Experiment set2IT007 for Dyella japonica UNC79MFTsu3.2

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS09635 -7.7 -5.3 phosphoglycerate dehydrogenase compare
ABZR86_RS10475 -7.2 -5.0 shikimate kinase compare
ABZR86_RS15980 -6.4 -4.4 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS20980 -6.2 -4.2 hypothetical protein compare
ABZR86_RS06710 -6.1 -5.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS11105 -6.0 -5.6 Fructokinase (EC 2.7.1.4) (from data) conserved
ABZR86_RS10425 -6.0 -4.1 pyrroline-5-carboxylate reductase compare
ABZR86_RS06700 -5.9 -5.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS08710 -5.8 -8.9 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS12070 -5.7 -8.4 anthranilate phosphoribosyltransferase compare
ABZR86_RS14985 -5.6 -10.7 shikimate dehydrogenase compare
ABZR86_RS15940 -5.6 -10.0 ketol-acid reductoisomerase compare
ABZR86_RS06705 -5.6 -5.4 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS16795 -5.5 -19.4 glutamate synthase large subunit compare
ABZR86_RS19025 -5.5 -3.8 homoserine O-succinyltransferase compare
ABZR86_RS06720 -5.5 -5.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS15960 -5.5 -10.4 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS15935 -5.4 -14.4 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS14690 -5.3 -7.3 phosphogluconate dehydratase compare
ABZR86_RS13515 -5.3 -5.2 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS02450 -5.2 -6.2 hypothetical protein compare
ABZR86_RS02225 -5.2 -7.1 prephenate dehydratase compare
ABZR86_RS15950 -5.2 -7.1 3-isopropylmalate dehydrogenase compare
ABZR86_RS16800 -5.1 -13.8 FAD-dependent oxidoreductase compare
ABZR86_RS12065 -5.1 -7.8 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS08730 -5.1 -13.2 N-acetylornithine carbamoyltransferase compare
ABZR86_RS15975 -5.1 -13.5 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS08250 -5.1 -3.5 phosphate signaling complex protein PhoU compare
ABZR86_RS15945 -5.0 -5.9 dihydroxy-acid dehydratase compare
ABZR86_RS02285 -5.0 -7.6 DUF1643 domain-containing protein compare
ABZR86_RS08010 -5.0 -6.8 phosphoribosylanthranilate isomerase compare
ABZR86_RS02220 -4.9 -18.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS06725 -4.8 -8.0 histidinol-phosphate transaminase compare
ABZR86_RS18675 -4.8 -4.7 phosphoglycerate kinase compare
ABZR86_RS08000 -4.8 -15.3 tryptophan synthase subunit beta compare
ABZR86_RS02815 -4.8 -18.7 asparagine synthase B compare
ABZR86_RS06715 -4.8 -8.5 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS06730 -4.8 -9.3 histidinol dehydrogenase compare
ABZR86_RS00830 -4.7 -11.7 glucose-6-phosphate isomerase compare
ABZR86_RS11555 -4.7 -14.1 phosphoenolpyruvate carboxylase compare
ABZR86_RS21480 -4.7 -8.3 arginase family protein compare
ABZR86_RS08715 -4.5 -12.6 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS08040 -4.5 -8.0 chorismate synthase compare
ABZR86_RS02230 -4.5 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS15305 -4.5 -7.4 MbcA/ParS/Xre antitoxin family protein compare
ABZR86_RS08340 -4.4 -6.7 adenylosuccinate synthase compare
ABZR86_RS14100 -4.4 -9.4 DNA adenine methylase compare
ABZR86_RS11570 -4.4 -9.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS05905 -4.4 -7.2 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS10215 -4.4 -8.2 inositol monophosphatase family protein compare
ABZR86_RS05885 -4.4 -11.3 LysR substrate-binding domain-containing protein compare
ABZR86_RS08695 -4.3 -11.7 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS12180 -4.3 -17.1 anthranilate synthase component I compare
ABZR86_RS08945 -4.3 -12.8 C40 family peptidase compare
ABZR86_RS15965 -4.3 -9.3 branched-chain amino acid transaminase compare
ABZR86_RS14700 -4.2 -5.7 glucose-6-phosphate dehydrogenase compare
ABZR86_RS19560 -4.1 -6.7 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS06260 -4.1 -5.6 MBL fold metallo-hydrolase compare
ABZR86_RS20775 -4.1 -4.8 TetR/AcrR family transcriptional regulator compare
ABZR86_RS08700 -4.1 -6.8 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS19800 -4.1 -12.4 RNase adapter RapZ compare
ABZR86_RS11100 -4.0 -12.5 fructose porter FruP (from data) conserved
ABZR86_RS21575 -4.0 -10.0 [protein-PII] uridylyltransferase compare
ABZR86_RS06775 -4.0 -18.2 amidophosphoribosyltransferase compare
ABZR86_RS19860 -4.0 -12.0 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS07995 -3.9 -7.7 tryptophan synthase subunit alpha compare
ABZR86_RS17085 -3.9 -6.2 type II 3-dehydroquinate dehydratase compare
ABZR86_RS15970 -3.8 -7.4 2-isopropylmalate synthase compare
ABZR86_RS05875 -3.8 -5.2 cysteine synthase A compare
ABZR86_RS15315 -3.8 -10.7 phenylalanine 4-monooxygenase compare
ABZR86_RS06030 -3.8 -1.7 transcription termination factor NusA compare
ABZR86_RS05900 -3.8 -11.6 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS21020 -3.8 -9.9 ATP-binding protein compare
ABZR86_RS09075 -3.8 -1.7 NrsF family protein compare
ABZR86_RS11095 -3.7 -9.5 LacI family DNA-binding transcriptional regulator compare
ABZR86_RS12435 -3.7 -11.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS05895 -3.7 -12.0 phosphoadenylyl-sulfate reductase compare
ABZR86_RS15460 -3.7 -2.5 type I glutamate--ammonia ligase compare
ABZR86_RS08705 -3.7 -9.9 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS19030 -3.7 -7.9 cystathionine gamma-synthase compare
ABZR86_RS05890 -3.6 -14.7 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS10480 -3.6 -3.6 3-dehydroquinate synthase compare
ABZR86_RS08680 -3.6 -11.0 glutamate-5-semialdehyde dehydrogenase compare
ABZR86_RS10715 -3.5 -16.0 serine hydroxymethyltransferase compare
ABZR86_RS07585 -3.4 -10.7 homocysteine S-methyltransferase family protein compare
ABZR86_RS09885 -3.3 -2.2 trypsin-like peptidase domain-containing protein compare
ABZR86_RS12215 -3.3 -3.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS19865 -3.3 -2.2 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS08350 -3.2 -9.2 protease modulator HflC compare
ABZR86_RS13850 -3.2 -6.1 phosphoribosylamine--glycine ligase compare
ABZR86_RS06735 -3.2 -5.2 ATP phosphoribosyltransferase compare
ABZR86_RS13055 -3.2 -10.5 glucokinase compare
ABZR86_RS15955 -3.1 -6.8 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS02890 -3.1 -8.1 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS18615 -3.1 -3.0 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS18355 -3.1 -1.9 PepSY domain-containing protein compare
ABZR86_RS21725 -3.0 -15.7 YhdP family protein compare
ABZR86_RS06400 -3.0 -6.8 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR86_RS08905 -3.0 -8.7 carbonate dehydratase compare
ABZR86_RS08685 -3.0 -5.4 glutamate 5-kinase compare
ABZR86_RS08305 -3.0 -16.7 aminomethyl-transferring glycine dehydrogenase compare
ABZR86_RS07590 -3.0 -17.1 methionine synthase compare
ABZR86_RS19235 -3.0 -3.4 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS06630 -2.9 -3.8 phosphopyruvate hydratase compare
ABZR86_RS11995 -2.8 -7.1 5-formyltetrahydrofolate cyclo-ligase compare
ABZR86_RS02880 -2.8 -12.2 sulfate ABC transporter substrate-binding protein compare
ABZR86_RS18780 -2.8 -2.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS02885 -2.8 -12.1 sulfate ABC transporter permease subunit CysT compare
ABZR86_RS05550 -2.7 -3.7 lipopolysaccharide assembly protein LapB compare
ABZR86_RS12885 -2.7 -1.9 magnesium-translocating P-type ATPase compare
ABZR86_RS18875 -2.7 -9.2 glycine cleavage system aminomethyltransferase GcvT compare
ABZR86_RS12780 -2.7 -5.4 pteridine reductase compare
ABZR86_RS10205 -2.6 -6.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS12005 -2.5 -1.7 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS07280 -2.5 -4.3 methyltransferase domain-containing protein compare
ABZR86_RS11870 -2.5 -11.9 phospholipid-binding protein MlaC compare
ABZR86_RS18880 -2.4 -6.0 glycine cleavage system protein GcvH compare
ABZR86_RS11485 -2.4 -6.0 hypothetical protein compare
ABZR86_RS07885 -2.4 -6.5 cation diffusion facilitator family transporter compare
ABZR86_RS06355 -2.4 -5.9 folate-binding protein YgfZ compare
ABZR86_RS06740 -2.4 -2.6 YerC/YecD family TrpR-related protein compare
ABZR86_RS16160 -2.3 -5.2 hypothetical protein compare
ABZR86_RS12605 -2.3 -2.9 thioredoxin TrxA compare
ABZR86_RS07180 -2.3 -5.6 RNA polymerase sigma factor RpoE compare
ABZR86_RS05880 -2.3 -6.8 siroheme synthase CysG compare
ABZR86_RS11860 -2.3 -12.0 VacJ family lipoprotein compare
ABZR86_RS09145 -2.3 -3.6 hypothetical protein compare
ABZR86_RS15640 -2.3 -1.5 orotate phosphoribosyltransferase compare
ABZR86_RS10710 -2.3 -2.6 transcriptional regulator NrdR compare
ABZR86_RS16040 -2.3 -1.4 molybdopterin-dependent oxidoreductase compare
ABZR86_RS19795 -2.3 -5.4 PTS sugar transporter subunit IIA compare
ABZR86_RS06000 -2.2 -6.7 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS02895 -2.2 -5.8 ABC transporter ATP-binding protein compare
ABZR86_RS00685 -2.2 -1.9 carbon storage regulator CsrA compare
ABZR86_RS08015 -2.2 -1.8 tRNA pseudouridine(38-40) synthase TruA compare
ABZR86_RS18360 -2.1 -10.1 response regulator transcription factor compare
ABZR86_RS05995 -2.1 -13.5 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS18815 -2.1 -4.0 FAD-binding protein compare
ABZR86_RS20835 -2.1 -5.3 TetR family transcriptional regulator C-terminal domain-containing protein compare
ABZR86_RS02200 -2.1 -13.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR86_RS02305 -2.1 -1.5 hypothetical protein compare
ABZR86_RS21280 -2.0 -4.9 hypothetical protein compare
ABZR86_RS11110 -2.0 -6.9 AGE family epimerase/isomerase conserved
ABZR86_RS19805 -2.0 -5.6 HPr(Ser) kinase/phosphatase compare
ABZR86_RS15330 -2.0 -8.6 TetR/AcrR family transcriptional regulator compare
ABZR86_RS09430 -2.0 -4.6 non-heme iron oxygenase ferredoxin subunit compare
ABZR86_RS12835 -1.9 -4.5 DedA family protein compare
ABZR86_RS18450 -1.9 -1.8 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS18830 -1.9 -6.8 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS18465 -1.9 -5.9 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR86_RS11875 -1.9 -9.5 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR86_RS15985 -1.9 -5.7 homoserine dehydrogenase compare
ABZR86_RS08355 -1.9 -4.9 FtsH protease activity modulator HflK compare
ABZR86_RS09935 -1.9 -2.4 DUF4105 domain-containing protein compare
ABZR86_RS12220 -1.8 -2.7 Mpo1-like protein compare
ABZR86_RS11880 -1.8 -4.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR86_RS02185 -1.8 -8.0 tRNA 2-thiouridine(34) synthase MnmA compare
ABZR86_RS18225 -1.7 -4.5 helix-turn-helix transcriptional regulator compare
ABZR86_RS21435 -1.7 -5.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABZR86_RS10840 -1.7 -2.2 Holliday junction branch migration protein RuvA compare
ABZR86_RS18480 -1.7 -13.7 homogentisate 1,2-dioxygenase compare
ABZR86_RS12410 -1.7 -2.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS09630 -1.7 -7.6 FAD-binding oxidoreductase compare
ABZR86_RS21300 -1.7 -8.6 SCO family protein compare
ABZR86_RS02500 -1.7 -2.1 hypothetical protein compare
ABZR86_RS13370 -1.7 -8.3 twin-arginine translocase subunit TatC compare
ABZR86_RS13780 -1.7 -6.8 hypothetical protein compare
ABZR86_RS10830 -1.6 -2.6 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS18960 -1.6 -6.2 TetR/AcrR family transcriptional regulator compare
ABZR86_RS11885 -1.6 -4.0 ATP-binding cassette domain-containing protein compare
ABZR86_RS18705 -1.6 -1.7 pyridoxal-phosphate dependent enzyme compare
ABZR86_RS15020 -1.6 -1.7 DUF484 family protein compare
ABZR86_RS17075 -1.5 -3.7 four helix bundle protein compare
ABZR86_RS02395 -1.5 -2.1 hypothetical protein compare
ABZR86_RS17095 -1.5 -5.8 protein-disulfide reductase DsbD compare
ABZR86_RS09870 -1.5 -6.9 cytochrome c1 compare
ABZR86_RS12900 -1.5 -8.3 heme A synthase compare
ABZR86_RS02750 -1.5 -9.2 cytochrome c compare
ABZR86_RS05700 -1.4 -3.4 SsrA-binding protein SmpB compare
ABZR86_RS08130 -1.4 -6.6 dCTP deaminase compare
ABZR86_RS16770 -1.4 -1.6 phage holin family protein compare
ABZR86_RS05860 -1.4 -2.2 adenylosuccinate lyase compare
ABZR86_RS09840 -1.4 -1.1 Trm112 family protein compare
ABZR86_RS14705 -1.3 -4.8 GntR family transcriptional regulator compare
ABZR86_RS12930 -1.3 -7.4 cytochrome c oxidase subunit II compare
ABZR86_RS06590 -1.3 -1.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS20150 -1.3 -0.9 PilZ domain-containing protein compare
ABZR86_RS19905 -1.3 -4.3 DUF47 domain-containing protein compare
ABZR86_RS17485 -1.3 -8.9 septal ring lytic transglycosylase RlpA family protein compare
ABZR86_RS17150 -1.3 -7.3 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
ABZR86_RS13880 -1.3 -2.0 peptide deformylase compare
ABZR86_RS13225 -1.3 -3.1 HAD family hydrolase compare
ABZR86_RS09880 -1.2 -4.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR86_RS13380 -1.2 -1.2 Sec-independent protein translocase subunit TatA compare
ABZR86_RS19225 -1.2 -3.4 site-specific tyrosine recombinase XerD compare
ABZR86_RS12925 -1.2 -7.8 cytochrome c oxidase subunit I compare
ABZR86_RS18430 -1.2 -3.5 type II toxin-antitoxin system HigA family antitoxin compare
ABZR86_RS12910 -1.2 -7.4 SURF1 family protein compare
ABZR86_RS13355 -1.2 -8.2 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS09875 -1.2 -6.9 cytochrome bc complex cytochrome b subunit compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source D-Fructose in Dyella japonica UNC79MFTsu3.2

For carbon source D-Fructose across organisms