Experiment set2IT008 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Gluconic Acid sodium salt carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_77 -6.7 -4.6 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4597 -6.1 -10.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_71 -5.9 -7.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_4596 -5.8 -11.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3839 -5.8 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5175 -5.5 -17.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4826 -5.4 -9.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3842 -5.3 -7.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4047 -5.2 -7.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_4825 -5.2 -11.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_2258 -5.2 -12.0 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3610 -5.1 -6.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4279 -5.0 -15.7 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3751 -5.0 -16.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2863 -4.6 -10.6 Gluconate permease compare
Pf6N2E2_5176 -4.5 -13.0 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3752 -4.5 -21.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_64 -4.5 -3.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2885 -4.5 -9.4 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3782 -4.4 -6.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4278 -4.3 -14.8 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_4564 -4.3 -8.7 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3630 -4.2 -10.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4048 -4.0 -8.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5177 -3.9 -11.0 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3253 -3.8 -8.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3783 -3.7 -7.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4759 -3.7 -16.7 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_3841 -3.7 -8.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4277 -3.6 -11.7 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_3346 -3.6 -9.7 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_5156 -3.5 -4.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2073 -3.5 -9.6 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5150 -3.5 -8.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_66 -3.4 -7.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_50 -3.3 -10.4 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3940 -3.3 -12.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3248 -3.2 -4.9 Probable transmembrane protein compare
Pf6N2E2_3252 -3.2 -8.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5014 -3.1 -2.4 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3170 -2.9 -8.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2899 -2.9 -6.3 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_4276 -2.9 -7.3 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_63 -2.9 -6.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_4761 -2.8 -12.1 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_5006 -2.8 -11.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3932 -2.7 -3.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4764 -2.7 -7.3 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_4763 -2.7 -13.2 Biotin synthesis protein BioC compare
Pf6N2E2_2465 -2.6 -7.7 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5553 -2.6 -8.3 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_5728 -2.6 -5.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4369 -2.5 -3.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4762 -2.5 -4.7 Biotin synthesis protein BioH compare
Pf6N2E2_5579 -2.5 -6.2 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_2074 -2.4 -2.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4631 -2.3 -9.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_3349 -2.3 -4.2 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_302 -2.3 -6.4 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_4638 -2.2 -3.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5950 -2.2 -5.1 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_4659 -2.1 -8.1 Lipoprotein, putative compare
Pf6N2E2_4077 -2.1 -2.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2753 -2.0 -3.1 HtrA protease/chaperone protein compare
Pf6N2E2_5520 -2.0 -8.1 Sensory box histidine kinase compare
Pf6N2E2_4454 -1.9 -6.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3984 -1.9 -11.3 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5494 -1.8 -6.3 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_4803 -1.8 -2.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4009 -1.8 -10.6 GGDEF domain protein compare
Pf6N2E2_2758 -1.8 -12.7 L-aspartate oxidase (EC 1.4.3.16) compare
Pf6N2E2_248 -1.8 -9.6 hypothetical protein compare
Pf6N2E2_3251 -1.7 -10.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2864 -1.7 -2.0 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_5527 -1.7 -3.3 Cold shock protein CspC compare
Pf6N2E2_4658 -1.6 -4.7 FIG00955006: hypothetical protein compare
Pf6N2E2_1758 -1.6 -3.0 Transcriptional regulator, MarR family compare
Pf6N2E2_5666 -1.6 -7.9 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3661 -1.5 -4.5 hypothetical protein compare
Pf6N2E2_2514 -1.5 -4.1 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_5103 -1.5 -1.9 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_4678 -1.5 -1.4 hypothetical protein compare
Pf6N2E2_5155 -1.2 -3.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2480 -1.2 -2.4 FIG00957636: hypothetical protein compare
Pf6N2E2_2065 -1.2 -2.6 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_4824 -1.2 -3.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_4362 -1.1 -2.9 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_613 -1.1 -1.7 lipoprotein, putative compare
Pf6N2E2_5667 -1.1 -6.1 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_309 -1.1 -2.3 FIG00957702: hypothetical protein compare
Pf6N2E2_234 -1.1 -3.3 FIG00454312: hypothetical protein compare
Pf6N2E2_3938 -1.1 -8.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_4417 -1.1 -4.2 Protein of unknown function DUF484 compare
Pf6N2E2_1886 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_3933 -1.1 -6.3 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_5862 -1.1 -2.3 Lipoprotein, putative compare
Pf6N2E2_5030 -1.1 -5.7 Transcriptional regulator, AsnC family compare
Pf6N2E2_4204 -1.1 -1.4 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5945 -1.0 -3.5 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C compare
Pf6N2E2_1717 -1.0 -6.0 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf6N2E2_5677 -1.0 -1.2 Carbon storage regulator compare
Pf6N2E2_1288 -1.0 -2.9 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_4372 -1.0 -3.6 FIG00460773: hypothetical protein compare
Pf6N2E2_3607 -1.0 -4.3 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5316 -1.0 -1.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3460 -1.0 -1.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5676 -1.0 -2.8 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_5766 -1.0 -1.4 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_3351 -1.0 -3.2 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4083 -0.9 -3.9 hypothetical protein compare
Pf6N2E2_1162 -0.9 -1.9 Transmembrane amino acid efflux protein compare
Pf6N2E2_1584 -0.9 -3.0 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_4205 -0.9 -2.7 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_1625 -0.9 -2.2 Ferric reductase (1.6.99.14) compare
Pf6N2E2_4579 -0.9 -1.0 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_5536 -0.9 -1.3 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3264 -0.9 -1.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_1782 -0.9 -2.5 STAS domain protein compare
Pf6N2E2_3454 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_3535 -0.9 -4.5 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf6N2E2_2549 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_5740 -0.8 -4.1 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_2176 -0.8 -1.7 Amidases related to nicotinamidase compare
Pf6N2E2_2518 -0.8 -1.8 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_2986 -0.8 -2.6 Transcriptional regulator, LuxR family compare
Pf6N2E2_3461 -0.8 -1.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5190 -0.8 -5.8 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_48 -0.8 -3.1 FIG00955661: hypothetical protein compare
Pf6N2E2_3908 -0.8 -4.1 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_1636 -0.8 -4.9 Ferrichrome-iron receptor compare
Pf6N2E2_3533 -0.8 -3.1 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_2634 -0.8 -5.0 Potassium uptake protein TrkH compare
Pf6N2E2_70 -0.8 -2.3 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3480 -0.8 -1.3 Transcriptional regulator, ArsR family compare
Pf6N2E2_2756 -0.8 -4.5 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_3534 -0.8 -2.1 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2217 -0.8 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_663 -0.8 -2.2 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_1718 -0.7 -1.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_2068 -0.7 -4.4 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_5979 -0.7 -4.3 D-galactonate regulator, IclR family compare
Pf6N2E2_5743 -0.7 -3.0 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Pf6N2E2_3537 -0.7 -3.3 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_1632 -0.7 -3.3 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_2487 -0.7 -1.0 FIG00956090: hypothetical protein compare
Pf6N2E2_2282 -0.7 -3.0 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_2984 -0.7 -1.4 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_2286 -0.7 -2.0 FIG00953287: hypothetical protein compare
Pf6N2E2_1605 -0.7 -4.4 Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) compare
Pf6N2E2_51 -0.7 -2.9 hypothetical protein compare
Pf6N2E2_4120 -0.7 -5.5 Trk system potassium uptake protein TrkA compare
Pf6N2E2_828 -0.7 -3.3 Transcriptional regulator, TetR family compare
Pf6N2E2_3282 -0.7 -1.8 FIG005080: Possible exported protein compare
Pf6N2E2_5955 -0.7 -2.8 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_1932 -0.7 -3.0 Transcriptional regulator, IclR family compare
Pf6N2E2_5257 -0.7 -4.2 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_367 -0.7 -2.0 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_2391 -0.7 -4.1 FIG137360: hypothetical protein compare
Pf6N2E2_5668 -0.7 -2.3 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_1220 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_2045 -0.7 -2.4 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
Pf6N2E2_4146 -0.7 -1.9 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_1783 -0.7 -1.4 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2323 -0.7 -2.3 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_4618 -0.7 -2.4 Chemotaxis signal transduction protein compare
Pf6N2E2_1660 -0.7 -1.2 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_2285 -0.7 -1.0 FIG00954079: hypothetical protein compare
Pf6N2E2_5027 -0.7 -5.0 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_2384 -0.6 -2.0 CmpX compare
Pf6N2E2_1834 -0.6 -1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_3021 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_3531 -0.6 -3.4 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_5741 -0.6 -2.9 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf6N2E2_1603 -0.6 -1.9 hypothetical protein compare
Pf6N2E2_65 -0.6 -1.9 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf6N2E2_4418 -0.6 -0.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_451 -0.6 -1.7 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_3532 -0.6 -3.4 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf6N2E2_5738 -0.6 -3.8 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_4612 -0.6 -3.1 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_1492 -0.6 -1.9 No significant database matches compare
Pf6N2E2_1317 -0.6 -2.0 P-hydroxyphenylacetate hydroxylase C2:oxygenase component compare
Pf6N2E2_5258 -0.6 -3.2 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2363 -0.6 -2.6 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Pf6N2E2_2060 -0.6 -4.2 CobN component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_2588 -0.6 -1.2 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_2496 -0.6 -1.3 FIG00956575: hypothetical protein compare
Pf6N2E2_544 -0.6 -1.5 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_4797 -0.6 -1.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4206 -0.6 -1.4 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5476 -0.6 -1.3 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_504 -0.6 -1.3 DNA-binding response regulator compare
Pf6N2E2_1705 -0.6 -1.1 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5746 -0.6 -1.1 Cobalamin synthase compare
Pf6N2E2_2264 -0.6 -1.9 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_1545 -0.6 -2.6 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2693 -0.6 -1.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5077 -0.6 -1.5 hypothetical protein compare
Pf6N2E2_1215 -0.6 -1.4 probable membrane protein YPO2362 compare
Pf6N2E2_6140 -0.6 -0.7 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in carbon source experiments

For carbon source D-Gluconic Acid sodium salt across organisms