Experiment set2IT010 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Cisplatin 0.006 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_01220 -3.8 -2.5 hypothetical protein compare
AO353_15490 -3.8 -2.2 hypothetical protein compare
AO353_07850 -3.7 -2.5 ATP-dependent RNA helicase compare
AO353_09720 -3.4 -2.0 hypothetical protein compare
AO353_13980 -3.3 -2.3 DNA repair protein RadA compare
AO353_12580 -3.2 -2.5 type II secretory protein PulK compare
AO353_21905 -3.2 -4.1 hypothetical protein compare
AO353_14220 -3.2 -2.1 ribosomal large subunit pseudouridine synthase D compare
AO353_09345 -3.1 -2.1 hypothetical protein compare
AO353_27665 -3.0 -5.6 arginyl-tRNA-protein transferase compare
AO353_00105 -2.9 -1.9 hypothetical protein compare
AO353_20545 -2.9 -9.7 excinuclease ABC subunit B conserved
AO353_22150 -2.9 -2.6 iron transporter compare
AO353_00495 -2.8 -1.9 DNA topoisomerase I compare
AO353_16810 -2.8 -1.9 recombinase RecX compare
AO353_06855 -2.8 -11.1 ABC-ATPase UvrA conserved
AO353_26050 -2.8 -2.6 hypothetical protein compare
AO353_23220 -2.8 -1.8 hypothetical protein compare
AO353_11340 -2.7 -1.8 MarR family transcriptional regulator compare
AO353_18780 -2.7 -2.6 cobyrinic acid a,c-diamide synthase compare
AO353_06710 -2.7 -2.4 riboflavin synthase subunit alpha compare
AO353_02085 -2.6 -4.6 methylthioribose-1-phosphate isomerase compare
AO353_16495 -2.6 -2.5 zinc metallopeptidase RseP compare
AO353_00435 -2.6 -11.5 transcription-repair coupling factor conserved
AO353_04320 -2.6 -1.8 single-stranded-DNA-specific exonuclease RecJ compare
AO353_04365 -2.6 -2.5 recombinase XerD compare
AO353_05625 -2.6 -2.3 transcription elongation factor GreA compare
AO353_27650 -2.6 -4.3 cell division protein FtsK compare
AO353_17020 -2.6 -3.9 ATP-dependent DNA helicase DinG conserved
AO353_00185 -2.5 -2.8 phage tail protein compare
AO353_09915 -2.5 -6.0 long-chain acyl-CoA thioester hydrolase compare
AO353_02515 -2.5 -5.2 recombination-associated protein RdgC compare
AO353_18505 -2.5 -1.2 translation initiation factor 2 compare
AO353_03715 -2.5 -2.3 H-NS histone compare
AO353_06850 -2.5 -1.7 MFS transporter compare
AO353_06455 -2.5 -1.7 D-alanyl-D-alanine carboxypeptidase compare
AO353_12650 -2.4 -1.1 hypothetical protein compare
AO353_23285 -2.4 -3.2 hypothetical protein compare
AO353_09050 -2.3 -1.6 recombinase XerC compare
AO353_05660 -2.3 -7.1 DNA repair protein RecN conserved
AO353_07155 -2.3 -5.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_21835 -2.3 -2.7 excinuclease ABC subunit C compare
AO353_20925 -2.3 -3.7 hypothetical protein compare
AO353_15170 -2.3 -3.2 cytochrome D ubiquinol oxidase subunit III compare
AO353_09860 -2.2 -9.4 histidine kinase compare
AO353_27720 -2.2 -4.7 cupin compare
AO353_01685 -2.2 -1.9 hypothetical protein compare
AO353_24750 -2.2 -7.0 DNA damage response nuclease (from data) conserved
AO353_08350 -2.2 -4.6 hypothetical protein compare
AO353_27675 -2.2 -7.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_12105 -2.2 -4.2 peptidase S41 compare
AO353_08600 -2.2 -3.5 TetR family transcriptional regulator compare
AO353_22645 -2.2 -3.0 hypothetical protein compare
AO353_02390 -2.2 -8.1 aminopeptidase conserved
AO353_16980 -2.2 -2.1 isochorismatase compare
AO353_19750 -2.2 -1.8 diaminopimelate epimerase compare
AO353_08980 -2.2 -2.5 heme biosynthesis operon protein HemX compare
AO353_20185 -2.2 -6.3 DNA-binding protein compare
AO353_13160 -2.1 -2.0 membrane protease HflC compare
AO353_22025 -2.1 -2.3 iron-sulfur cluster repair di-iron protein compare
AO353_21830 -2.1 -11.0 chemotaxis protein CheY compare
AO353_09320 -2.1 -6.2 ATP-dependent DNA helicase RecG compare
AO353_06540 -2.1 -2.6 hypothetical protein compare
AO353_10055 -2.1 -7.2 DNA helicase II compare
AO353_11920 -2.1 -2.3 hypothetical protein compare
AO353_02775 -2.0 -4.6 3-methyladenine DNA glycosylase compare
AO353_14885 -2.0 -5.2 glutamine ABC transporter ATP-binding protein compare
AO353_20800 -2.0 -0.9 hypothetical protein compare
AO353_03590 -2.0 -2.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_16915 -2.0 -7.8 hypothetical protein compare
AO353_23710 -2.0 -5.2 protein BatD compare
AO353_18425 -2.0 -3.9 hypothetical protein compare
AO353_27680 -2.0 -4.4 ATP-dependent Clp protease adaptor ClpS compare
AO353_19060 -2.0 -2.6 CysB family transcriptional regulator compare
AO353_11730 -2.0 -5.1 glutamate--cysteine ligase compare
AO353_04500 -2.0 -1.3 DNA repair protein RecO compare
AO353_12790 -2.0 -1.3 hypothetical protein compare
AO353_05550 -2.0 -5.8 pseudouridine synthase compare
AO353_18540 -1.9 -1.3 pseudouridine synthase compare
AO353_09890 -1.9 -3.1 phosphate ABC transporter ATP-binding protein compare
AO353_17250 -1.9 -2.9 nitrile hydratase compare
AO353_16710 -1.9 -1.8 hypothetical protein compare
AO353_14775 -1.9 -5.4 hypothetical protein compare
AO353_10930 -1.9 -6.0 DNA polymerase I compare
AO353_08470 -1.9 -3.9 RNA pyrophosphohydrolase compare
AO353_01410 -1.9 -2.1 ribonuclease E compare
AO353_01405 -1.9 -6.2 23S rRNA pseudouridylate synthase compare
AO353_02440 -1.9 -8.3 peptidase S41 compare
AO353_09905 -1.8 -7.2 phosphate-binding protein compare
AO353_20175 -1.8 -2.4 ATP-dependent Clp protease proteolytic subunit compare
AO353_13155 -1.8 -1.3 hypothetical protein compare
AO353_16430 -1.8 -6.6 cysteine sulfinate desulfinase compare
AO353_18430 -1.8 -7.3 ATP-dependent DNA helicase RecQ conserved
AO353_10480 -1.8 -7.0 recombinase RecF conserved
AO353_28965 -1.8 -3.2 hypothetical protein compare
AO353_28015 -1.8 -1.7 hypothetical protein compare
AO353_10950 -1.8 -7.5 thiol:disulfide interchange protein compare
AO353_26870 -1.8 -2.7 AP endonuclease compare
AO353_06425 -1.8 -3.2 lipoyl synthase compare
AO353_08265 -1.8 -4.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_14150 -1.7 -2.1 peptidylprolyl isomerase compare
AO353_24740 -1.7 -2.4 hypothetical protein compare
AO353_09900 -1.7 -8.9 phosphate ABC transporter permease compare
AO353_27725 -1.7 -2.7 GNAT family acetyltransferase compare
AO353_29350 -1.7 -9.6 DNA polymerase II conserved
AO353_23720 -1.7 -3.5 BatB protein compare
AO353_20390 -1.7 -3.2 rhodanese compare
AO353_05205 -1.7 -9.9 peptidase PmbA conserved
AO353_23950 -1.7 -2.7 hypothetical protein compare
AO353_00675 -1.7 -4.8 recombination protein RecR compare
AO353_03615 -1.7 -1.9 cold-shock protein compare
AO353_00825 -1.7 -3.2 porin compare
AO353_24755 -1.7 -6.8 ATP-dependent DNA helicase conserved
AO353_03580 -1.7 -1.1 ATP-dependent DNA helicase RuvB compare
AO353_06780 -1.7 -10.5 DNA repair helicase Lhr (from data) conserved
AO353_06040 -1.6 -1.6 exodeoxyribonuclease V subunit alpha compare
AO353_26400 -1.6 -2.9 hypothetical protein compare
AO353_16195 -1.6 -1.5 DNA mismatch repair protein MutT compare
AO353_09240 -1.6 -1.5 acetylglutamate kinase compare
AO353_14970 -1.6 -3.2 hypothetical protein compare
AO353_11720 -1.6 -2.5 taurine transporter ATP-binding subunit compare
AO353_14585 -1.6 -4.7 ribosomal-protein-alanine acetyltransferase compare
AO353_23730 -1.6 -2.2 hypothetical protein compare
AO353_26070 -1.6 -2.8 hypothetical protein compare
AO353_15260 -1.6 -4.8 stringent starvation protein A compare
AO353_17625 -1.6 -6.5 RNA polymerase subunit sigma compare
AO353_17915 -1.6 -4.5 hypothetical protein compare
AO353_15290 -1.6 -7.0 methyltransferase compare
AO353_26055 -1.6 -2.1 hypothetical protein compare
AO353_10430 -1.6 -2.7 chromosome partitioning protein ParB compare
AO353_15410 -1.6 -1.0 hypothetical protein compare
AO353_04565 -1.5 -3.6 nucleoid-associated protein compare
AO353_13610 -1.5 -3.7 precorrin isomerase compare
AO353_21935 -1.5 -1.9 nitrite reductase compare
AO353_27695 -1.5 -5.7 isocitrate dehydrogenase compare
AO353_18520 -1.5 -5.6 phosphoesterase compare
AO353_04940 -1.5 -5.3 hypothetical protein compare
AO353_02560 -1.5 -7.3 recombinase RmuC compare
AO353_02710 -1.5 -8.2 (p)ppGpp synthetase compare
AO353_08165 -1.5 -2.1 pyrroline-5-carboxylate reductase compare
AO353_06045 -1.5 -4.2 exodeoxyribonuclease V subunit beta compare
AO353_04340 -1.5 -1.9 hypothetical protein compare
AO353_12060 -1.5 -3.8 acetyltransferase compare
AO353_02465 -1.5 -1.7 hypothetical protein compare
AO353_04190 -1.5 -1.6 glycerol-3-phosphate dehydrogenase compare
AO353_12455 -1.5 -2.3 nuclease compare
AO353_05215 -1.5 -7.6 protease TldD conserved
AO353_26630 -1.5 -3.8 ArsR family transcriptional regulator compare
AO353_00720 -1.5 -5.3 chromosome segregation protein SMC compare
AO353_01215 -1.5 -6.3 hypothetical protein compare
AO353_08560 -1.5 -5.4 spermidine/putrescine ABC transporter permease conserved
AO353_14485 -1.5 -0.9 pseudouridine synthase compare
AO353_24745 -1.5 -2.3 hypothetical protein compare
AO353_02250 -1.5 -2.7 chorismate synthase compare
AO353_22035 -1.5 -3.2 pyridoxine 5'-phosphate oxidase compare
AO353_18335 -1.5 -2.7 hypothetical protein compare
AO353_02220 -1.4 -1.1 hypothetical protein compare
AO353_04810 -1.4 -1.4 hypothetical protein compare
AO353_07325 -1.4 -1.0 diadenosine tetraphosphatase compare
AO353_01355 -1.4 -4.9 3-oxoacyl-ACP synthase compare
AO353_16420 -1.4 -4.4 thiamine biosynthesis protein ThiF compare
AO353_13840 -1.4 -3.3 histidine kinase compare
AO353_15725 -1.4 -3.0 hypothetical protein compare
AO353_03290 -1.4 -1.4 peptide deformylase compare
AO353_09895 -1.4 -5.9 phosphate ABC transporter permease compare
AO353_09000 -1.4 -2.7 argininosuccinate lyase compare
AO353_10630 -1.4 -4.0 16S rRNA methyltransferase compare
AO353_14030 -1.4 -7.8 ABC transporter ATP-binding protein compare
AO353_23385 -1.4 -5.0 trans-2-enoyl-CoA reductase compare
AO353_15590 -1.4 -3.4 hypothetical protein compare
AO353_09315 -1.4 -5.5 LysR family transcriptional regulator compare
AO353_19145 -1.4 -2.8 protease HtpX compare
AO353_00470 -1.4 -4.7 CDP-glycerol--UDP-pyrophosphoryl-N- acetylglucosaminyl-N-acetylmannosamine glycerophosphotransferase compare
AO353_08645 -1.4 -2.8 transporter compare
AO353_07315 -1.4 -2.0 rRNA methyltransferase compare
AO353_19235 -1.4 -5.3 DNA damage response gene with a putative DNA binding domain (PA0922-like) (from data) conserved
AO353_25615 -1.4 -3.4 2-methylcitrate dehydratase compare
AO353_07355 -1.4 -2.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_28680 -1.4 -2.8 transposase compare
AO353_09490 -1.3 -2.3 hypothetical protein compare
AO353_18370 -1.3 -4.3 GntR family transcriptional regulator compare
AO353_12390 -1.3 -1.9 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_08885 -1.3 -8.7 polyphosphate kinase compare
AO353_00905 -1.3 -3.0 GntR family transcriptional regulator compare
AO353_20265 -1.3 -2.2 spore coat protein compare
AO353_16835 -1.3 -1.5 LuxR family transcriptional regulator compare
AO353_14395 -1.3 -2.8 poly(A) polymerase compare
AO353_21615 -1.3 -6.9 methionine synthase compare
AO353_26195 -1.3 -1.6 hypothetical protein compare
AO353_24830 -1.3 -1.7 enoyl-CoA hydratase compare
AO353_02570 -1.3 -2.6 hypothetical protein compare
AO353_19770 -1.3 -2.0 peptidase compare
AO353_27110 -1.3 -4.4 hypothetical protein compare
AO353_01915 -1.3 -1.2 GlcG protein compare
AO353_23370 -1.3 -3.6 cytochrome C compare
AO353_26320 -1.3 -3.4 hypothetical protein compare
AO353_27005 -1.3 -4.3 proline hydroxylase compare
AO353_21945 -1.3 -2.0 protein nirL compare
AO353_24260 -1.3 -1.3 hypothetical protein compare
AO353_11915 -1.3 -4.9 agmatine deiminase compare


Specific Phenotypes

For 29 genes in this experiment

For stress Cisplatin in Pseudomonas fluorescens FW300-N2E3

For stress Cisplatin across organisms