Experiment set2IT008 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Thallium(I) acetate 0.008 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_07800 -3.5 -4.2 transcriptional repressor BetI conserved
AO353_14220 -3.4 -2.3 ribosomal large subunit pseudouridine synthase D compare
AO353_21625 -2.9 -2.6 Fe/S biogenesis protein NfuA compare
AO353_09720 -2.8 -2.6 hypothetical protein compare
AO353_02005 -2.8 -1.8 hypothetical protein compare
AO353_13960 -2.5 -10.5 ferredoxin-NADP reductase conserved
AO353_12950 -2.4 -6.7 polymerase compare
AO353_12940 -2.3 -6.0 glycosyl transferase compare
AO353_12045 -2.1 -4.4 iron transporter compare
AO353_12880 -2.1 -3.1 ADP-heptose--LPS heptosyltransferase compare
AO353_07805 -2.0 -7.2 betaine-aldehyde dehydrogenase compare
AO353_00825 -1.9 -4.1 porin compare
AO353_07810 -1.9 -10.7 choline dehydrogenase conserved
AO353_13140 -1.9 -5.6 tRNA dimethylallyltransferase compare
AO353_02000 -1.8 -2.8 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_24130 -1.8 -3.3 hypothetical protein compare
AO353_09890 -1.7 -4.3 phosphate ABC transporter ATP-binding protein compare
AO353_03580 -1.7 -2.1 ATP-dependent DNA helicase RuvB compare
AO353_03585 -1.6 -2.9 ATP-dependent DNA helicase RuvA compare
AO353_20565 -1.6 -1.0 tRNA-Ala compare
AO353_11850 -1.6 -4.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_02040 -1.6 -2.5 integration host factor subunit beta compare
AO353_18780 -1.6 -5.1 cobyrinic acid a,c-diamide synthase compare
AO353_12420 -1.6 -2.5 predicted FeS cluster maintenance protein (from data) compare
AO353_04055 -1.6 -1.4 methionine--tRNA ligase compare
AO353_06455 -1.6 -2.4 D-alanyl-D-alanine carboxypeptidase compare
AO353_09235 -1.5 -5.4 phosphoglucomutase compare
AO353_21905 -1.5 -3.6 hypothetical protein compare
AO353_13100 -1.5 -1.0 GTPase RsgA compare
AO353_13200 -1.5 -6.6 exoribonuclease R compare
AO353_01685 -1.5 -1.9 hypothetical protein compare
AO353_05625 -1.4 -2.0 transcription elongation factor GreA compare
AO353_04810 -1.4 -1.5 hypothetical protein compare
AO353_10620 -1.4 -3.9 hypothetical protein compare
AO353_22025 -1.4 -2.2 iron-sulfur cluster repair di-iron protein compare
AO353_12935 -1.4 -2.6 glycosyltransferase compare
AO353_24255 -1.4 -3.0 hypothetical protein compare
AO353_07155 -1.4 -5.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_20175 -1.4 -2.6 ATP-dependent Clp protease proteolytic subunit compare
AO353_18540 -1.3 -2.5 pseudouridine synthase compare
AO353_22645 -1.3 -2.1 hypothetical protein compare
AO353_07610 -1.3 -1.3 hypothetical protein compare
AO353_09030 -1.3 -1.1 iron donor protein CyaY compare
AO353_20185 -1.3 -4.6 DNA-binding protein compare
AO353_10885 -1.2 -4.6 metal ABC transporter permease compare
AO353_27090 -1.2 -2.0 hypothetical protein compare
AO353_25955 -1.2 -2.9 NIPSNAP family containing protein compare
AO353_10890 -1.2 -3.4 methionine ABC transporter ATP-binding protein compare
AO353_15785 -1.2 -5.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_10730 -1.2 -1.4 hypothetical protein compare
AO353_08165 -1.2 -2.5 pyrroline-5-carboxylate reductase compare
AO353_19750 -1.2 -2.1 diaminopimelate epimerase compare
AO353_06585 -1.2 -4.3 hypothetical protein compare
AO353_22500 -1.2 -1.5 hypothetical protein compare
AO353_00750 -1.1 -3.0 GntR family transcriptional regulator compare
AO353_06425 -1.1 -3.2 lipoyl synthase compare
AO353_16195 -1.1 -1.2 DNA mismatch repair protein MutT compare
AO353_21055 -1.1 -3.3 glycosyl hydrolase compare
AO353_08315 -1.1 -4.7 multidrug transporter compare
AO353_04175 -1.1 -3.3 glycerol uptake facilitator GlpF compare
AO353_18715 -1.1 -1.2 histidine kinase compare
AO353_04930 -1.1 -1.8 flavodoxin compare
AO353_02465 -1.1 -1.4 hypothetical protein compare
AO353_26285 -1.1 -1.8 hypothetical protein compare
AO353_12125 -1.1 -4.5 glutaredoxin compare
AO353_29165 -1.1 -2.2 fructose-bisphosphate aldolase compare
AO353_19290 -1.1 -2.5 molybdenum cofactor sulfurase compare
AO353_09895 -1.1 -4.8 phosphate ABC transporter permease compare
AO353_22800 -1.1 -2.0 sulfite reductase compare
AO353_02250 -1.1 -2.3 chorismate synthase compare
AO353_21475 -1.1 -3.8 hypothetical protein compare
AO353_09250 -1.0 -1.4 exodeoxyribonuclease III compare
AO353_06045 -1.0 -4.2 exodeoxyribonuclease V subunit beta compare
AO353_09905 -1.0 -5.4 phosphate-binding protein compare
AO353_06495 -1.0 -2.8 gamma-glutamyl phosphate reductase compare
AO353_19090 -1.0 -1.4 MarR family transcriptional regulator compare
AO353_07505 -1.0 -4.9 dethiobiotin synthetase compare
AO353_12345 -1.0 -1.7 twin-arginine protein translocation system subunit TatC compare
AO353_14990 -1.0 -1.8 hypothetical protein compare
AO353_09900 -1.0 -6.1 phosphate ABC transporter permease compare
AO353_10445 -1.0 -1.2 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_09000 -1.0 -3.1 argininosuccinate lyase compare
AO353_28110 -1.0 -3.2 TetR family transcriptional regulator compare
AO353_02145 -1.0 -3.4 hypothetical protein compare
AO353_06725 -1.0 -1.1 hypothetical protein compare
AO353_08115 -1.0 -3.9 energy transducer TonB compare
AO353_20265 -1.0 -1.9 spore coat protein compare
AO353_08100 -1.0 -2.5 chemotaxis protein CheY compare
AO353_00835 -1.0 -3.7 transporter compare
AO353_09830 -1.0 -5.1 pyridine nucleotide-disulfide oxidoreductase compare
AO353_11455 -1.0 -1.4 hypothetical protein compare
AO353_21520 -0.9 -2.9 hypothetical protein compare
AO353_03590 -0.9 -2.0 crossover junction endodeoxyribonuclease RuvC compare
AO353_12870 -0.9 -7.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_15480 -0.9 -1.3 hypothetical protein compare
AO353_16655 -0.9 -2.6 phage baseplate protein compare
AO353_24405 -0.9 -2.2 ArsR family transcriptional regulator compare
AO353_17305 -0.9 -3.0 TetR family transcriptional regulator compare
AO353_03515 -0.9 -1.3 cold-shock protein compare
AO353_26795 -0.9 -2.6 NAD-dependent deacetylase compare
AO353_19610 -0.9 -2.8 hypothetical protein compare
AO353_27180 -0.9 -2.2 peptidase M48, Ste24p compare
AO353_27925 -0.9 -1.7 hypothetical protein compare
AO353_27675 -0.9 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_11165 -0.9 -4.5 hypothetical protein compare
AO353_27315 -0.9 -3.0 hypothetical protein compare
AO353_06040 -0.9 -2.1 exodeoxyribonuclease V subunit alpha compare
AO353_20335 -0.9 -3.2 3-methylcrotonyl-CoA carboxylase compare
AO353_28860 -0.9 -2.4 hypothetical protein compare
AO353_07270 -0.9 -1.9 transcriptional regulator compare
AO353_11770 -0.9 -1.4 molecular chaperone Hsp33 compare
AO353_23720 -0.9 -2.3 BatB protein compare
AO353_07910 -0.9 -1.8 hypothetical protein compare
AO353_00460 -0.8 -1.7 TetR family transcriptional regulator compare
AO353_08645 -0.8 -2.0 transporter compare
AO353_16025 -0.8 -2.5 hypothetical protein compare
AO353_26165 -0.8 -1.8 hypothetical protein compare
AO353_02525 -0.8 -2.5 molecular chaperone compare
AO353_10780 -0.8 -1.1 DNA-binding protein compare
AO353_27810 -0.8 -3.2 twitching motility protein PilT compare
AO353_23450 -0.8 -1.7 LysR family transcriptional regulator compare
AO353_19530 -0.8 -1.3 quinohemoprotein amine dehydrogenase compare
AO353_18305 -0.8 -2.4 RNA helicase compare
AO353_17410 -0.8 -1.1 arylsulfate sulfotransferase compare
AO353_20170 -0.8 -2.6 trigger factor compare
AO353_02640 -0.8 -1.3 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_14740 -0.8 -2.2 GTP-binding protein compare
AO353_12395 -0.8 -1.8 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_19825 -0.8 -3.7 shikimate dehydrogenase compare
AO353_05130 -0.8 -1.3 anti-anti-sigma factor compare
AO353_27985 -0.8 -1.7 peptidase M14 compare
AO353_13640 -0.8 -2.3 histidine kinase compare
AO353_01595 -0.8 -1.6 Flp pilus assembly protein CpaB compare
AO353_11730 -0.8 -4.3 glutamate--cysteine ligase compare
AO353_09265 -0.8 -1.2 hypothetical protein compare
AO353_09785 -0.8 -1.9 hypothetical protein compare
AO353_13220 -0.8 -3.4 hypothetical protein compare
AO353_08600 -0.8 -2.1 TetR family transcriptional regulator compare
AO353_26865 -0.8 -1.9 transcriptional regulator compare
AO353_02280 -0.8 -0.9 DNA mismatch repair protein MutS compare
AO353_05125 -0.8 -2.4 BolA family transcriptional regulator compare
AO353_18320 -0.8 -2.9 hypothetical protein compare
AO353_13155 -0.8 -2.3 hypothetical protein compare
AO353_15880 -0.8 -4.0 pilus assembly protein PilW compare
AO353_14395 -0.8 -1.9 poly(A) polymerase compare
AO353_12130 -0.8 -2.8 preprotein translocase subunit SecB compare
AO353_01915 -0.8 -1.4 GlcG protein compare
AO353_26115 -0.7 -1.1 hypothetical protein compare
AO353_07770 -0.7 -2.7 AraC family transcriptional regulator compare
AO353_26090 -0.7 -0.8 hypothetical protein compare
AO353_27650 -0.7 -2.2 cell division protein FtsK compare
AO353_29215 -0.7 -1.4 alpha/beta hydrolase compare
AO353_07205 -0.7 -2.8 lipoate--protein ligase compare
AO353_02015 -0.7 -2.9 acetyltransferase compare
AO353_20345 -0.7 -3.2 methylcrotonoyl-CoA carboxylase compare
AO353_24745 -0.7 -1.4 hypothetical protein compare
AO353_00235 -0.7 -1.5 transcriptional regulator compare
AO353_05415 -0.7 -1.6 hypothetical protein compare
AO353_10615 -0.7 -2.0 pilus assembly protein PilZ compare
AO353_23620 -0.7 -1.1 hypothetical protein compare
AO353_13150 -0.7 -4.0 GTPase HflX compare
AO353_21425 -0.7 -1.9 hypothetical protein compare
AO353_08980 -0.7 -1.7 heme biosynthesis operon protein HemX compare
AO353_03115 -0.7 -1.6 TetR family transcriptional regulator compare
AO353_26995 -0.7 -2.3 hypothetical protein compare
AO353_10495 -0.7 -1.7 serine hydroxymethyltransferase compare
AO353_23165 -0.7 -1.9 cupin compare
AO353_10710 -0.7 -2.6 tryptophan synthase subunit beta compare
AO353_17205 -0.7 -1.5 beta-ketoadipyl CoA thiolase compare
AO353_22150 -0.7 -1.4 iron transporter compare
AO353_04220 -0.7 -2.5 chemotaxis protein CheY compare
AO353_12790 -0.7 -0.7 hypothetical protein compare
AO353_01015 -0.7 -1.1 hypothetical protein compare
AO353_26045 -0.7 -0.9 hypothetical protein compare
AO353_10455 -0.7 -1.2 tRNA modification GTPase MnmE compare
AO353_02140 -0.7 -3.6 BolA family transcriptional regulator compare
AO353_25990 -0.7 -2.6 aspartyl beta-hydroxylase compare
AO353_01990 -0.7 -3.2 UDP-N-acetylglucosamine 2-epimerase compare
AO353_01795 -0.7 -1.2 hypothetical protein compare
AO353_24440 -0.7 -1.2 reactive intermediate/imine deaminase compare
AO353_15005 -0.7 -2.5 lysine transporter LysE compare
AO353_00635 -0.7 -1.6 hypothetical protein compare
AO353_08880 -0.7 -1.1 exopolyphosphatase compare
AO353_24885 -0.7 -1.6 Crp/Fnr family transcriptional regulator compare
AO353_20030 -0.6 -2.8 DNA polymerase III compare
AO353_13430 -0.6 -2.6 hypothetical protein compare
AO353_03870 -0.6 -2.2 LysR family transcriptional regulator compare
AO353_25530 -0.6 -2.9 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase compare
AO353_02715 -0.6 -1.9 23S rRNA methyltransferase compare
AO353_03035 -0.6 -1.8 AraC family transcriptional regulator compare
AO353_00600 -0.6 -2.8 cytochrome C oxidase Cbb3 compare
AO353_26485 -0.6 -2.2 hypothetical protein compare
AO353_13610 -0.6 -2.1 precorrin isomerase compare
AO353_07510 -0.6 -3.6 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_18135 -0.6 -1.0 hypothetical protein compare
AO353_21415 -0.6 -2.3 hypothetical protein compare
AO353_25845 -0.6 -1.3 GNAT family acetyltransferase compare
AO353_07075 -0.6 -2.3 elongation factor Tu compare
AO353_26550 -0.6 -0.9 hypothetical protein compare
AO353_18525 -0.6 -2.5 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For stress Thallium(I) acetate in Pseudomonas fluorescens FW300-N2E3

For stress Thallium(I) acetate across organisms