Experiment set2IT011 for Bifidobacterium breve UCC2003
CDM1 without Lysine
Group: nutrient dropoutMedia: CDM1 + no Lysine, pH=7
Culturing: Bifido_ML2, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Anthony Shiver on 12/9/2019
Growth plate: CDM1_nutrientdrop A11
Specific Phenotypes
For 3 genes in this experiment
For nutrient dropout no Lysine in Bifidobacterium breve UCC2003
For nutrient dropout no Lysine across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Heat shock dnaK gene cluster extended | 1 |
| Protein chaperones | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-lysine biosynthesis VI | 7 | 6 | 1 |
| L-lysine biosynthesis III | 7 | 6 | 1 |
| L-lysine biosynthesis I | 9 | 9 | 1 |
| L-lysine biosynthesis II | 9 | 6 | 1 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis II | 15 | 13 | 1 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis I | 18 | 16 | 1 |
| aspartate superpathway | 25 | 23 | 1 |