Experiment set2IT009 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

200 most detrimental genes:

  gene name fitness t score description  
MMJJ_RS04415 +2.2 12.9 hypothetical protein compare
MMJJ_RS04375 +0.6 1.5 hypothetical protein compare
MMJJ_RS08935 +0.6 1.2 TIGR00288 family NYN domain-containing protein compare
MMJJ_RS03410 +0.6 2.5 hypothetical protein compare
MMJJ_RS03835 +0.6 2.8 DUF504 domain-containing protein compare
MMJJ_RS03360 +0.5 1.1 hypothetical protein compare
MMJJ_RS03725 +0.5 1.8 sulfurtransferase TusA family protein compare
MMJJ_RS05915 +0.5 1.8 multiprotein bridging factor aMBF1 compare
MMJJ_RS01785 +0.5 0.9 50S ribosomal protein L14e compare
MMJJ_RS04005 +0.5 4.2 acetate--CoA ligase family protein compare
MMJJ_RS00420 +0.5 3.1 CBS domain-containing protein compare
MMJJ_RS07935 +0.4 0.7 protein fwdD compare
MMJJ_RS08775 +0.4 3.5 PfkB family carbohydrate kinase compare
MMJJ_RS06740 +0.4 2.3 energy-coupling factor ABC transporter substrate-binding protein compare
MMJJ_RS09380 +0.4 1.4 hypothetical protein compare
MMJJ_RS07280 +0.4 2.8 phosphomannomutase/phosphoglucomutase compare
MMJJ_RS09205 +0.4 2.4 hypothetical protein compare
MMJJ_RS00415 +0.4 2.1 DedA family protein compare
MMJJ_RS05745 +0.4 3.2 type II/IV secretion system ATPase subunit compare
MMJJ_RS05685 +0.4 2.5 class III signal peptide-containing protein compare
MMJJ_RS04480 +0.4 1.0 hypothetical protein compare
MMJJ_RS05740 +0.4 3.2 archaellar assembly protein FlaJ compare
MMJJ_RS08470 +0.4 1.2 ferredoxin family protein compare
MMJJ_RS07690 +0.4 2.8 glycosyltransferase family 4 protein compare
MMJJ_RS08785 +0.4 2.1 D-sedoheptulose 7-phosphate isomerase compare
MMJJ_RS05510 +0.4 2.4 archaellum operon transcriptional activator EarA family protein compare
MMJJ_RS08515 +0.4 1.5 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMJJ_RS06810 +0.4 3.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha compare
MMJJ_RS07595 +0.4 1.9 hypothetical protein compare
MMJJ_RS08490 +0.4 1.7 rubrerythrin family protein compare
MMJJ_RS03605 +0.3 2.0 TIGR00297 family protein compare
MMJJ_RS06800 +0.3 2.1 prefoldin subunit alpha compare
MMJJ_RS07175 +0.3 2.9 DEAD/DEAH box helicase compare
MMJJ_RS05760 +0.3 2.9 flagellar protein F compare
MMJJ_RS08810 +0.3 0.5 DUF4040 domain-containing protein compare
MMJJ_RS04360 +0.3 2.6 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS05980 +0.3 2.2 DUF5400 domain-containing protein compare
MMJJ_RS09365 +0.3 1.5 hypothetical protein compare
MMJJ_RS08040 +0.3 2.5 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS09390 +0.3 1.0 hypothetical protein compare
MMJJ_RS04585 +0.3 2.3 phenylacetate--CoA ligase compare
MMJJ_RS08730 +0.3 2.6 glycosyltransferase family 4 protein compare
MMJJ_RS05750 +0.3 2.5 flagellar accessory protein FlaH compare
MMJJ_RS05335 +0.3 2.0 heavy metal-binding domain-containing protein compare
MMJJ_RS08750 +0.3 2.5 glycosyltransferase compare
MMJJ_RS04345 +0.3 1.4 DUF2080 family transposase-associated protein compare
MMJJ_RS00335 +0.3 1.4 chemotaxis protein CheW compare
MMJJ_RS08780 +0.3 1.5 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
MMJJ_RS05870 +0.3 1.2 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMJJ_RS09370 +0.3 1.3 heavy-metal-associated domain-containing protein compare
MMJJ_RS05820 +0.3 1.5 DUF2304 domain-containing protein compare
MMJJ_RS05755 +0.3 2.3 flagellar protein G compare
MMJJ_RS01100 +0.3 0.6 helix-turn-helix domain-containing protein compare
MMJJ_RS06470 +0.3 2.1 tripartite tricarboxylate transporter permease compare
MMJJ_RS06455 +0.3 2.2 YeeE/YedE family protein compare
MMJJ_RS05505 +0.3 2.6 hypothetical protein compare
MMJJ_RS06755 +0.3 2.3 diadenylate cyclase compare
MMJJ_RS06480 +0.3 2.1 hypothetical protein compare
MMJJ_RS02125 +0.3 1.0 hypothetical protein compare
MMJJ_RS09230 +0.3 1.5 hypothetical protein compare
MMJJ_RS03185 +0.3 0.5 alanine--tRNA ligase compare
MMJJ_RS00950 +0.3 1.3 DUF111 family protein compare
MMJJ_RS07765 +0.3 1.2 DMT family protein compare
MMJJ_RS05115 +0.3 1.3 P-II family nitrogen regulator compare
MMJJ_RS07235 +0.3 2.2 coenzyme F420 hydrogenase subunit alpha compare
MMJJ_RS08930 +0.3 1.8 5'/3'-nucleotidase SurE compare
MMJJ_RS04780 +0.2 1.0 nucleic acid-binding protein compare
MMJJ_RS03345 +0.2 1.6 hypothetical protein compare
MMJJ_RS08195 +0.2 1.2 DUF4186 domain-containing protein compare
MMJJ_RS05400 +0.2 1.5 CoA-binding protein compare
MMJJ_RS05900 +0.2 2.0 ATP-binding cassette domain-containing protein compare
MMJJ_RS09020 +0.2 1.3 hypothetical protein compare
MMJJ_RS06130 +0.2 1.3 hypothetical protein compare
MMJJ_RS06745 +0.2 1.9 energy-coupling factor ABC transporter permease compare
MMJJ_RS06640 +0.2 1.6 YfcE family phosphodiesterase compare
MMJJ_RS06710 +0.2 2.0 TldD/PmbA family protein compare
MMJJ_RS05355 +0.2 1.6 DUF2121 domain-containing protein compare
MMJJ_RS01060 +0.2 1.5 ABC transporter ATP-binding protein compare
MMJJ_RS07210 +0.2 1.8 AmmeMemoRadiSam system protein B compare
MMJJ_RS00745 +0.2 0.8 hypothetical protein compare
MMJJ_RS03850 +0.2 1.4 nucleoside-diphosphate kinase compare
MMJJ_RS07240 +0.2 2.0 MBL fold metallo-hydrolase compare
MMJJ_RS06205 +0.2 1.9 EamA family transporter compare
MMJJ_RS05815 +0.2 1.2 hypothetical protein compare
MMJJ_RS00870 +0.2 1.1 F420-nonreducing hydrogenase compare
MMJJ_RS08015 +0.2 1.4 HAD family hydrolase compare
MMJJ_RS03015 +0.2 1.7 Ig-like domain-containing protein compare
MMJJ_RS07890 +0.2 1.4 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMJJ_RS08365 +0.2 1.4 DsrE family protein compare
MMJJ_RS08760 +0.2 1.7 glycosyltransferase family 9 protein compare
MMJJ_RS04215 +0.2 1.8 DMT family transporter compare
MMJJ_RS03045 +0.2 1.5 hypothetical protein compare
MMJJ_RS06680 +0.2 1.2 DUF366 family protein compare
MMJJ_RS06520 +0.2 1.6 TldD/PmbA family protein compare
MMJJ_RS06440 +0.2 1.5 DUF4870 domain-containing protein compare
MMJJ_RS06055 +0.2 1.6 S-methyl-5-thioribose-1-phosphate isomerase compare
MMJJ_RS04250 +0.2 1.3 thioredoxin family protein compare
MMJJ_RS08400 +0.2 0.7 CoB--CoM heterodisulfide reductase subunit C compare
MMJJ_RS06550 +0.2 1.6 ABC transporter permease compare
MMJJ_RS01855 +0.2 1.5 MBL fold metallo-hydrolase compare
MMJJ_RS08790 +0.2 1.7 hypothetical protein compare
MMJJ_RS06720 +0.2 1.6 mechanosensitive ion channel family protein compare
MMJJ_RS01615 +0.2 1.0 MoaD/ThiS family protein compare
MMJJ_RS06460 +0.2 1.4 cytochrome c compare
MMJJ_RS08445 +0.2 1.1 cell division ATPase MinD compare
MMJJ_RS06465 +0.2 1.4 hypothetical protein compare
MMJJ_RS01210 +0.2 0.5 hypothetical protein compare
MMJJ_RS08830 +0.2 0.9 hypothetical protein compare
MMJJ_RS08705 +0.2 1.5 AEC family transporter compare
MMJJ_RS07795 +0.2 1.1 cupin domain-containing protein compare
MMJJ_RS03375 +0.2 1.4 hypothetical protein compare
MMJJ_RS03515 +0.2 1.1 GPR1/FUN34/YaaH family transporter compare
MMJJ_RS04820 +0.2 1.4 hypothetical protein compare
MMJJ_RS04105 +0.2 1.6 prepilin peptidase compare
MMJJ_RS05500 +0.2 1.7 hypothetical protein compare
MMJJ_RS09215 +0.2 1.6 right-handed parallel beta-helix repeat-containing protein compare
MMJJ_RS08165 +0.2 0.9 thermonuclease family protein compare
MMJJ_RS04165 +0.2 1.5 sodium:solute symporter compare
MMJJ_RS05765 +0.2 0.3 flagellar protein E compare
MMJJ_RS06075 +0.2 1.2 DNA-binding protein Alba compare
MMJJ_RS05585 +0.2 1.3 hypothetical protein compare
MMJJ_RS08770 +0.2 1.0 HAD family hydrolase compare
MMJJ_RS05925 +0.2 1.5 DUF2099 family protein compare
MMJJ_RS05975 +0.2 1.1 sulfurtransferase TusA family protein compare
MMJJ_RS07205 +0.2 0.9 MTH895/ArsE family thioredoxin-like protein compare
MMJJ_RS07230 +0.2 1.1 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS09060 +0.2 1.3 hypothetical protein compare
MMJJ_RS03510 +0.2 1.2 acyl-CoA dehydratase activase compare
MMJJ_RS06430 +0.2 1.2 haloacid dehalogenase compare
MMJJ_RS02965 +0.2 1.0 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMJJ_RS03585 +0.2 0.3 methanogenesis marker 6 protein compare
MMJJ_RS06120 +0.2 1.2 DUF4013 domain-containing protein compare
MMJJ_RS03425 +0.2 0.8 DUF2080 family transposase-associated protein compare
MMJJ_RS07905 +0.2 1.3 DUF89 domain-containing protein compare
MMJJ_RS05200 +0.2 1.3 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMJJ_RS06770 +0.2 1.4 hypothetical protein compare
MMJJ_RS00315 +0.2 1.2 methyl-accepting chemotaxis protein compare
MMJJ_RS02140 +0.2 1.1 preflagellin peptidase FlaK compare
MMJJ_RS06765 +0.2 1.4 hypothetical protein compare
MMJJ_RS02345 +0.2 1.2 ATP-binding protein compare
MMJJ_RS06495 +0.2 0.6 hypothetical protein compare
MMJJ_RS08370 +0.2 0.9 hypothetical protein compare
MMJJ_RS05390 +0.2 1.2 tRNA pseudouridine(13) synthase TruD compare
MMJJ_RS07220 +0.2 1.3 coenzyme F420 hydrogenase subunit beta compare
MMJJ_RS06505 +0.2 0.7 prephenate dehydratase compare
MMJJ_RS01530 +0.2 0.6 YwbE family protein compare
MMJJ_RS03750 +0.2 1.0 rubredoxin compare
MMJJ_RS00405 +0.2 1.1 flavodoxin family protein compare
MMJJ_RS07215 +0.2 1.3 TIGR00341 family protein compare
MMJJ_RS09245 +0.2 0.7 hypothetical protein compare
MMJJ_RS04715 +0.2 0.8 hypothetical protein compare
MMJJ_RS09200 +0.2 1.3 Nre family DNA repair protein compare
MMJJ_RS02980 +0.1 1.1 TatD family hydrolase compare
MMJJ_RS07500 +0.1 1.2 hypothetical protein compare
MMJJ_RS07450 +0.1 1.0 hypothetical protein compare
MMJJ_RS00150 +0.1 1.0 DUF2180 family protein compare
MMJJ_RS06950 +0.1 1.2 4-demethylwyosine synthase TYW1 compare
MMJJ_RS08350 +0.1 1.4 heavy metal translocating P-type ATPase compare
MMJJ_RS04240 +0.1 1.2 molybdate ABC transporter substrate-binding protein compare
MMJJ_RS07010 +0.1 0.9 preprotein translocase subunit Sec61beta compare
MMJJ_RS08310 +0.1 1.0 ZIP family metal transporter compare
MMJJ_RS01140 +0.1 0.7 helix-turn-helix domain-containing protein compare
MMJJ_RS02180 +0.1 0.9 DHH family phosphoesterase compare
MMJJ_RS04825 +0.1 1.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
MMJJ_RS06190 +0.1 1.3 7-cyano-7-deazaguanine synthase compare
MMJJ_RS04070 +0.1 1.4 DUF2341 domain-containing protein compare
MMJJ_RS01205 +0.1 1.1 DNA adenine methylase compare
MMJJ_RS04830 +0.1 1.0 zinc dependent phospholipase C family protein compare
MMJJ_RS07835 +0.1 1.1 UPF0489 family protein compare
MMJJ_RS07680 +0.1 1.0 glucose-6-phosphate isomerase compare
MMJJ_RS06735 +0.1 1.1 cobalt ECF transporter T component CbiQ compare
MMJJ_RS02185 +0.1 1.0 TIGR00296 family protein compare
MMJJ_RS06790 +0.1 1.2 nucleotidyltransferase family protein compare
MMJJ_RS00085 +0.1 1.0 substrate-binding domain-containing protein compare
MMJJ_RS03545 +0.1 1.0 flagella protein F compare
MMJJ_RS02245 +0.1 0.9 DUF432 domain-containing protein compare
MMJJ_RS01300 +0.1 1.0 MarR family transcriptional regulator compare
MMJJ_RS02285 +0.1 0.9 class III signal peptide-containing protein compare
MMJJ_RS08580 +0.1 0.7 YkgJ family cysteine cluster protein compare
MMJJ_RS05955 +0.1 1.1 radical SAM protein compare
MMJJ_RS07445 +0.1 1.0 RlmF-related methyltransferase compare
MMJJ_RS08100 +0.1 0.9 hypothetical protein compare
MMJJ_RS08885 +0.1 0.9 cysteine--tRNA ligase compare
MMJJ_RS07965 +0.1 0.6 hypothetical protein compare
MMJJ_RS01850 +0.1 0.7 RNA 2',3'-cyclic phosphodiesterase compare
MMJJ_RS00155 +0.1 1.1 DUF2193 domain-containing protein compare
MMJJ_RS02290 +0.1 0.9 MarR family transcriptional regulator compare
MMJJ_RS03025 +0.1 1.1 Ig-like domain-containing protein compare
MMJJ_RS06045 +0.1 0.9 hypothetical protein compare
MMJJ_RS08740 +0.1 1.1 class I SAM-dependent methyltransferase compare
MMJJ_RS00775 +0.1 1.1 hypothetical protein compare
MMJJ_RS03685 +0.1 1.1 indolepyruvate ferredoxin oxidoreductase subunit alpha compare
MMJJ_RS06280 +0.1 1.1 hypothetical protein compare
MMJJ_RS04690 +0.1 1.0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS08555 +0.1 0.9 redox-regulated ATPase YchF compare
MMJJ_RS09225 +0.1 0.8 hypothetical protein compare
MMJJ_RS05440 +0.1 0.9 serine/threonine protein kinase compare
MMJJ_RS06960 +0.1 1.1 CAP domain-containing protein compare
MMJJ_RS05030 +0.1 1.0 orotate phosphoribosyltransferase-like protein compare
MMJJ_RS00030 +0.1 1.0 thymidylate synthase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms