-containing protein compare
ABZR86_RS07660 -1.3 -4.1 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS19805 -1.2 -4.4 HPr(Ser) kinase/phosphatase compare
ABZR86_RS05635 -1.2 -6.6 sodium:calcium antiporter compare
ABZR86_RS13355 -1.2 -8.9 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS02545 -1.2 -2.9 Ref family recombination enhancement nuclease compare
ABZR86_RS09265 -1.2 -8.4 hypothetical protein compare
ABZR86_RS08130 -1.2 -6.2 dCTP deaminase compare
ABZR86_RS21280 -1.2 -4.4 hypothetical protein compare
ABZR86_RS05700 -1.2 -3.0 SsrA-binding protein SmpB compare
ABZR86_RS15990 -1.2 -2.4 hypothetical protein compare
ABZR86_RS06690 -1.2 -3.2 acireductone synthase compare
ABZR86_RS18720 -1.2 -2.7 dTDP-4-dehydrorhamnose reductase compare
ABZR86_RS18730 -1.1 -5.4 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR86_RS18480 -1.1 -9.8 homogentisate 1,2-dioxygenase compare
ABZR86_RS19910 -1.1 -2.8 inorganic phosphate transporter compare
ABZR86_RS21450 -1.1 -2.1 GspH/FimT family pseudopilin compare
ABZR86_RS02720 -1.1 -2.9 ribonuclease E compare
ABZR86_RS05690 -1.1 -1.3 RnfH family protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source a-Cyclodextrin in Dyella japonica UNC79MFTsu3.2

For carbon source a-Cyclodextrin across organisms