Experiment set2IT010 for Dyella japonica UNC79MFTsu3.2

Compare to:

D-Galactose carbon source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS09635 -8.0 -5.5 phosphoglycerate dehydrogenase compare
ABZR86_RS11105 -7.4 -5.1 Fructokinase (EC 2.7.1.4) (from data) compare
ABZR86_RS02230 -7.1 -4.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS06720 -6.9 -4.8 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS12070 -6.7 -7.9 anthranilate phosphoribosyltransferase compare
ABZR86_RS10215 -6.6 -6.4 inositol monophosphatase family protein compare
ABZR86_RS08010 -6.3 -6.2 phosphoribosylanthranilate isomerase compare
ABZR86_RS20980 -6.3 -4.3 hypothetical protein compare
ABZR86_RS10425 -6.2 -4.3 pyrroline-5-carboxylate reductase compare
ABZR86_RS07585 -6.2 -10.3 homocysteine S-methyltransferase family protein compare
ABZR86_RS11840 -6.1 -8.4 ATP-dependent DNA helicase RecG compare
ABZR86_RS01220 -6.0 -5.8 2-dehydro-3-deoxy-6-phosphogalactonate aldolase conserved
ABZR86_RS06710 -6.0 -7.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS15945 -6.0 -5.8 dihydroxy-acid dehydratase compare
ABZR86_RS21020 -5.9 -11.9 ATP-binding protein compare
ABZR86_RS14985 -5.9 -10.6 shikimate dehydrogenase compare
ABZR86_RS09750 -5.9 -20.4 excinuclease ABC subunit UvrB compare
ABZR86_RS02225 -5.8 -6.9 prephenate dehydratase compare
ABZR86_RS15935 -5.8 -13.5 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS02220 -5.8 -16.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS06705 -5.8 -5.6 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS10475 -5.7 -7.8 shikimate kinase compare
ABZR86_RS10715 -5.7 -14.2 serine hydroxymethyltransferase compare
ABZR86_RS08695 -5.7 -10.2 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS14100 -5.6 -3.9 DNA adenine methylase compare
ABZR86_RS19025 -5.6 -3.9 homoserine O-succinyltransferase compare
ABZR86_RS06000 -5.6 -6.6 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS11570 -5.6 -9.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS02450 -5.4 -6.4 hypothetical protein compare
ABZR86_RS01210 -5.4 -7.3 SDR family oxidoreductase conserved
ABZR86_RS08685 -5.3 -8.1 glutamate 5-kinase compare
ABZR86_RS08710 -5.3 -10.8 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS08730 -5.3 -10.2 N-acetylornithine carbamoyltransferase compare
ABZR86_RS07590 -5.3 -17.2 methionine synthase compare
ABZR86_RS08250 -5.3 -3.6 phosphate signaling complex protein PhoU compare
ABZR86_RS06715 -5.3 -8.0 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS06700 -5.3 -8.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS18675 -5.2 -5.1 phosphoglycerate kinase compare
ABZR86_RS08705 -5.2 -11.0 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS02245 -5.2 -15.9 excinuclease ABC subunit UvrC compare
ABZR86_RS08715 -5.2 -14.0 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS00660 -5.2 -5.0 recombinase RecA compare
ABZR86_RS00910 -5.2 -22.4 excinuclease ABC subunit UvrA compare
ABZR86_RS12065 -5.1 -7.8 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS08000 -5.1 -15.5 tryptophan synthase subunit beta compare
ABZR86_RS05665 -5.1 -10.4 DNA repair protein RecN compare
ABZR86_RS16795 -5.1 -22.3 glutamate synthase large subunit compare
ABZR86_RS08040 -5.1 -6.1 chorismate synthase compare
ABZR86_RS18640 -5.1 -9.2 class I fructose-bisphosphate aldolase compare
ABZR86_RS08700 -5.1 -6.1 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS19785 -5.1 -16.2 phosphoenolpyruvate--protein phosphotransferase compare
ABZR86_RS01215 -5.1 -9.3 galactonate dehydratase conserved
ABZR86_RS02815 -5.0 -18.8 asparagine synthase B compare
ABZR86_RS15975 -5.0 -14.1 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS07015 -5.0 -8.9 AraC family transcriptional regulator compare
ABZR86_RS05995 -4.9 -18.3 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS01225 -4.9 -5.7 2-dehydro-3-deoxygalactonokinase dgoK (EC 2.7.1.58) (from data) conserved
ABZR86_RS15940 -4.9 -10.7 ketol-acid reductoisomerase compare
ABZR86_RS06725 -4.8 -9.2 histidinol-phosphate transaminase compare
ABZR86_RS15950 -4.8 -8.2 3-isopropylmalate dehydrogenase compare
ABZR86_RS06735 -4.8 -5.7 ATP phosphoribosyltransferase compare
ABZR86_RS05635 -4.8 -11.9 sodium:calcium antiporter compare
ABZR86_RS11655 -4.8 -6.5 SLC13 family permease compare
ABZR86_RS16965 -4.8 -14.0 DNA helicase II compare
ABZR86_RS05875 -4.8 -6.5 cysteine synthase A compare
ABZR86_RS08340 -4.8 -6.5 adenylosuccinate synthase compare
ABZR86_RS00685 -4.8 -2.0 carbon storage regulator CsrA compare
ABZR86_RS15965 -4.7 -10.2 branched-chain amino acid transaminase compare
ABZR86_RS14700 -4.7 -4.6 glucose-6-phosphate dehydrogenase compare
ABZR86_RS06730 -4.7 -9.4 histidinol dehydrogenase compare
ABZR86_RS10830 -4.7 -3.2 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS16800 -4.7 -15.9 FAD-dependent oxidoreductase compare
ABZR86_RS00830 -4.6 -10.3 glucose-6-phosphate isomerase compare
ABZR86_RS08905 -4.5 -12.0 carbonate dehydratase compare
ABZR86_RS05820 -4.5 -6.1 GntR family transcriptional regulator compare
ABZR86_RS05885 -4.5 -11.8 LysR substrate-binding domain-containing protein compare
ABZR86_RS06260 -4.5 -6.0 MBL fold metallo-hydrolase compare
ABZR86_RS16810 -4.4 -10.7 methylglyoxal synthase compare
ABZR86_RS21575 -4.4 -10.6 [protein-PII] uridylyltransferase compare
ABZR86_RS19030 -4.4 -6.2 cystathionine gamma-synthase compare
ABZR86_RS00570 -4.4 -5.9 acetoacetyl-CoA reductase compare
ABZR86_RS14690 -4.3 -8.7 phosphogluconate dehydratase compare
ABZR86_RS12780 -4.3 -6.2 pteridine reductase compare
ABZR86_RS10840 -4.3 -2.9 Holliday junction branch migration protein RuvA compare
ABZR86_RS12605 -4.3 -2.9 thioredoxin TrxA compare
ABZR86_RS15960 -4.3 -9.9 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS15025 -4.2 -5.0 tyrosine recombinase XerC compare
ABZR86_RS08305 -4.2 -16.9 aminomethyl-transferring glycine dehydrogenase compare
ABZR86_RS01205 -4.2 -12.0 D-galactanolactonase (from data) conserved
ABZR86_RS11555 -4.1 -13.4 phosphoenolpyruvate carboxylase compare
ABZR86_RS15970 -4.1 -9.4 2-isopropylmalate synthase compare
ABZR86_RS16610 -4.1 -7.3 hypothetical protein compare
ABZR86_RS05900 -4.1 -12.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS11860 -4.1 -14.5 VacJ family lipoprotein compare
ABZR86_RS06275 -4.0 -3.8 DUF6165 family protein compare
ABZR86_RS19225 -4.0 -4.7 site-specific tyrosine recombinase XerD compare
ABZR86_RS18655 -3.9 -7.0 transketolase compare
ABZR86_RS07215 -3.9 -2.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
ABZR86_RS05895 -3.9 -15.1 phosphoadenylyl-sulfate reductase compare
ABZR86_RS11845 -3.9 -14.2 RidA family protein compare
ABZR86_RS07320 -3.9 -19.0 endopeptidase La compare
ABZR86_RS18875 -3.9 -7.2 glycine cleavage system aminomethyltransferase GcvT compare
ABZR86_RS07020 -3.9 -9.3 NAD(P)-dependent alcohol dehydrogenase compare
ABZR86_RS07665 -3.9 -2.7 exodeoxyribonuclease V subunit beta compare
ABZR86_RS05905 -3.9 -8.5 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS15460 -3.9 -2.6 type I glutamate--ammonia ligase compare
ABZR86_RS11880 -3.8 -6.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR86_RS15315 -3.8 -10.2 phenylalanine 4-monooxygenase compare
ABZR86_RS02895 -3.8 -10.2 ABC transporter ATP-binding protein compare
ABZR86_RS19790 -3.8 -7.6 HPr family phosphocarrier protein compare
ABZR86_RS12200 -3.8 -7.6 ribulose-phosphate 3-epimerase compare
ABZR86_RS19235 -3.8 -2.6 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS19560 -3.8 -6.3 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS19800 -3.7 -12.9 RNase adapter RapZ compare
ABZR86_RS17085 -3.7 -7.1 type II 3-dehydroquinate dehydratase compare
ABZR86_RS01825 -3.7 -14.8 replication-associated recombination protein A compare
ABZR86_RS06580 -3.7 -3.5 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS10480 -3.7 -4.4 3-dehydroquinate synthase compare
ABZR86_RS08680 -3.7 -10.2 glutamate-5-semialdehyde dehydrogenase compare
ABZR86_RS06940 -3.6 -9.8 hypothetical protein compare
ABZR86_RS19860 -3.6 -9.7 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS12215 -3.6 -4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS11870 -3.6 -13.0 phospholipid-binding protein MlaC compare
ABZR86_RS02890 -3.6 -5.8 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS06355 -3.6 -6.7 folate-binding protein YgfZ compare
ABZR86_RS05890 -3.5 -14.6 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS15955 -3.5 -6.1 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS12505 -3.5 -8.0 SDR family oxidoreductase compare
ABZR86_RS07660 -3.5 -6.6 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS01165 -3.5 -7.7 IclR family transcriptional regulator compare
ABZR86_RS07810 -3.5 -10.4 ATP-binding protein compare
ABZR86_RS05550 -3.4 -2.4 lipopolysaccharide assembly protein LapB compare
ABZR86_RS06775 -3.4 -17.8 amidophosphoribosyltransferase compare
ABZR86_RS08845 -3.4 -6.8 DNA repair protein RadA compare
ABZR86_RS10530 -3.3 -1.9 H-NS histone family protein compare
ABZR86_RS13850 -3.3 -6.7 phosphoribosylamine--glycine ligase compare
ABZR86_RS12280 -3.3 -2.2 dihydrolipoyl dehydrogenase compare
ABZR86_RS16515 -3.2 -10.8 MFS transporter compare
ABZR86_RS12790 -3.2 -4.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
ABZR86_RS07995 -3.2 -8.3 tryptophan synthase subunit alpha compare
ABZR86_RS07885 -3.2 -6.5 cation diffusion facilitator family transporter compare
ABZR86_RS11885 -3.2 -3.7 ATP-binding cassette domain-containing protein compare
ABZR86_RS11995 -3.2 -9.5 5-formyltetrahydrofolate cyclo-ligase compare
ABZR86_RS07175 -3.2 -5.9 sigma-E factor negative regulatory protein compare
ABZR86_RS13515 -3.1 -6.0 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS12180 -3.1 -17.5 anthranilate synthase component I compare
ABZR86_RS08015 -3.1 -1.8 tRNA pseudouridine(38-40) synthase TruA compare
ABZR86_RS06630 -3.1 -5.0 phosphopyruvate hydratase compare
ABZR86_RS18880 -3.1 -6.9 glycine cleavage system protein GcvH compare
ABZR86_RS02200 -3.1 -16.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR86_RS00770 -3.0 -15.0 PhoH family protein compare
ABZR86_RS02885 -3.0 -10.0 sulfate ABC transporter permease subunit CysT compare
ABZR86_RS12885 -2.9 -2.0 magnesium-translocating P-type ATPase compare
ABZR86_RS06270 -2.9 -7.3 glycosyltransferase family 9 protein compare
ABZR86_RS02880 -2.9 -10.0 sulfate ABC transporter substrate-binding protein compare
ABZR86_RS18775 -2.9 -2.7 nucleotidyltransferase family protein compare
ABZR86_RS15515 -2.9 -5.8 nitrogen regulation protein NR(I) compare
ABZR86_RS15980 -2.8 -4.3 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS12005 -2.7 -1.8 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS07180 -2.7 -5.6 RNA polymerase sigma factor RpoE compare
ABZR86_RS18780 -2.7 -3.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS06030 -2.7 -1.5 transcription termination factor NusA compare
ABZR86_RS19795 -2.7 -7.4 PTS sugar transporter subunit IIA compare
ABZR86_RS16345 -2.7 -15.8 NADP-dependent isocitrate dehydrogenase compare
ABZR86_RS19725 -2.7 -14.5 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR86_RS01230 -2.7 -3.6 FadR/GntR family transcriptional regulator compare
ABZR86_RS06685 -2.7 -8.2 acireductone dioxygenase compare
ABZR86_RS13920 -2.5 -12.3 CDP-glycerol glycerophosphotransferase family protein compare
ABZR86_RS19865 -2.5 -3.7 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS18615 -2.5 -3.3 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS09885 -2.5 -2.3 trypsin-like peptidase domain-containing protein compare
ABZR86_RS09935 -2.5 -2.4 DUF4105 domain-containing protein compare
ABZR86_RS10205 -2.5 -5.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS15640 -2.5 -1.7 orotate phosphoribosyltransferase compare
ABZR86_RS13245 -2.4 -15.6 DEAD/DEAH box helicase compare
ABZR86_RS18960 -2.4 -8.0 TetR/AcrR family transcriptional regulator compare
ABZR86_RS07340 -2.4 -2.5 tRNA-Leu compare
ABZR86_RS11875 -2.4 -10.2 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR86_RS22135 -2.4 -4.8 hypothetical protein compare
ABZR86_RS17390 -2.4 -11.4 VOC family protein compare
ABZR86_RS13865 -2.4 -1.4 DNA topoisomerase I compare
ABZR86_RS21420 -2.4 -10.8 alpha/beta fold hydrolase compare
ABZR86_RS17560 -2.3 -9.8 NrdJb compare
ABZR86_RS05880 -2.3 -6.2 siroheme synthase CysG compare
ABZR86_RS07140 -2.3 -4.8 DNA repair protein RecO compare
ABZR86_RS15330 -2.3 -10.4 TetR/AcrR family transcriptional regulator compare
ABZR86_RS06740 -2.3 -2.3 YerC/YecD family TrpR-related protein compare
ABZR86_RS14845 -2.2 -7.3 YafY family protein compare
ABZR86_RS19805 -2.2 -5.3 HPr(Ser) kinase/phosphatase compare
ABZR86_RS08480 -2.2 -4.8 methylisocitrate lyase compare
ABZR86_RS09265 -2.2 -11.1 hypothetical protein compare
ABZR86_RS17150 -2.2 -8.6 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
ABZR86_RS13915 -2.2 -11.0 glycosyltransferase family 2 protein compare
ABZR86_RS18355 -2.2 -1.7 PepSY domain-containing protein compare
ABZR86_RS07545 -2.1 -4.2 5'-nucleotidase compare
ABZR86_RS09840 -2.1 -1.4 Trm112 family protein compare
ABZR86_RS09405 -2.1 -9.4 TolC family protein compare
ABZR86_RS18715 -2.1 -7.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABZR86_RS09380 -2.0 -6.7 response regulator transcription factor compare
ABZR86_RS10710 -2.0 -2.4 transcriptional regulator NrdR compare


Specific Phenotypes

For 37 genes in this experiment

For carbon source D-Galactose in Dyella japonica UNC79MFTsu3.2

For carbon source D-Galactose across organisms