Experiment set2IT008 for Bifidobacterium breve UCC2003
CDM1 without Arginine
Group: nutrient dropoutMedia: CDM1 + no Arginine, pH=7
Culturing: Bifido_ML2, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Anthony Shiver on 12/9/2019
Growth plate: CDM1_nutrientdrop A8
Specific Phenotypes
For 1 genes in this experiment
For nutrient dropout no Arginine in Bifidobacterium breve UCC2003
For nutrient dropout no Arginine across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Arginine Biosynthesis extended | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Urea cycle and metabolism of amino groups
- Alanine and aspartate metabolism
- Arginine and proline metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| nitric oxide biosynthesis II (mammals) | 3 | 2 | 1 |
| canavanine biosynthesis | 4 | 2 | 1 |
| urea cycle | 5 | 3 | 1 |
| L-arginine biosynthesis I (via L-ornithine) | 9 | 8 | 1 |
| L-arginine biosynthesis III (via N-acetyl-L-citrulline) | 9 | 7 | 1 |
| L-arginine biosynthesis IV (archaea) | 9 | 4 | 1 |
| L-arginine biosynthesis II (acetyl cycle) | 10 | 10 | 1 |
| superpathway of L-citrulline metabolism | 12 | 7 | 1 |
| superpathway of arginine and polyamine biosynthesis | 17 | 8 | 1 |