Experiment set2IT006 for Pseudomonas fluorescens FW300-N2E2

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D-Galactose carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
Pf6N2E2_5978 -3.3 -10.1 Hexuronate transporter conserved
Pf6N2E2_5976 -3.3 -6.9 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) conserved
Pf6N2E2_5977 -3.0 -7.0 Galactonate dehydratase (EC 4.2.1.6) conserved
Pf6N2E2_5966 -2.9 -6.4 L-arabinolactonase (EC 3.1.1.15) (from data) conserved
Pf6N2E2_4485 -2.7 -8.8 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf6N2E2_5970 -2.4 -10.0 ABC transporter for D-galactose/L-arabinose, permease component (from data) conserved
Pf6N2E2_3613 -2.1 -6.7 GTP-binding protein HflX compare
Pf6N2E2_5968 -2.0 -9.8 ABC transporter for D-galactose/L-arabinose, substrate-binding component (from data) conserved
Pf6N2E2_4809 -2.0 -10.6 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_2727 -1.9 -7.1 Ribonuclease D (EC 3.1.26.3) compare
Pf6N2E2_5025 -1.9 -13.7 Sensor histidine kinase compare
Pf6N2E2_4581 -1.8 -6.8 FIG015547: peptidase, M16 family compare
Pf6N2E2_5969 -1.7 -10.9 ABC transporter for D-galactose/L-arabinose, ATPase component (from data) conserved
Pf6N2E2_3093 -1.7 -5.0 Transcriptional regulator, TetR family compare
Pf6N2E2_4580 -1.5 -6.6 FIG015287: Zinc protease compare
Pf6N2E2_4480 -1.4 -8.1 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
Pf6N2E2_755 -1.4 -7.9 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide compare
Pf6N2E2_4233 -1.0 -7.8 sulfatase domain protein, putative compare
Pf6N2E2_1915 +1.1 5.7 Dienelactone hydrolase and related enzymes compare
Pf6N2E2_4374 +1.1 7.2 Phosphomannomutase (EC 5.4.2.8) / Phosphoglucomutase (EC 5.4.2.2) compare
Pf6N2E2_5388 +1.1 8.5 GDP-mannose 6-dehydrogenase (EC 1.1.1.132) compare
Pf6N2E2_691 +1.1 5.2 D-galactarate permease compare
Pf6N2E2_2684 +1.2 7.6 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) compare
Pf6N2E2_3489 +1.2 9.3 FIG00956297: hypothetical protein compare
Pf6N2E2_4302 +1.2 5.1 Uncharacterized protein ImpH/VasB compare
Pf6N2E2_3157 +1.3 6.1 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare
Pf6N2E2_2446 +1.3 9.9 Aspartate aminotransferase (EC 2.6.1.1) conserved
Pf6N2E2_4822 +1.3 8.0 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf6N2E2_2599 +1.3 6.4 Flagellar biosynthesis protein FliS compare
Pf6N2E2_3158 +1.3 8.9 tRNA (5-methoxyuridine) 34 synthase compare
Pf6N2E2_2192 +1.4 10.1 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Pf6N2E2_3619 +1.4 5.9 NAD(P)HX epimerase / NAD(P)HX dehydratase compare
Pf6N2E2_4437 +1.4 5.8 Twin-arginine translocation protein TatB compare
Pf6N2E2_2167 +1.4 7.8 hypothetical protein compare
Pf6N2E2_2840 +1.5 9.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2837 +1.5 6.9 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12) compare
Pf6N2E2_4617 +1.5 12.3 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf6N2E2_5435 +1.6 7.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1605 +1.6 8.5 Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) compare
Pf6N2E2_1386 +1.7 7.6 amino acid ABC transporter, periplasmic substrate-binding protein compare
Pf6N2E2_3903 +1.7 10.0 Ribosomal protein S6 glutaminyl transferase compare
Pf6N2E2_3180 +1.7 8.9 Type IV pilus biogenesis protein PilF compare
Pf6N2E2_2194 +1.7 11.3 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) compare
Pf6N2E2_5387 +1.8 12.3 Alginate biosynthesis protein Alg8 compare
Pf6N2E2_3560 +1.8 8.8 membrane protein, putative compare
Pf6N2E2_5365 +1.8 7.2 Heavy metal sensor histidine kinase compare
Pf6N2E2_5386 +1.8 9.8 Alginate biosynthesis protein Alg44 compare
Pf6N2E2_4821 +1.9 9.1 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Pf6N2E2_4357 +1.9 15.5 Nucleoside-diphosphate-sugar epimerases compare
Pf6N2E2_2533 +1.9 11.9 Rhodanese domain protein UPF0176 compare
Pf6N2E2_4486 +1.9 8.0 Glycine cleavage system H protein compare
Pf6N2E2_2524 +1.9 7.8 S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase compare
Pf6N2E2_2193 +2.0 7.6 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_3517 +2.0 7.2 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf6N2E2_2166 +2.0 12.7 protein of unknown function DUF6, transmembrane compare
Pf6N2E2_2466 +2.0 10.9 Universal stress protein family compare
Pf6N2E2_2133 +2.1 11.5 Putative sulfate permease compare
Pf6N2E2_2888 +2.2 12.7 Glucose-selective porin OprB compare
Pf6N2E2_806 +2.2 12.9 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_5448 +2.3 9.0 hypothetical protein compare
Pf6N2E2_2044 +2.4 19.0 Histidine kinase/response regulator hybrid protein compare
Pf6N2E2_4097 +2.4 17.9 FIG00953365: hypothetical protein compare
Pf6N2E2_692 +2.4 8.9 Glucarate dehydratase (EC 4.2.1.40) compare
Pf6N2E2_2699 +2.5 9.6 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_2886 +2.6 19.0 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_529 +2.6 13.2 FIG00954439: hypothetical protein compare
Pf6N2E2_694 +2.7 14.6 Outer membrane protein (porin) compare
Pf6N2E2_4775 +2.8 11.0 Coenzyme PQQ synthesis protein B compare
Pf6N2E2_1916 +2.9 6.6 Transcriptional regulator, LysR family compare
Pf6N2E2_608 +3.2 16.3 Transcriptional regulator of the arabinose operon in Shewanella, GntR family compare
Pf6N2E2_2470 +3.3 19.8 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_4774 +3.3 16.6 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) compare
Pf6N2E2_4772 +3.7 21.3 Coenzyme PQQ synthesis protein E compare
Pf6N2E2_4980 +4.4 7.1 hypothetical protein compare


Specific phenotypes for carbon source D-Galactose across organisms