Experiment set2IT009 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Thallium(I) acetate 0.016 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
AO353_21480 +7.2 27.9 Cro/Cl family transcriptional regulator conserved
AO353_03015 +3.5 12.8 arginine N-succinyltransferase compare
AO353_03025 +3.0 9.0 acetylornithine aminotransferase compare
AO353_03020 +2.7 10.9 arginine N-succinyltransferase compare
AO353_09040 +2.7 3.8 diaminopimelate epimerase compare
AO353_25450 +2.1 2.9 cyanate hydratase compare
AO353_17750 +1.9 4.0 transcriptional regulator compare
AO353_09045 +1.6 3.0 hypothetical protein compare
AO353_00520 +1.6 6.3 universal stress protein UspA compare
AO353_04240 +1.5 2.6 chemotaxis protein CheW compare
AO353_12710 +1.5 2.2 thioredoxin compare
AO353_29005 +1.5 2.3 hypothetical protein compare
AO353_25925 +1.4 1.9 hypothetical protein compare
AO353_00760 +1.4 2.2 hypothetical protein compare
AO353_07645 +1.4 1.7 sarcosine oxidase subunit gamma compare
AO353_01190 +1.3 1.9 hypothetical protein compare
AO353_25585 +1.3 2.0 argininosuccinate lyase compare
AO353_26935 +1.3 2.5 LysR family transcriptional regulator compare
AO353_22280 +1.3 2.0 hypothetical protein compare
AO353_03010 +1.3 5.8 succinylglutamate-semialdehyde dehydrogenase compare
AO353_22700 +1.3 2.2 LexA family transcriptional regulator compare
AO353_03275 +1.2 2.6 LysR family transcriptional regulator compare
AO353_19295 +1.2 1.5 hypothetical protein compare
AO353_28495 +1.2 2.7 hypothetical protein compare
AO353_02720 +1.2 5.3 cysteine synthase compare
AO353_28640 +1.1 2.6 hypothetical protein compare
AO353_27000 +1.1 1.5 hypothetical protein compare
AO353_09060 +1.1 2.3 hypothetical protein compare
AO353_05280 +1.0 2.0 4-carboxymuconolactone decarboxylase compare
AO353_17295 +1.0 8.8 multidrug transporter compare
AO353_15445 +1.0 2.7 disulfide bond formation protein B compare
AO353_12020 +1.0 2.2 hypothetical protein compare
AO353_21595 +1.0 4.6 serine/threonine protein kinase compare
AO353_22520 +1.0 1.2 hypothetical protein compare
AO353_27460 +1.0 2.2 hypothetical protein compare
AO353_17300 +1.0 4.9 antibiotic transporter compare
AO353_07795 +1.0 6.9 beta-aspartyl peptidase conserved
AO353_03005 +1.0 4.2 succinylarginine dihydrolase compare
AO353_20840 +1.0 1.9 ribose pyranase compare
AO353_01355 +0.9 4.8 3-oxoacyl-ACP synthase compare
AO353_00920 +0.9 3.7 alpha-L-glutamate ligase compare
AO353_00660 +0.9 1.8 transcriptional regulator compare
AO353_11940 +0.9 2.1 hypothetical protein compare
AO353_23590 +0.9 1.8 ArsR family transcriptional regulator compare
AO353_26390 +0.9 1.3 glyoxalase compare
AO353_23410 +0.9 1.1 hypothetical protein compare
AO353_15410 +0.9 1.3 hypothetical protein compare
AO353_23945 +0.9 1.6 hypothetical protein compare
AO353_03100 +0.9 1.0 XRE family transcriptional regulator compare
AO353_08650 +0.9 2.2 aliphatic sulfonate ABC transporter ATP-binding protein compare
AO353_15450 +0.9 6.1 ubiquinol oxidase subunit II compare
AO353_24105 +0.9 4.2 LysR family transcriptional regulator compare
AO353_13920 +0.9 2.0 dihydroxyacetone kinase compare
AO353_06100 +0.9 1.1 thymidylate synthase compare
AO353_25000 +0.8 2.3 magnesium transporter compare
AO353_11945 +0.8 1.1 4-oxalocrotonate tautomerase compare
AO353_22135 +0.8 2.1 anaerobic ribonucleoside-triphosphate reductase activating protein compare
AO353_00260 +0.8 1.3 hypothetical protein compare
AO353_15830 +0.8 1.8 transcriptional regulator compare
AO353_23155 +0.8 1.5 IclR family transcriptional regulator compare
AO353_16425 +0.8 1.4 Fe-S metabolism protein SufE compare
AO353_17935 +0.8 2.0 hypothetical protein compare
AO353_14945 +0.8 2.3 hypothetical protein compare
AO353_04845 +0.8 5.6 LysR family transcriptional regulator compare
AO353_20810 +0.8 1.4 hypothetical protein compare
AO353_16305 +0.8 2.9 pilin assembly protein compare
AO353_16055 +0.8 2.0 hypothetical protein compare
AO353_00560 +0.8 1.3 23S rRNA methyltransferase compare
AO353_18955 +0.8 3.0 acyl-CoA thioesterase compare
AO353_02330 +0.8 1.7 allantoicase compare
AO353_20410 +0.8 1.4 hypothetical protein compare
AO353_24300 +0.8 2.6 transcriptional regulator compare
AO353_26440 +0.8 1.5 hypothetical protein compare
AO353_17290 +0.8 3.3 multidrug transporter compare
AO353_00065 +0.8 2.3 oxidoreductase compare
AO353_25335 +0.8 1.2 malonate decarboxylase acyl carrier protein compare
AO353_04935 +0.8 3.9 histidine kinase compare
AO353_18215 +0.8 3.0 multidrug DMT transporter permease compare
AO353_17005 +0.8 1.9 hypothetical protein compare
AO353_13030 +0.7 3.7 cytoplasmic protein compare
AO353_07685 +0.7 2.1 hypothetical protein compare
AO353_29000 +0.7 2.0 pyridoxal-5'-phosphate-dependent protein subunit beta compare
AO353_02750 +0.7 3.3 hypothetical protein compare
AO353_00690 +0.7 2.7 amino acid ABC transporter substrate-binding protein compare
AO353_17645 +0.7 4.6 peptidase M48 compare
AO353_13530 +0.7 2.0 ABC transporter ATP-binding protein compare
AO353_24540 +0.7 2.1 hypothetical protein compare
AO353_02630 +0.7 1.8 5,6-dimethylbenzimidazole synthase compare
AO353_12665 +0.7 1.5 glycosyl transferase compare
AO353_12565 +0.7 1.7 type II secretion system protein GspH compare
AO353_24925 +0.7 2.1 ABC transporter ATP-binding protein compare
AO353_03210 +0.7 1.8 GNAT family acetyltransferase compare
AO353_18745 +0.7 1.2 flagellar biosynthesis protein flip compare
AO353_11690 +0.7 5.6 choline transporter compare
AO353_02885 +0.7 0.9 flagellar biosynthesis protein FlgN compare
AO353_10725 +0.7 1.1 dodecin flavoprotein compare
AO353_01275 +0.7 1.7 hypothetical protein compare
AO353_09105 +0.7 3.3 LysR family transcriptional regulator compare
AO353_04410 +0.7 1.4 phosphoribosylglycinamide formyltransferase compare
AO353_18485 +0.7 1.7 nitroreductase compare
AO353_03290 +0.7 1.2 peptide deformylase compare
AO353_18575 +0.7 2.6 tyrosine aminotransferase (EC 2.6.1.57) (from data) compare
AO353_26525 +0.7 1.2 hypothetical protein compare
AO353_23850 +0.7 2.1 nitrilase compare
AO353_23220 +0.7 1.2 hypothetical protein compare
AO353_00755 +0.7 2.3 hypothetical protein compare
AO353_13015 +0.7 2.3 nitrate reductase compare
AO353_27525 +0.7 1.6 AraC family transcriptional regulator compare
AO353_05550 +0.7 3.0 pseudouridine synthase compare
AO353_14010 +0.7 2.4 GntR family transcriptional regulator compare
AO353_13685 +0.7 2.6 3-dehydroquinate dehydratase compare
AO353_05060 +0.7 2.1 pressure-regulated protein compare
AO353_16195 +0.7 1.2 DNA mismatch repair protein MutT compare
AO353_19310 +0.7 1.3 enoyl-CoA hydratase compare
AO353_24640 +0.7 2.2 hypothetical protein compare
AO353_00020 +0.7 2.7 delta-aminolevulinic acid dehydratase compare
AO353_10730 +0.7 1.4 hypothetical protein compare
AO353_28960 +0.7 1.5 Fis family transcriptional regulator compare
AO353_25745 +0.7 1.5 LysR family transcriptional regulator compare
AO353_09560 +0.6 0.7 type VI secretion protein compare
AO353_25475 +0.6 1.9 multidrug resistance protein compare
AO353_08210 +0.6 2.8 tRNA (guanine-N7)-methyltransferase compare
AO353_29185 +0.6 2.6 TetR family transcriptional regulator compare
AO353_15730 +0.6 1.3 hypothetical protein compare
AO353_19760 +0.6 1.4 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO353_11340 +0.6 1.2 MarR family transcriptional regulator compare
AO353_25515 +0.6 3.4 iron ABC transporter substrate-binding protein compare
AO353_27400 +0.6 1.2 hypothetical protein compare
AO353_04185 +0.6 2.8 DeoR family transcriptional regulator compare
AO353_25430 +0.6 2.1 ABC transporter permease compare
AO353_15930 +0.6 2.0 peptidase M23 compare
AO353_24990 +0.6 1.4 translation elongation factor compare
AO353_06125 +0.6 1.9 ArsR family transcriptional regulator compare
AO353_14955 +0.6 1.7 hypothetical protein compare
AO353_28545 +0.6 2.9 hypothetical protein compare
AO353_24870 +0.6 1.4 hypothetical protein compare
AO353_21530 +0.6 1.5 type VI secretion protein compare
AO353_13660 +0.6 3.2 tRNA-dihydrouridine synthase B compare
AO353_02220 +0.6 0.9 hypothetical protein compare
AO353_28380 +0.6 1.2 GntR family transcriptional regulator compare
AO353_03830 +0.6 0.9 antibiotic biosynthesis monooxygenase compare
AO353_24400 +0.6 1.8 ACP phosphodiesterase compare
AO353_07915 +0.6 2.2 hypothetical protein compare
AO353_14795 +0.6 2.0 molybdopterin-synthase adenylyltransferase compare
AO353_21805 +0.6 1.5 peptidylprolyl isomerase compare
AO353_01680 +0.6 2.6 histidine kinase compare
AO353_15900 +0.6 1.1 GTP-binding protein compare
AO353_03415 +0.6 2.3 glucokinase compare
AO353_00955 +0.6 1.3 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_19270 +0.6 2.5 LuxR family transcriptional regulator compare
AO353_28935 +0.6 1.2 ATPase compare
AO353_00090 +0.6 1.3 hypothetical protein compare
AO353_28055 +0.6 1.3 hypothetical protein compare
AO353_26630 +0.6 1.9 ArsR family transcriptional regulator compare
AO353_03335 +0.6 2.3 hypothetical protein compare
AO353_21745 +0.6 2.4 ketodeoxygluconokinase compare
AO353_21110 +0.6 1.0 hypothetical protein compare
AO353_28475 +0.6 2.0 NmrA family transcriptional regulator compare
AO353_27010 +0.6 1.3 alpha-ketoglutarate-dependent dioxygenase compare
AO353_28555 +0.6 0.9 LysR family transcriptional regulator compare
AO353_20000 +0.6 1.7 phosphoribosyltransferase compare
AO353_26575 +0.6 2.0 dihydropyrimidine dehydrogenase compare
AO353_00540 +0.6 1.2 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_20100 +0.6 2.0 hypothetical protein compare
AO353_24930 +0.6 1.9 Fe-S cluster assembly protein SufD compare
AO353_07145 +0.6 4.0 anhydro-N-acetylmuramic acid kinase compare
AO353_01905 +0.6 2.5 TetR family transcriptional regulator compare
AO353_24595 +0.6 0.9 hypothetical protein compare
AO353_26075 +0.6 2.4 FAD-binding protein compare
AO353_20680 +0.5 1.5 cell division protein compare
AO353_19070 +0.5 1.2 hypothetical protein compare
AO353_24875 +0.5 2.0 histidine kinase compare
AO353_23520 +0.5 1.7 muconolactone delta-isomerase compare
AO353_18690 +0.5 2.4 flagellar assembly protein FliH compare
AO353_22215 +0.5 1.1 hypothetical protein compare
AO353_05510 +0.5 3.0 N-acetyl-anhydromuranmyl-L-alanine amidase compare
AO353_20255 +0.5 1.3 transcriptional regulator compare
AO353_08020 +0.5 2.8 hypothetical protein compare
AO353_05620 +0.5 1.9 MFS transporter compare
AO353_17515 +0.5 1.9 short-chain dehydrogenase compare
AO353_11415 +0.5 2.0 hypothetical protein compare
AO353_24850 +0.5 1.6 aspartate aminotransferase compare
AO353_29010 +0.5 2.0 hypothetical protein compare
AO353_02595 +0.5 1.3 cobalamin synthase compare
AO353_02860 +0.5 1.9 flagellar biosynthesis protein FlgB compare
AO353_04260 +0.5 2.5 LysR family transcriptional regulator compare
AO353_07290 +0.5 3.1 mannose-1-phosphate guanylyltransferase compare
AO353_29280 +0.5 1.0 hypothetical protein compare
AO353_03835 +0.5 2.9 AraC family transcriptional regulator compare
AO353_23045 +0.5 1.2 hypothetical protein compare
AO353_25025 +0.5 1.8 cupin compare
AO353_15875 +0.5 2.0 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_18675 +0.5 2.3 flagellar hook-basal body protein FliE compare
AO353_27520 +0.5 1.4 3-demethylubiquinone-9 3-methyltransferase compare
AO353_24135 +0.5 1.1 hypothetical protein compare
AO353_17850 +0.5 1.2 SAM-dependent methyltransferase compare
AO353_26415 +0.5 1.3 hypothetical protein compare
AO353_14905 +0.5 2.3 AraC family transcriptional regulator compare
AO353_04325 +0.5 0.9 hypothetical protein compare
AO353_28295 +0.5 0.7 GNAT family acetyltransferase compare


Specific Phenotypes

For 5 genes in this experiment

For stress Thallium(I) acetate in Pseudomonas fluorescens FW300-N2E3

For stress Thallium(I) acetate across organisms