Experiment set2IT008 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Thallium(I) acetate 0.008 mg/ml

Group: stress
Media: LB + Thallium(I) acetate (0.008 mg/ml)
Culturing: pseudo3_N2E3_ML2, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Jayashree on 4/28/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 892 E1,E2

Specific Phenotypes

For 4 genes in this experiment

For stress Thallium(I) acetate in Pseudomonas fluorescens FW300-N2E3

For stress Thallium(I) acetate across organisms

SEED Subsystems

Subsystem #Specific
Choline and Betaine Uptake and Betaine Biosynthesis 2
Biogenesis of cytochrome c oxidases 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
glycine betaine biosynthesis I (Gram-negative bacteria) 2 2 1
choline degradation I 2 2 1
glycine betaine biosynthesis II (Gram-positive bacteria) 2 2 1
choline-O-sulfate degradation 3 3 1
NADPH to cytochrome c oxidase via plastocyanin (thylakoid membrane) 4 1 1
photosynthesis light reactions 4 1 1
superpathway of photosynthetic hydrogen production 6 2 1
oxygenic photosynthesis 17 11 1
ethene biosynthesis V (engineered) 25 19 1
photosynthetic 3-hydroxybutanoate biosynthesis (engineered) 26 20 1
1-butanol autotrophic biosynthesis (engineered) 27 19 1