Experiment set2IT008 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS08570 +1.0 3.3 dehydratase compare
CA265_RS22010 +1.0 1.5 hypothetical protein compare
CA265_RS14960 +1.0 4.1 hypothetical protein compare
CA265_RS00395 +0.8 3.3 hypothetical protein compare
CA265_RS16930 +0.8 3.4 hypothetical protein compare
CA265_RS01220 +0.8 2.5 hypothetical protein compare
CA265_RS00490 +0.8 1.5 hypothetical protein compare
CA265_RS18745 +0.8 1.6 hypothetical protein compare
CA265_RS25180 +0.7 4.4 hypothetical protein compare
CA265_RS05575 +0.7 1.2 hypothetical protein compare
CA265_RS23045 +0.7 1.9 cold-shock protein compare
CA265_RS23545 +0.7 1.1 NADH dehydrogenase subunit D compare
CA265_RS23265 +0.6 2.3 iron-binding protein compare
CA265_RS11055 +0.6 3.2 hypothetical protein compare
CA265_RS07755 +0.6 1.4 hypothetical protein compare
CA265_RS18485 +0.6 2.3 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
CA265_RS25060 +0.6 2.5 hypothetical protein compare
CA265_RS24040 +0.6 1.9 seryl-tRNA synthetase compare
CA265_RS14825 +0.6 1.0 outer membrane protein assembly factor BamD compare
CA265_RS07535 +0.6 1.7 ATPase compare
CA265_RS24195 +0.6 3.4 TetR family transcriptional regulator compare
CA265_RS16515 +0.6 1.1 hypothetical protein compare
CA265_RS06885 +0.6 0.9 hypothetical protein compare
CA265_RS09270 +0.6 1.3 hypothetical protein compare
CA265_RS04040 +0.6 2.0 hypothetical protein compare
CA265_RS02315 +0.6 1.9 single-stranded DNA-binding protein compare
CA265_RS08775 +0.6 0.8 hypothetical protein compare
CA265_RS14170 +0.6 2.1 DNA repair protein compare
CA265_RS00265 +0.6 2.1 RNA polymerase sigma-70 factor compare
CA265_RS12340 +0.6 1.5 hypothetical protein compare
CA265_RS13050 +0.5 2.1 hypothetical protein compare
CA265_RS24920 +0.5 2.2 hypothetical protein compare
CA265_RS22450 +0.5 1.5 GntR family transcriptional regulator compare
CA265_RS25280 +0.5 1.6 four helix bundle protein compare
CA265_RS21360 +0.5 2.3 hypothetical protein compare
CA265_RS12780 +0.5 1.2 hypothetical protein compare
CA265_RS02945 +0.5 2.0 hypothetical protein compare
CA265_RS22435 +0.5 2.8 hypothetical protein compare
CA265_RS19405 +0.5 1.6 transcriptional regulator compare
CA265_RS16325 +0.5 1.0 CsbD family protein compare
CA265_RS10545 +0.5 1.2 hypothetical protein compare
CA265_RS03835 +0.5 1.0 hypothetical protein compare
CA265_RS00360 +0.5 2.7 hypothetical protein compare
CA265_RS11030 +0.5 0.8 twin-arginine translocase TatA/TatE family subunit compare
CA265_RS22165 +0.5 0.8 hypothetical protein compare
CA265_RS14615 +0.5 1.9 hypothetical protein compare
CA265_RS00805 +0.5 1.8 hypothetical protein compare
CA265_RS03695 +0.5 2.8 hypothetical protein compare
CA265_RS24200 +0.5 1.4 fatty acid hydroxylase compare
CA265_RS21605 +0.5 2.3 sensor histidine kinase compare
CA265_RS04325 +0.5 2.4 hypothetical protein compare
CA265_RS22535 +0.5 2.0 hypothetical protein compare
CA265_RS17090 +0.5 1.7 DUF2132 domain-containing protein compare
CA265_RS25360 +0.5 2.0 phosphoribosyltransferase compare
CA265_RS09310 +0.5 3.0 pseudouridylate synthase compare
CA265_RS23675 +0.4 1.1 hypothetical protein compare
CA265_RS19910 +0.4 1.8 GDSL family lipase compare
CA265_RS15035 +0.4 1.7 prevent-host-death protein compare
CA265_RS00025 +0.4 0.6 hypothetical protein compare
CA265_RS06505 +0.4 1.2 hypothetical protein compare
CA265_RS19410 +0.4 1.2 hypothetical protein compare
CA265_RS12800 +0.4 1.5 NAD(P)H-dependent oxidoreductase compare
CA265_RS20380 +0.4 2.9 hemagglutinin compare
CA265_RS20315 +0.4 3.5 hypothetical protein compare
CA265_RS03525 +0.4 1.9 hypothetical protein compare
CA265_RS18780 +0.4 1.2 YicC family protein compare
CA265_RS09650 +0.4 1.4 diaminopimelate decarboxylase compare
CA265_RS11595 +0.4 2.6 haloacid dehalogenase compare
CA265_RS04305 +0.4 1.1 hypothetical protein compare
CA265_RS19660 +0.4 2.2 hypothetical protein compare
CA265_RS18535 +0.4 1.2 four helix bundle protein compare
CA265_RS22920 +0.4 2.1 peptidase M23 compare
CA265_RS19690 +0.4 2.1 hypothetical protein compare
CA265_RS00420 +0.4 1.2 FUSC family protein compare
CA265_RS23460 +0.4 1.3 hypothetical protein compare
CA265_RS00300 +0.4 1.7 damage-inducible protein DinB compare
CA265_RS17570 +0.4 1.2 peptidylprolyl isomerase compare
CA265_RS14570 +0.4 2.4 aminoacyl-tRNA hydrolase compare
CA265_RS23305 +0.4 0.7 hypothetical protein compare
CA265_RS15705 +0.4 2.1 acyl-CoA thioesterase compare
CA265_RS14940 +0.4 1.3 hypothetical protein compare
CA265_RS00465 +0.4 1.2 cupin compare
CA265_RS03815 +0.4 2.0 AraC family transcriptional regulator compare
CA265_RS11775 +0.4 2.1 hypothetical protein compare
CA265_RS19620 +0.4 1.5 hypothetical protein compare
CA265_RS11485 +0.4 2.1 hypothetical protein compare
CA265_RS18225 +0.4 2.4 DNA-binding response regulator compare
CA265_RS19465 +0.4 1.9 protein tyrosine phosphatase compare
CA265_RS20320 +0.4 3.3 hypothetical protein compare
CA265_RS20395 +0.4 0.7 hypothetical protein compare
CA265_RS23100 +0.4 1.3 hypothetical protein compare
CA265_RS23310 +0.4 1.2 polyketide cyclase compare
CA265_RS05215 +0.4 1.5 YfcE family phosphodiesterase compare
CA265_RS02245 +0.4 1.8 hypothetical protein compare
CA265_RS04810 +0.4 2.3 response regulator compare
CA265_RS25160 +0.4 1.7 glycosyl transferase family 2 compare
CA265_RS03070 +0.4 2.5 sec-independent protein translocase TatC compare
CA265_RS18125 +0.4 1.8 gliding motility protein GldL compare
CA265_RS14650 +0.4 1.6 thiol-disulfide oxidoreductase compare
CA265_RS19920 +0.4 2.1 MFS transporter compare
CA265_RS09705 +0.4 0.7 copper oxidase compare
CA265_RS06040 +0.4 0.8 hypothetical protein compare
CA265_RS23940 +0.4 1.7 hypothetical protein compare
CA265_RS05950 +0.4 2.4 CDP-alcohol phosphatidyltransferase compare
CA265_RS11700 +0.4 2.1 hypothetical protein compare
CA265_RS00055 +0.4 2.3 hypothetical protein compare
CA265_RS21740 +0.4 1.3 RNA polymerase sigma factor compare
CA265_RS15815 +0.4 1.2 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein compare
CA265_RS18245 +0.4 1.3 hypothetical protein compare
CA265_RS12330 +0.4 1.3 response regulator compare
CA265_RS04560 +0.4 0.6 hypothetical protein compare
CA265_RS04595 +0.4 2.0 hypothetical protein compare
CA265_RS04640 +0.4 1.7 efflux transporter periplasmic adaptor subunit compare
CA265_RS25020 +0.4 1.4 NADH:ubiquinone oxidoreductase compare
CA265_RS19785 +0.4 2.1 hypothetical protein compare
CA265_RS18790 +0.4 1.3 four helix bundle protein compare
CA265_RS24805 +0.4 1.8 hypothetical protein compare
CA265_RS14545 +0.3 1.5 hypothetical protein compare
CA265_RS20775 +0.3 1.2 hypothetical protein compare
CA265_RS10645 +0.3 1.0 II family cellulose-binding protein compare
CA265_RS07615 +0.3 1.1 hypothetical protein compare
CA265_RS23700 +0.3 1.9 hypothetical protein compare
CA265_RS22915 +0.3 1.4 hypothetical protein compare
CA265_RS17860 +0.3 2.4 hypothetical protein compare
CA265_RS04375 +0.3 1.7 cystathionine beta-synthase compare
CA265_RS01410 +0.3 1.7 hypothetical protein compare
CA265_RS09410 +0.3 2.1 hypothetical protein compare
CA265_RS23725 +0.3 2.1 urease-associated protein compare
CA265_RS11050 +0.3 1.9 hypothetical protein compare
CA265_RS24625 +0.3 2.4 LacI family transcriptional regulator compare
CA265_RS15640 +0.3 2.3 sugar kinase compare
CA265_RS17585 +0.3 2.1 acetyl-CoA acetyltransferase compare
CA265_RS23680 +0.3 2.4 hypothetical protein compare
CA265_RS15780 +0.3 2.2 hypothetical protein compare
CA265_RS21060 +0.3 0.7 hypothetical protein compare
CA265_RS12665 +0.3 0.6 cold-shock protein compare
CA265_RS19105 +0.3 0.9 hypothetical protein compare
CA265_RS23870 +0.3 1.3 hypothetical protein compare
CA265_RS17730 +0.3 2.1 hypothetical protein compare
CA265_RS24370 +0.3 0.9 hypothetical protein compare
CA265_RS11955 +0.3 1.2 Error-prone repair protein ImuA compare
CA265_RS12620 +0.3 2.2 molybdopterin molybdenumtransferase MoeA compare
CA265_RS25400 +0.3 1.6 fatty acid desaturase compare
CA265_RS23415 +0.3 1.7 histidine decarboxylase compare
CA265_RS03120 +0.3 1.4 disulfide bond formation protein DsbA compare
CA265_RS12985 +0.3 0.7 hypothetical protein compare
CA265_RS15230 +0.3 1.5 RNA pseudouridine synthase compare
CA265_RS20695 +0.3 0.5 hypothetical protein compare
CA265_RS20475 +0.3 0.8 hypothetical protein compare
CA265_RS05060 +0.3 1.2 hypothetical protein compare
CA265_RS13540 +0.3 2.0 fatty acid hydroxylase compare
CA265_RS05370 +0.3 1.6 RNA polymerase subunit sigma-70 compare
CA265_RS16160 +0.3 1.5 hypothetical protein compare
CA265_RS24650 +0.3 0.9 beta-phosphoglucomutase compare
CA265_RS21330 +0.3 1.8 TetR family transcriptional regulator compare
CA265_RS25115 +0.3 1.9 hypothetical protein compare
CA265_RS17880 +0.3 2.4 hypothetical protein compare
CA265_RS08965 +0.3 2.0 thioesterase compare
CA265_RS25015 +0.3 1.2 hypothetical protein compare
CA265_RS24840 +0.3 2.0 hypothetical protein compare
CA265_RS01200 +0.3 1.3 hypothetical protein compare
CA265_RS20270 +0.3 1.0 methionine--tRNA ligase compare
CA265_RS02190 +0.3 1.3 hypothetical protein compare
CA265_RS05945 +0.3 0.8 polysaccharide biosynthesis protein GtrA compare
CA265_RS17935 +0.3 1.5 hypothetical protein compare
CA265_RS21600 +0.3 1.5 hypothetical protein compare
CA265_RS13735 +0.3 1.0 AsnC family transcriptional regulator compare
CA265_RS03065 +0.3 1.6 hypothetical protein compare
CA265_RS09320 +0.3 1.2 hypothetical protein compare
CA265_RS05325 +0.3 1.3 AraC family transcriptional regulator compare
CA265_RS24575 +0.3 1.6 hypothetical protein compare
CA265_RS17390 +0.3 1.4 PadR family transcriptional regulator compare
CA265_RS23980 +0.3 2.0 patatin compare
CA265_RS14175 +0.3 1.6 hypothetical protein compare
CA265_RS18035 +0.3 0.9 hypothetical protein compare
CA265_RS21515 +0.3 1.7 alanine dehydrogenase compare
CA265_RS25410 +0.3 1.9 gluconate kinase compare
CA265_RS07385 +0.3 1.4 thioesterase compare
CA265_RS18805 +0.3 0.5 hypothetical protein compare
CA265_RS02180 +0.3 2.1 hypothetical protein compare
CA265_RS22990 +0.3 2.0 hypothetical protein compare
CA265_RS18975 +0.3 1.5 glycine cleavage system protein H compare
CA265_RS07230 +0.3 0.6 hypothetical protein compare
CA265_RS18870 +0.3 0.9 hypothetical protein compare
CA265_RS20785 +0.3 0.7 hypothetical protein compare
CA265_RS03910 +0.3 1.7 hypothetical protein compare
CA265_RS21700 +0.3 1.4 two-component sensor histidine kinase compare
CA265_RS07075 +0.3 1.9 N-acetylmuramoyl-L-alanine amidase compare
CA265_RS14505 +0.3 2.1 hypothetical protein compare
CA265_RS19595 +0.3 1.3 GxxExxY protein compare
CA265_RS13575 +0.3 1.3 hypothetical protein compare
CA265_RS12850 +0.3 1.3 3-oxoacyl-ACP synthase compare
CA265_RS00410 +0.3 2.0 hypothetical protein compare
CA265_RS15405 +0.3 1.9 ATPase compare
CA265_RS18465 +0.3 1.6 RNA-splicing ligase RtcB compare
CA265_RS01100 +0.3 1.8 transcriptional regulator compare
CA265_RS03765 +0.3 1.2 hypothetical protein compare
CA265_RS04650 +0.3 2.1 two-component sensor histidine kinase compare
CA265_RS07445 +0.3 2.0 MarR family transcriptional regulator compare
CA265_RS15565 +0.3 1.7 beta-aspartyl-peptidase compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in r2a experiments