Experiment set2IT009 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS04485 -4.7 -12.2 riboflavin synthase compare
MMJJ_RS05445 -4.3 -2.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS00275 -4.0 -2.8 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS04475 -4.0 -5.5 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS01750 -4.0 -3.9 ferrous iron transport protein A compare
MMJJ_RS02035 -4.0 -10.3 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS00580 -3.9 -3.2 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS08080 -3.8 -12.3 TIGR00300 family protein compare
MMJJ_RS08625 -3.8 -8.4 magnesium/cobalt transporter CorA compare
MMJJ_RS06695 -3.8 -4.4 amidohydrolase compare
MMJJ_RS06750 -3.6 -4.0 homoaconitase large subunit compare
MMJJ_RS06625 -3.4 -3.1 pyruvate synthase subunit PorB compare
MMJJ_RS05650 -3.3 -3.9 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS06510 -3.3 -4.3 LL-diaminopimelate aminotransferase compare
MMJJ_RS08020 -3.2 -9.6 nucleotidyltransferase domain-containing protein compare
MMJJ_RS03670 -3.2 -4.8 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS03110 -3.2 -4.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS03840 -3.1 -4.2 DHH family phosphoesterase compare
MMJJ_RS06040 -3.1 -5.0 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS09175 -3.1 -1.4 anthranilate synthase component I compare
MMJJ_RS08660 -3.0 -4.1 acetylornithine transaminase compare
MMJJ_RS01755 -3.0 -3.5 ferrous iron transport protein B compare
MMJJ_RS07000 -3.0 -2.8 TrkH family potassium uptake protein compare
MMJJ_RS05575 -3.0 -4.8 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS03760 -3.0 -4.4 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS08795 -3.0 -2.8 phosphoglucosamine mutase compare
MMJJ_RS04200 -2.9 -7.8 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS02200 -2.9 -11.3 chorismate pyruvate-lyase family protein compare
MMJJ_RS06485 -2.8 -3.8 phosphoglycerate kinase compare
MMJJ_RS06840 -2.8 -4.6 nickel-dependent hydrogenase large subunit compare
MMJJ_RS05950 -2.8 -4.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS07670 -2.8 -17.7 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS07170 -2.7 -6.0 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS07380 -2.7 -9.4 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS05415 -2.7 -3.1 hypothetical protein compare
MMJJ_RS06490 -2.7 -3.6 methanogenesis marker 2 protein compare
MMJJ_RS08870 -2.7 -2.1 2-isopropylmalate synthase compare
MMJJ_RS07665 -2.7 -20.2 formate dehydrogenase subunit alpha compare
MMJJ_RS03095 -2.6 -3.2 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS05610 -2.5 -5.0 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS03190 -2.5 -3.7 phosphopyruvate hydratase compare
MMJJ_RS07245 -2.5 -4.8 amidohydrolase family protein compare
MMJJ_RS04155 -2.5 -7.1 hypothetical protein compare
MMJJ_RS05620 -2.5 -5.1 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS06270 -2.4 -8.4 dethiobiotin synthase compare
MMJJ_RS05330 -2.4 -2.8 DNA polymerase II large subunit compare
MMJJ_RS00560 -2.4 -3.9 homoisocitrate dehydrogenase compare
MMJJ_RS01870 -2.4 -3.1 methanogenesis marker 15 protein compare
MMJJ_RS03620 -2.4 -6.7 DUF2097 domain-containing protein compare
MMJJ_RS04685 -2.4 -9.8 carbamoyltransferase HypF compare
MMJJ_RS03815 -2.4 -2.7 nascent polypeptide-associated complex protein compare
MMJJ_RS05190 -2.3 -8.0 gamma carbonic anhydrase family protein compare
MMJJ_RS08005 -2.3 -17.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS06910 -2.3 -3.8 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS08130 -2.3 -1.4 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS03820 -2.3 -3.4 hydrogenase formation protein HypD compare
MMJJ_RS02920 -2.3 -2.8 30S ribosomal protein S27ae compare
MMJJ_RS07660 -2.3 -11.4 carbonic anhydrase compare
MMJJ_RS08055 -2.3 -7.9 methanogenesis marker 14 protein compare
MMJJ_RS07705 -2.2 -3.3 GTP-binding protein EngB compare
MMJJ_RS07655 -2.2 -14.6 hypothetical protein compare
MMJJ_RS09190 -2.2 -2.1 tryptophan synthase subunit beta compare
MMJJ_RS01600 -2.2 -3.5 radical SAM protein compare
MMJJ_RS03125 -2.2 -4.6 GMC oxidoreductase compare
MMJJ_RS00040 -2.2 -9.1 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS06875 -2.1 -2.8 hypothetical protein compare
MMJJ_RS01935 -2.1 -4.9 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS00045 -2.1 -14.0 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS06240 -2.1 -2.3 dihydropteroate synthase-like protein compare
MMJJ_RS07785 -2.1 -2.8 fumarate reductase subunit A compare
MMJJ_RS00270 -2.1 -3.2 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS08840 -2.1 -4.8 calcium/sodium antiporter compare
MMJJ_RS00060 -2.1 -13.5 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS04995 -2.1 -5.7 Tfx family DNA-binding protein compare
MMJJ_RS02045 -2.1 -3.4 molybdenum cofactor guanylyltransferase compare
MMJJ_RS07720 -2.1 -2.9 UPF0058 family protein compare
MMJJ_RS03895 -2.1 -3.5 hydrogenase expression/formation protein HypE compare
MMJJ_RS06860 -2.1 -4.8 hypothetical protein compare
MMJJ_RS04800 -2.1 -6.5 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS07410 -2.1 -4.3 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS04730 -2.1 -3.2 tyrosine decarboxylase MfnA compare
MMJJ_RS09375 -2.1 -2.3 hypothetical protein compare
MMJJ_RS07945 -2.0 -3.0 4Fe-4S binding protein compare
MMJJ_RS06250 -2.0 -2.7 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS00065 -2.0 -8.7 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS01960 -2.0 -7.4 glycosyltransferase family 2 protein compare
MMJJ_RS00035 -2.0 -13.7 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS08155 -2.0 -3.6 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS06725 -2.0 -10.7 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS06915 -2.0 -12.8 helix-turn-helix domain-containing protein compare
MMJJ_RS04150 -2.0 -3.7 DUF5379 domain-containing protein compare
MMJJ_RS03230 -1.9 -3.8 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS05595 -1.9 -4.6 hypothetical protein compare
MMJJ_RS03580 -1.9 -3.3 TIGR00303 family protein compare
MMJJ_RS07640 -1.9 -16.0 cache domain-containing protein compare
MMJJ_RS00645 -1.9 -11.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS07980 -1.9 -9.1 biotin synthase BioB compare
MMJJ_RS00055 -1.9 -8.9 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS08035 -1.9 -8.3 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS07950 -1.9 -3.2 4Fe-4S binding protein compare
MMJJ_RS01200 -1.9 -3.1 PRC-barrel domain-containing protein compare
MMJJ_RS03875 -1.8 -3.1 CBS domain-containing protein compare
MMJJ_RS08850 -1.8 -3.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS03200 -1.8 -2.6 uroporphyrinogen-III synthase compare
MMJJ_RS05655 -1.8 -6.3 HisA/HisF family protein compare
MMJJ_RS00050 -1.8 -10.4 AAA family ATPase compare
MMJJ_RS00080 -1.8 -11.8 DUF166 domain-containing protein compare
MMJJ_RS07650 -1.8 -13.8 formate/nitrite transporter family protein compare
MMJJ_RS04985 -1.8 -3.4 glutamyl-tRNA reductase compare
MMJJ_RS00070 -1.8 -3.1 CooT family nickel-binding protein compare
MMJJ_RS08535 -1.8 -3.9 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS07350 -1.8 -4.0 4Fe-4S binding protein compare
MMJJ_RS05155 -1.8 -6.4 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS00210 -1.8 -2.3 DUF530 family protein compare
MMJJ_RS03055 -1.8 -3.5 hypothetical protein compare
MMJJ_RS05260 -1.8 -4.9 ATP-grasp domain-containing protein compare
MMJJ_RS00075 -1.7 -9.8 AAA family ATPase compare
MMJJ_RS00125 -1.7 -2.9 KEOPS complex subunit Cgi121 compare
MMJJ_RS06905 -1.7 -2.0 hypothetical protein compare
MMJJ_RS08330 -1.7 -3.1 SufD family Fe-S cluster assembly protein compare
MMJJ_RS01360 -1.7 -2.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS04615 -1.7 -4.1 methanogenesis marker 3 protein compare
MMJJ_RS07425 -1.7 -9.3 MBL fold metallo-hydrolase compare
MMJJ_RS04670 -1.7 -3.7 DUF2117 domain-containing protein compare
MMJJ_RS02040 -1.7 -1.8 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS05535 -1.7 -11.6 hypothetical protein compare
MMJJ_RS05810 -1.7 -5.4 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS04145 -1.7 -7.9 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS07345 -1.7 -6.4 homocysteine biosynthesis protein compare
MMJJ_RS02935 -1.7 -4.4 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS08065 -1.7 -3.6 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS03270 -1.7 -1.6 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS00570 -1.7 -1.9 ribonuclease P compare
MMJJ_RS07635 -1.6 -9.3 response regulator transcription factor compare
MMJJ_RS03005 -1.6 -2.8 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS07960 -1.6 -2.8 quinolinate synthase NadA compare
MMJJ_RS05935 -1.6 -2.5 Era-like GTP-binding protein compare
MMJJ_RS04050 -1.6 -1.3 dihydroneopterin aldolase family protein compare
MMJJ_RS02090 -1.6 -4.5 tyramine--L-glutamate ligase compare
MMJJ_RS04675 -1.6 -5.5 thiamine pyrophosphate-binding protein compare
MMJJ_RS03150 -1.6 -4.5 2-phospho-L-lactate transferase compare
MMJJ_RS06255 -1.6 -6.3 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS08340 -1.5 -4.5 archaeoflavoprotein AfpA compare
MMJJ_RS03615 -1.5 -2.3 cobalt-precorrin-8 methylmutase compare
MMJJ_RS08430 -1.5 -5.0 small nuclear ribonucleoprotein compare
MMJJ_RS06010 -1.5 -6.0 hypothetical protein compare
MMJJ_RS01415 -1.5 -2.5 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS03660 -1.5 -3.4 DUF447 family protein compare
MMJJ_RS08095 -1.5 -3.6 cobyric acid synthase CobQ compare
MMJJ_RS08335 -1.5 -1.9 ABC transporter ATP-binding protein compare
MMJJ_RS06185 -1.5 -4.3 cobalamin biosynthesis protein compare
MMJJ_RS05995 -1.5 -2.7 ATP-binding cassette domain-containing protein compare
MMJJ_RS05720 -1.5 -3.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS07155 -1.5 -7.7 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS07725 -1.5 -4.7 DNA primase DnaG compare
MMJJ_RS03225 -1.5 -2.3 4Fe-4S binding protein compare
MMJJ_RS00205 -1.4 -4.4 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS05490 -1.4 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS06050 -1.4 -8.7 molybdopterin molybdotransferase MoeA compare
MMJJ_RS06265 -1.4 -9.3 8-amino-7-oxononanoate synthase compare
MMJJ_RS02190 -1.4 -11.0 molybdopterin biosynthesis protein compare
MMJJ_RS04655 -1.4 -4.1 FAD-dependent oxidoreductase compare
MMJJ_RS07470 -1.4 -1.7 50S ribosome-binding GTPase compare
MMJJ_RS05930 -1.4 -1.4 cell division protein SepF compare
MMJJ_RS04975 -1.4 -2.2 glycosyltransferase family 4 protein compare
MMJJ_RS06805 -1.4 -2.8 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS07995 -1.4 -7.5 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS01345 -1.4 -4.0 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS01690 -1.4 -2.7 methanogenesis marker 12 protein compare
MMJJ_RS00345 -1.4 -8.4 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS06030 -1.4 -5.1 4Fe-4S binding protein compare
MMJJ_RS06600 -1.4 -3.1 DUF555 domain-containing protein compare
MMJJ_RS06110 -1.4 -1.8 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS05195 -1.4 -5.8 hypothetical protein compare
MMJJ_RS08855 -1.4 -4.2 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS04565 -1.3 -2.6 sirohydrochlorin nickelochelatase compare
MMJJ_RS00530 -1.3 -10.0 cobalt ECF transporter T component CbiQ compare
MMJJ_RS04980 -1.3 -3.6 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS06180 -1.3 -2.2 tryptophan--tRNA ligase compare
MMJJ_RS02055 -1.3 -8.1 GTP 3',8-cyclase MoaA compare
MMJJ_RS01475 -1.3 -1.7 signal recognition particle-docking protein FtsY compare
MMJJ_RS01355 -1.3 -2.2 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS06035 -1.3 -6.9 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS03245 -1.3 -1.8 UMP kinase compare
MMJJ_RS01820 -1.3 -4.2 MJ1244 family protein compare
MMJJ_RS00370 -1.3 -1.6 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS08500 -1.3 -5.2 L-sulfolactate dehydrogenase compare
MMJJ_RS03295 -1.3 -9.4 PHP domain-containing protein compare
MMJJ_RS08620 -1.3 -2.7 DUF373 family protein compare
MMJJ_RS06760 -1.2 -3.3 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS03115 -1.2 -5.6 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS00520 -1.2 -6.5 PDGLE domain-containing protein compare
MMJJ_RS00355 -1.2 -2.4 ribonuclease P protein component 4 compare
MMJJ_RS07190 -1.2 -3.0 RtcB family protein compare
MMJJ_RS04520 -1.2 -3.7 coenzyme F430 synthase compare
MMJJ_RS01405 -1.2 -1.4 proline--tRNA ligase compare
MMJJ_RS03500 -1.2 -8.0 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMJJ_RS06865 -1.2 -1.8 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03920 -1.2 -8.2 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS00550 -1.2 -5.9 AIR synthase-related protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms