Experiment set2IT009 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Thallium(I) acetate 0.016 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_24130 -3.2 -4.1 hypothetical protein compare
AO353_12950 -2.7 -6.3 polymerase compare
AO353_07800 -2.6 -5.6 transcriptional repressor BetI conserved
AO353_12940 -2.5 -6.0 glycosyl transferase compare
AO353_09950 -2.4 -4.9 aspartate ammonia-lyase compare
AO353_13960 -2.4 -11.3 ferredoxin-NADP reductase conserved
AO353_07105 -2.2 -1.6 biotin--protein ligase compare
AO353_07805 -2.2 -8.2 betaine-aldehyde dehydrogenase compare
AO353_04355 -2.2 -1.4 homoserine dehydrogenase compare
AO353_21625 -2.1 -2.8 Fe/S biogenesis protein NfuA compare
AO353_07810 -2.1 -11.3 choline dehydrogenase conserved
AO353_00825 -2.0 -3.3 porin compare
AO353_09235 -2.0 -6.7 phosphoglucomutase compare
AO353_04055 -1.9 -2.3 methionine--tRNA ligase compare
AO353_18780 -1.9 -5.6 cobyrinic acid a,c-diamide synthase compare
AO353_12420 -1.9 -2.4 predicted FeS cluster maintenance protein (from data) compare
AO353_10455 -1.8 -2.3 tRNA modification GTPase MnmE compare
AO353_12045 -1.6 -4.0 iron transporter compare
AO353_02140 -1.6 -7.2 BolA family transcriptional regulator compare
AO353_15785 -1.6 -5.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_26285 -1.6 -1.8 hypothetical protein compare
AO353_10620 -1.5 -4.5 hypothetical protein compare
AO353_20175 -1.5 -2.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_13200 -1.5 -7.1 exoribonuclease R compare
AO353_02000 -1.5 -2.3 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_14150 -1.5 -1.8 peptidylprolyl isomerase compare
AO353_08980 -1.4 -3.5 heme biosynthesis operon protein HemX compare
AO353_08245 -1.4 -3.2 cell division ATP-binding protein FtsE compare
AO353_13140 -1.4 -4.9 tRNA dimethylallyltransferase compare
AO353_00750 -1.4 -3.3 GntR family transcriptional regulator compare
AO353_15555 -1.4 -3.2 fumarylacetoacetase compare
AO353_19610 -1.3 -3.7 hypothetical protein compare
AO353_08165 -1.3 -2.6 pyrroline-5-carboxylate reductase compare
AO353_06585 -1.3 -4.7 hypothetical protein compare
AO353_12345 -1.3 -2.1 twin-arginine protein translocation system subunit TatC compare
AO353_04220 -1.3 -4.3 chemotaxis protein CheY compare
AO353_09890 -1.3 -3.9 phosphate ABC transporter ATP-binding protein compare
AO353_11310 -1.3 -3.2 aspartyl beta-hydroxylase compare
AO353_12935 -1.2 -2.8 glycosyltransferase compare
AO353_04930 -1.2 -2.3 flavodoxin compare
AO353_11920 -1.2 -2.1 hypothetical protein compare
AO353_09315 -1.2 -6.4 LysR family transcriptional regulator compare
AO353_28015 -1.2 -2.6 hypothetical protein compare
AO353_22645 -1.2 -2.3 hypothetical protein compare
AO353_02145 -1.2 -3.9 hypothetical protein compare
AO353_08115 -1.2 -4.6 energy transducer TonB compare
AO353_27130 -1.2 -1.6 hypothetical protein compare
AO353_14990 -1.2 -2.1 hypothetical protein compare
AO353_19770 -1.2 -2.3 peptidase compare
AO353_12125 -1.2 -5.2 glutaredoxin compare
AO353_13925 -1.2 -2.2 XRE family transcriptional regulator compare
AO353_02015 -1.1 -4.3 acetyltransferase compare
AO353_10445 -1.1 -1.5 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_13220 -1.1 -4.7 hypothetical protein compare
AO353_09895 -1.1 -5.2 phosphate ABC transporter permease compare
AO353_29145 -1.1 -2.8 HxlR family transcriptional regulator compare
AO353_00700 -1.1 -4.3 Cro/Cl family transcriptional regulator compare
AO353_05130 -1.1 -1.6 anti-anti-sigma factor compare
AO353_03580 -1.1 -2.1 ATP-dependent DNA helicase RuvB compare
AO353_17305 -1.1 -3.4 TetR family transcriptional regulator compare
AO353_01990 -1.1 -4.8 UDP-N-acetylglucosamine 2-epimerase compare
AO353_13160 -1.1 -2.0 membrane protease HflC compare
AO353_07155 -1.1 -4.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_22150 -1.1 -1.9 iron transporter compare
AO353_27090 -1.0 -1.7 hypothetical protein compare
AO353_23785 -1.0 -1.4 hypothetical protein compare
AO353_20185 -1.0 -3.9 DNA-binding protein compare
AO353_12930 -1.0 -2.4 GlcNAc-PI de-N-acetylase compare
AO353_26090 -1.0 -2.2 hypothetical protein compare
AO353_02685 -1.0 -2.4 phosphoribosylglycinamide formyltransferase compare
AO353_08315 -1.0 -4.2 multidrug transporter compare
AO353_16765 -1.0 -1.7 hypothetical protein compare
AO353_10885 -1.0 -4.4 metal ABC transporter permease compare
AO353_09945 -1.0 -2.6 LysR family transcriptional regulator compare
AO353_04175 -1.0 -3.1 glycerol uptake facilitator GlpF compare
AO353_21905 -1.0 -2.5 hypothetical protein compare
AO353_12090 -1.0 -1.4 imidazole glycerol phosphate synthase subunit HisF compare
AO353_06045 -1.0 -4.0 exodeoxyribonuclease V subunit beta compare
AO353_09900 -1.0 -6.3 phosphate ABC transporter permease compare
AO353_00460 -1.0 -1.9 TetR family transcriptional regulator compare
AO353_23910 -1.0 -2.3 response regulator compare
AO353_11850 -1.0 -3.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_20455 -1.0 -3.1 HAD family hydrolase compare
AO353_02025 -1.0 -5.5 mannose-1-phosphate guanyltransferase compare
AO353_12915 -1.0 -4.6 carbamoyltransferase compare
AO353_01915 -1.0 -1.8 GlcG protein compare
AO353_29215 -1.0 -1.7 alpha/beta hydrolase compare
AO353_05880 -0.9 -1.2 plasmid stabilization protein compare
AO353_00105 -0.9 -1.1 hypothetical protein compare
AO353_18435 -0.9 -3.4 MarR family transcriptional regulator compare
AO353_21935 -0.9 -1.8 nitrite reductase compare
AO353_20340 -0.9 -2.4 gamma-carboxygeranoyl-CoA hydratase compare
AO353_08005 -0.9 -3.7 thioesterase compare
AO353_00835 -0.9 -3.6 transporter compare
AO353_10780 -0.9 -1.2 DNA-binding protein compare
AO353_24405 -0.9 -2.1 ArsR family transcriptional regulator compare
AO353_12395 -0.9 -2.4 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_24350 -0.9 -3.1 osmotically inducible protein C compare
AO353_26195 -0.9 -1.9 hypothetical protein compare
AO353_08835 -0.9 -5.1 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO353_21430 -0.9 -1.7 hypothetical protein compare
AO353_09830 -0.9 -4.9 pyridine nucleotide-disulfide oxidoreductase compare
AO353_06040 -0.9 -2.0 exodeoxyribonuclease V subunit alpha compare
AO353_18775 -0.9 -3.6 flagellar biosynthesis protein FlhF compare
AO353_04700 -0.9 -3.8 transcriptional regulator compare
AO353_21410 -0.9 -1.7 hypothetical protein compare
AO353_18505 -0.8 -1.0 translation initiation factor 2 compare
AO353_26830 -0.8 -2.1 histidine kinase compare
AO353_02465 -0.8 -1.3 hypothetical protein compare
AO353_10710 -0.8 -3.1 tryptophan synthase subunit beta compare
AO353_20865 -0.8 -1.6 cold-shock protein compare
AO353_09785 -0.8 -2.0 hypothetical protein compare
AO353_09275 -0.8 -2.0 DNA-directed RNA polymerase subunit omega compare
AO353_08470 -0.8 -2.6 RNA pyrophosphohydrolase compare
AO353_15050 -0.8 -2.1 nitrate transport permease nrtB compare
AO353_28110 -0.8 -2.8 TetR family transcriptional regulator compare
AO353_02710 -0.8 -5.2 (p)ppGpp synthetase compare
AO353_18765 -0.8 -2.2 hypothetical protein compare
AO353_10890 -0.8 -2.8 methionine ABC transporter ATP-binding protein compare
AO353_23165 -0.8 -1.9 cupin compare
AO353_17250 -0.8 -2.1 nitrile hydratase compare
AO353_11165 -0.8 -4.3 hypothetical protein compare
AO353_12130 -0.8 -3.1 preprotein translocase subunit SecB compare
AO353_03150 -0.8 -2.3 peptidase M4 compare
AO353_00635 -0.8 -1.8 hypothetical protein compare
AO353_09905 -0.8 -4.5 phosphate-binding protein compare
AO353_22220 -0.8 -2.1 copper resistance protein CopC compare
AO353_24560 -0.8 -2.2 transcriptional regulator compare
AO353_12870 -0.8 -5.9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_27650 -0.8 -2.3 cell division protein FtsK compare
AO353_27675 -0.8 -3.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_13610 -0.8 -2.5 precorrin isomerase compare
AO353_20510 -0.8 -1.5 amidase compare
AO353_08195 -0.8 -2.6 non-canonical purine NTP pyrophosphatase compare
AO353_26220 -0.8 -1.8 hypothetical protein compare
AO353_27810 -0.8 -2.9 twitching motility protein PilT compare
AO353_20170 -0.7 -2.4 trigger factor compare
AO353_26680 -0.7 -2.1 hypothetical protein compare
AO353_23495 -0.7 -1.0 SAM-dependent methyltransferase compare
AO353_02040 -0.7 -1.4 integration host factor subunit beta compare
AO353_07505 -0.7 -3.8 dethiobiotin synthetase compare
AO353_00875 -0.7 -3.8 transcriptional regulator compare
AO353_09250 -0.7 -1.3 exodeoxyribonuclease III compare
AO353_05625 -0.7 -1.0 transcription elongation factor GreA compare
AO353_06425 -0.7 -2.3 lipoyl synthase compare
AO353_11730 -0.7 -4.0 glutamate--cysteine ligase compare
AO353_25310 -0.7 -1.6 malonate carrier protein compare
AO353_25965 -0.7 -2.1 hypothetical protein compare
AO353_21990 -0.7 -1.9 cytochrome C compare
AO353_21475 -0.7 -2.7 hypothetical protein compare
AO353_17745 -0.7 -4.5 MFS transporter compare
AO353_07205 -0.7 -2.8 lipoate--protein ligase compare
AO353_01540 -0.7 -3.1 ABC transporter substrate-binding protein compare
AO353_18585 -0.7 -3.8 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) compare
AO353_15680 -0.7 -1.8 cation-binding protein compare
AO353_19825 -0.7 -3.2 shikimate dehydrogenase compare
AO353_03250 -0.7 -1.1 gluconokinase compare
AO353_12690 -0.7 -0.7 acyl carrier protein compare
AO353_26655 -0.7 -2.2 branched-chain amino acid aminotransferase compare
AO353_23955 -0.7 -1.7 RND transporter compare
AO353_08775 -0.7 -1.1 cell division protein ZapA compare
AO353_08560 -0.7 -3.2 spermidine/putrescine ABC transporter permease compare
AO353_08600 -0.7 -2.0 TetR family transcriptional regulator compare
AO353_02250 -0.7 -1.5 chorismate synthase compare
AO353_00885 -0.7 -1.9 3-methylitaconate isomerase compare
AO353_10040 -0.7 -3.6 transcriptional regulator compare
AO353_12015 -0.7 -1.2 antitoxin compare
AO353_04190 -0.7 -1.0 glycerol-3-phosphate dehydrogenase compare
AO353_27300 -0.7 -3.1 phage tail protein compare
AO353_08170 -0.7 -2.2 hypothetical protein compare
AO353_27415 -0.7 -1.3 hypothetical protein compare
AO353_17205 -0.7 -1.4 beta-ketoadipyl CoA thiolase compare
AO353_14940 -0.7 -1.6 malate:quinone oxidoreductase compare
AO353_02180 -0.7 -2.9 hypothetical protein compare
AO353_17625 -0.7 -3.3 RNA polymerase subunit sigma compare
AO353_21770 -0.7 -1.5 3-hydroxybutyrate dehydrogenase compare
AO353_26870 -0.6 -1.1 AP endonuclease compare
AO353_03870 -0.6 -2.2 LysR family transcriptional regulator compare
AO353_14260 -0.6 -3.1 50s ribosomal protein l13 compare
AO353_24600 -0.6 -1.3 hypothetical protein compare
AO353_12030 -0.6 -2.1 hypothetical protein compare
AO353_13150 -0.6 -3.7 GTPase HflX compare
AO353_22375 -0.6 -1.7 cytochrome c-550 PedF compare
AO353_13155 -0.6 -1.9 hypothetical protein compare
AO353_15880 -0.6 -3.3 pilus assembly protein PilW compare
AO353_15265 -0.6 -2.5 peptidase compare
AO353_02460 -0.6 -2.5 hypothetical protein compare
AO353_18305 -0.6 -1.6 RNA helicase compare
AO353_21055 -0.6 -2.2 glycosyl hydrolase compare
AO353_27585 -0.6 -1.1 DNA repair protein compare
AO353_08060 -0.6 -1.2 hypothetical protein compare
AO353_07610 -0.6 -0.7 hypothetical protein compare
AO353_14420 -0.6 -1.9 molecular chaperone DnaK compare
AO353_14340 -0.6 -1.8 phospholipid-binding protein compare
AO353_17340 -0.6 -2.2 glycerol acyltransferase compare
AO353_15175 -0.6 -3.2 alpha/beta hydrolase compare
AO353_16020 -0.6 -2.4 tRNA (cmo5U34)-methyltransferase compare
AO353_11280 -0.6 -2.3 phage tail protein compare
AO353_25015 -0.6 -1.6 polyketide cyclase compare
AO353_11915 -0.6 -3.1 agmatine deiminase compare


Specific Phenotypes

For 5 genes in this experiment

For stress Thallium(I) acetate in Pseudomonas fluorescens FW300-N2E3

For stress Thallium(I) acetate across organisms