Experiment set2IT009 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Chloramphenicol 0.001 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS07230 +1.1 3.1 hypothetical protein compare
CA265_RS23305 +1.0 1.9 hypothetical protein compare
CA265_RS23675 +0.9 3.0 hypothetical protein compare
CA265_RS21395 +0.9 2.4 hypothetical protein compare
CA265_RS14415 +0.8 6.9 pseudouridine synthase compare
CA265_RS06030 +0.8 1.6 SelT/selW/selH selenoprotein compare
CA265_RS06405 +0.7 2.3 hypothetical protein compare
CA265_RS23100 +0.7 2.2 hypothetical protein compare
CA265_RS14825 +0.7 1.0 outer membrane protein assembly factor BamD compare
CA265_RS21365 +0.7 1.6 thiol reductase thioredoxin compare
CA265_RS19465 +0.7 2.2 protein tyrosine phosphatase compare
CA265_RS09425 +0.7 1.7 hypothetical protein compare
CA265_RS00490 +0.6 2.3 hypothetical protein compare
CA265_RS08775 +0.6 1.0 hypothetical protein compare
CA265_RS20670 +0.6 2.6 hypothetical protein compare
CA265_RS03275 +0.6 2.2 hypothetical protein compare
CA265_RS04445 +0.6 2.2 hypothetical protein compare
CA265_RS07755 +0.6 1.0 hypothetical protein compare
CA265_RS10615 +0.6 2.9 diacylglycerol kinase compare
CA265_RS14015 +0.6 1.6 transcriptional regulator compare
CA265_RS02165 +0.6 3.6 hypothetical protein compare
CA265_RS09650 +0.6 1.3 diaminopimelate decarboxylase compare
CA265_RS19055 +0.6 3.7 nitronate monooxygenase compare
CA265_RS24130 +0.6 1.6 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein compare
CA265_RS12800 +0.6 2.5 NAD(P)H-dependent oxidoreductase compare
CA265_RS22800 +0.5 3.2 glycosyl transferase compare
CA265_RS20320 +0.5 4.8 hypothetical protein compare
CA265_RS09320 +0.5 1.8 hypothetical protein compare
CA265_RS07550 +0.5 2.2 hypothetical protein compare
CA265_RS19705 +0.5 1.8 tRNA-binding protein compare
CA265_RS17950 +0.5 1.3 hypothetical protein compare
CA265_RS17390 +0.5 2.9 PadR family transcriptional regulator compare
CA265_RS03125 +0.5 1.6 hypothetical protein compare
CA265_RS08315 +0.5 0.9 tRNA-Lys compare
CA265_RS18790 +0.5 2.6 four helix bundle protein compare
CA265_RS05260 +0.5 2.0 hypothetical protein compare
CA265_RS21295 +0.5 2.4 hypothetical protein compare
CA265_RS15070 +0.5 2.0 hypothetical protein compare
CA265_RS05060 +0.5 2.1 hypothetical protein compare
CA265_RS18490 +0.5 1.7 hypothetical protein compare
CA265_RS02575 +0.5 2.3 hypothetical protein compare
CA265_RS19575 +0.5 1.1 glycoside hydrolase compare
CA265_RS02125 +0.5 2.0 hypothetical protein compare
CA265_RS19970 +0.5 2.4 cyclic nucleotide-binding protein compare
CA265_RS02765 +0.5 1.6 cell division protein ZapA compare
CA265_RS12855 +0.5 1.3 hypothetical protein compare
CA265_RS19960 +0.5 2.3 hypothetical protein compare
CA265_RS09705 +0.5 1.2 copper oxidase compare
CA265_RS22655 +0.5 1.7 hypothetical protein compare
CA265_RS25060 +0.5 1.1 hypothetical protein compare
CA265_RS10480 +0.5 1.6 hypothetical protein compare
CA265_RS18225 +0.5 2.5 DNA-binding response regulator compare
CA265_RS19485 +0.5 1.8 hypothetical protein compare
CA265_RS25400 +0.5 2.3 fatty acid desaturase compare
CA265_RS25150 +0.5 1.9 hypothetical protein compare
CA265_RS22010 +0.5 0.6 hypothetical protein compare
CA265_RS05985 +0.4 0.8 hypothetical protein compare
CA265_RS06775 +0.4 2.3 competence protein TfoX compare
CA265_RS04040 +0.4 1.6 hypothetical protein compare
CA265_RS25035 +0.4 2.5 molecular chaperone DnaJ compare
CA265_RS24845 +0.4 1.1 STAS/SEC14 domain-containing protein compare
CA265_RS20270 +0.4 1.2 methionine--tRNA ligase compare
CA265_RS20315 +0.4 3.6 hypothetical protein compare
CA265_RS23470 +0.4 2.1 homoserine kinase (EC 2.7.1.39) (from data) compare
CA265_RS17420 +0.4 1.4 glyoxalase compare
CA265_RS01200 +0.4 2.0 hypothetical protein compare
CA265_RS19390 +0.4 2.2 UDP-2,3-diacylglucosamine hydrolase compare
CA265_RS23090 +0.4 2.1 transcriptional regulator compare
CA265_RS07840 +0.4 1.6 hypothetical protein compare
CA265_RS16725 +0.4 2.2 hypothetical protein compare
CA265_RS01150 +0.4 1.5 hypothetical protein compare
CA265_RS19980 +0.4 2.0 hypothetical protein compare
CA265_RS01560 +0.4 1.6 circadian clock protein KaiB compare
CA265_RS04700 +0.4 2.2 hypothetical protein compare
CA265_RS16990 +0.4 1.2 hypothetical protein compare
CA265_RS18455 +0.4 1.6 nucleotidyltransferase compare
CA265_RS20395 +0.4 1.0 hypothetical protein compare
CA265_RS24115 +0.4 2.3 hypothetical protein compare
CA265_RS20070 +0.4 1.4 NadR compare
CA265_RS19645 +0.4 2.2 GNAT family N-acetyltransferase compare
CA265_RS15370 +0.4 2.4 glycosyl hydrolase compare
CA265_RS15535 +0.4 1.0 methionine sulfoxide reductase B compare
CA265_RS10665 +0.4 2.2 Rossman fold protein, TIGR00730 family compare
CA265_RS21255 +0.4 3.0 hypothetical protein compare
CA265_RS18805 +0.4 0.7 hypothetical protein compare
CA265_RS19150 +0.4 2.2 amidophosphoribosyltransferase compare
CA265_RS01950 +0.4 1.1 hypothetical protein compare
CA265_RS03495 +0.4 0.9 cytochrome c biogenesis protein compare
CA265_RS14390 +0.4 1.4 hypothetical protein compare
CA265_RS06010 +0.4 1.2 hypothetical protein compare
CA265_RS03815 +0.4 2.6 AraC family transcriptional regulator compare
CA265_RS10585 +0.4 2.2 transcriptional regulator compare
CA265_RS13200 +0.4 2.5 phosphatase PAP2 family protein compare
CA265_RS24815 +0.4 1.6 hypothetical protein compare
CA265_RS23020 +0.4 2.5 hypothetical protein compare
CA265_RS24025 +0.4 1.2 hypothetical protein compare
CA265_RS18450 +0.4 1.9 peptidase compare
CA265_RS24790 +0.4 2.7 peptidylprolyl isomerase compare
CA265_RS17290 +0.4 0.6 tRNA-Lys compare
CA265_RS06055 +0.4 2.3 neuraminidase compare
CA265_RS10525 +0.4 2.4 sialidase compare
CA265_RS17555 +0.4 2.5 hypothetical protein compare
CA265_RS09335 +0.4 1.9 DUF4442 domain-containing protein compare
CA265_RS21520 +0.4 2.2 D-alanyl-D-alanine dipeptidase compare
CA265_RS12780 +0.4 1.2 hypothetical protein compare
CA265_RS12765 +0.4 1.9 SRPBCC family protein compare
CA265_RS19640 +0.4 1.3 hypothetical protein compare
CA265_RS16420 +0.4 1.7 hypothetical protein compare
CA265_RS25280 +0.4 1.4 four helix bundle protein compare
CA265_RS16270 +0.4 1.8 hypothetical protein compare
CA265_RS23485 +0.4 1.3 hypothetical protein compare
CA265_RS22535 +0.4 1.1 hypothetical protein compare
CA265_RS04100 +0.4 1.3 uroporphyrinogen-III C-methyltransferase compare
CA265_RS16030 +0.4 2.0 hypothetical protein compare
CA265_RS18765 +0.4 2.3 hypothetical protein compare
CA265_RS19105 +0.4 1.3 hypothetical protein compare
CA265_RS11435 +0.4 1.7 polyketide cyclase compare
CA265_RS24755 +0.4 1.9 hypothetical protein compare
CA265_RS11750 +0.4 1.5 hypothetical protein compare
CA265_RS24385 +0.4 0.8 GNAT family N-acetyltransferase compare
CA265_RS15400 +0.4 1.8 CDP-alcohol phosphatidyltransferase compare
CA265_RS08570 +0.4 0.6 dehydratase compare
CA265_RS16740 +0.4 2.1 hypothetical protein compare
CA265_RS02930 +0.4 1.6 beta-glucanase compare
CA265_RS06885 +0.4 0.5 hypothetical protein compare
CA265_RS02945 +0.4 1.2 hypothetical protein compare
CA265_RS24220 +0.4 2.0 hypothetical protein compare
CA265_RS13655 +0.4 2.2 hypothetical protein compare
CA265_RS04335 +0.4 2.5 hypothetical protein compare
CA265_RS24955 +0.3 1.5 methyltransferase type 11 compare
CA265_RS21330 +0.3 2.1 TetR family transcriptional regulator compare
CA265_RS19820 +0.3 2.3 LacI family transcriptional regulator compare
CA265_RS17560 +0.3 2.2 peptidylprolyl isomerase compare
CA265_RS21760 +0.3 1.6 hypothetical protein compare
CA265_RS21290 +0.3 1.5 hypothetical protein compare
CA265_RS21570 +0.3 1.2 hypothetical protein compare
CA265_RS20950 +0.3 1.7 hypothetical protein compare
CA265_RS19345 +0.3 2.0 hypothetical protein compare
CA265_RS23865 +0.3 2.1 DNA mismatch repair protein MutS compare
CA265_RS23840 +0.3 1.8 S1/P1 Nuclease compare
CA265_RS05945 +0.3 1.4 polysaccharide biosynthesis protein GtrA compare
CA265_RS15835 +0.3 1.3 antibiotic biosynthesis monooxygenase compare
CA265_RS08970 +0.3 1.0 hypothetical protein compare
CA265_RS18190 +0.3 2.1 cupin compare
CA265_RS18945 +0.3 1.8 LacI family transcriptional regulator compare
CA265_RS22540 +0.3 1.6 hypothetical protein compare
CA265_RS01465 +0.3 1.7 hypothetical protein compare
CA265_RS16495 +0.3 1.4 hypothetical protein compare
CA265_RS22360 +0.3 2.3 hypothetical protein compare
CA265_RS18550 +0.3 0.6 N-acetyltransferase compare
CA265_RS10710 +0.3 2.2 hypothetical protein compare
CA265_RS02675 +0.3 1.8 hypothetical protein compare
CA265_RS15910 +0.3 2.6 hypothetical protein compare
CA265_RS04960 +0.3 1.5 hypothetical protein compare
CA265_RS14170 +0.3 0.9 DNA repair protein compare
CA265_RS20280 +0.3 0.9 DoxX family protein compare
CA265_RS18845 +0.3 1.3 GNAT family N-acetyltransferase compare
CA265_RS21595 +0.3 1.3 esterase compare
CA265_RS18205 +0.3 1.9 hypothetical protein compare
CA265_RS05135 +0.3 1.6 ferritin compare
CA265_RS18875 +0.3 1.7 hypothetical protein compare
CA265_RS09930 +0.3 1.3 transcriptional regulator compare
CA265_RS25360 +0.3 1.3 phosphoribosyltransferase compare
CA265_RS08195 +0.3 1.6 hypothetical protein compare
CA265_RS23390 +0.3 1.1 alkyl hydroperoxide reductase compare
CA265_RS25395 +0.3 1.6 cysteine hydrolase compare
CA265_RS19535 +0.3 2.1 hypothetical protein compare
CA265_RS10810 +0.3 1.5 hypothetical protein compare
CA265_RS18270 +0.3 1.3 hypothetical protein compare
CA265_RS24005 +0.3 0.9 OsmC family peroxiredoxin compare
CA265_RS20380 +0.3 1.8 hemagglutinin compare
CA265_RS02825 +0.3 1.6 hypothetical protein compare
CA265_RS11055 +0.3 1.6 hypothetical protein compare
CA265_RS10030 +0.3 1.8 hypothetical protein compare
CA265_RS19860 +0.3 1.3 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) (from data) compare
CA265_RS03450 +0.3 1.1 hypothetical protein compare
CA265_RS22805 +0.3 1.8 glycosyl transferase compare
CA265_RS07885 +0.3 1.7 response regulator compare
CA265_RS04650 +0.3 2.2 two-component sensor histidine kinase compare
CA265_RS12960 +0.3 1.7 DUF4440 domain-containing protein compare
CA265_RS16585 +0.3 1.1 hypothetical protein compare
CA265_RS19940 +0.3 2.3 hypothetical protein compare
CA265_RS21155 +0.3 1.5 formyltetrahydrofolate deformylase compare
CA265_RS18605 +0.3 1.5 hypothetical protein compare
CA265_RS25165 +0.3 2.3 glycosyl transferase compare
CA265_RS21060 +0.3 0.7 hypothetical protein compare
CA265_RS07110 +0.3 1.1 hypothetical protein compare
CA265_RS03015 +0.3 1.4 tRNA-specific adenosine deaminase compare
CA265_RS13965 +0.3 1.3 hypothetical protein compare
CA265_RS15280 +0.3 1.9 glycine C-acetyltransferase compare
CA265_RS24995 +0.3 1.8 hypothetical protein compare
CA265_RS21220 +0.3 1.2 hypothetical protein compare
CA265_RS19835 +0.3 2.0 hypothetical protein compare
CA265_RS10185 +0.3 1.6 GDSL family lipase compare
CA265_RS13190 +0.3 2.0 hypothetical protein compare
CA265_RS20920 +0.3 1.5 hypothetical protein compare
CA265_RS14620 +0.3 1.7 hypothetical protein compare
CA265_RS21975 +0.3 2.1 peptidase S41 compare
CA265_RS23980 +0.3 1.9 patatin compare
CA265_RS01940 +0.3 2.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in stress experiments

For stress Chloramphenicol across organisms