Experiment set2IT006 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Galactose carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3060 -6.8 -4.6 Outer membrane protein H precursor compare
Pf6N2E2_4597 -6.0 -4.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5006 -5.6 -6.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_71 -5.3 -5.1 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3842 -5.2 -5.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4596 -5.0 -9.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_77 -5.0 -4.8 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4825 -4.9 -8.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3285 -4.9 -4.8 Rod shape-determining protein MreD compare
Pf6N2E2_4826 -4.8 -7.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3839 -4.7 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4047 -4.6 -4.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_5175 -4.6 -13.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_5780 -4.6 -7.7 Periplasmic protease compare
Pf6N2E2_3783 -4.5 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4077 -4.5 -2.9 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2753 -4.4 -3.1 HtrA protease/chaperone protein compare
Pf6N2E2_1381 -4.4 -8.4 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_5176 -4.4 -9.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_5177 -4.4 -11.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_5014 -4.3 -1.7 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2506 -4.2 -14.3 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_64 -4.2 -3.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4048 -4.0 -8.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3782 -3.9 -5.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2022 -3.9 -7.5 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_3752 -3.9 -19.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3751 -3.8 -11.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2752 -3.8 -8.9 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4611 -3.8 -3.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5524 -3.7 -14.5 Outer membrane porin, OprD family compare
Pf6N2E2_5720 -3.7 -12.7 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_3252 -3.7 -8.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3663 -3.7 -5.6 Glycosyl transferase compare
Pf6N2E2_66 -3.6 -9.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3841 -3.6 -6.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3271 -3.5 -1.7 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3349 -3.5 -4.1 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3630 -3.5 -7.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3610 -3.4 -4.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3942 -3.4 -12.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_2438 -3.4 -1.8 hypothetical protein compare
Pf6N2E2_3661 -3.4 -5.6 hypothetical protein compare
Pf6N2E2_3062 -3.4 -5.5 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5978 -3.3 -10.1 Hexuronate transporter conserved
Pf6N2E2_3346 -3.3 -6.1 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_1402 -3.3 -4.7 hypothetical protein compare
Pf6N2E2_2756 -3.3 -8.1 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_2514 -3.3 -4.5 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_5160 -3.3 -1.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5976 -3.3 -6.9 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) conserved
Pf6N2E2_2261 -3.2 -5.7 VacJ-like lipoprotein precursor compare
Pf6N2E2_4564 -3.2 -7.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_2509 -3.2 -3.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_6082 -3.2 -5.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5156 -3.1 -2.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_658 -3.1 -12.1 sensor histidine kinase compare
Pf6N2E2_3253 -3.1 -6.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2507 -3.1 -6.3 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_5255 -3.0 -10.2 Outer membrane stress sensor protease DegS compare
Pf6N2E2_5977 -3.0 -7.0 Galactonate dehydratase (EC 4.2.1.6) conserved
Pf6N2E2_3257 -2.9 -4.0 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3658 -2.9 -8.6 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5966 -2.9 -6.4 L-arabinolactonase (EC 3.1.1.15) (from data) conserved
Pf6N2E2_4638 -2.8 -3.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_1400 -2.8 -7.9 Sensory box histidine kinase/response regulator compare
Pf6N2E2_5316 -2.8 -2.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3258 -2.8 -3.8 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_1932 -2.7 -7.2 Transcriptional regulator, IclR family compare
Pf6N2E2_5609 -2.7 -5.7 DNA-binding response regulator ColR compare
Pf6N2E2_4485 -2.7 -8.8 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf6N2E2_3659 -2.6 -5.1 Protein fixF compare
Pf6N2E2_5150 -2.6 -6.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5328 -2.5 -4.4 FIG00958649: hypothetical protein compare
Pf6N2E2_3461 -2.5 -1.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5579 -2.5 -7.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_2674 -2.5 -1.6 FIG00953856: hypothetical protein compare
Pf6N2E2_4362 -2.5 -4.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5970 -2.4 -10.0 ABC transporter for D-galactose/L-arabinose, permease component (from data) conserved
Pf6N2E2_5610 -2.4 -6.6 two-component system sensor protein compare
Pf6N2E2_5252 -2.4 -2.1 FIG00956396: hypothetical protein compare
Pf6N2E2_3940 -2.4 -9.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4556 -2.3 -4.7 FIG00953078: hypothetical protein compare
Pf6N2E2_6140 -2.3 -1.3 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5183 -2.3 -13.0 Paraquat-inducible protein B compare
Pf6N2E2_2277 -2.3 -3.1 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2508 -2.3 -3.1 hypothetical protein compare
Pf6N2E2_3460 -2.3 -2.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5182 -2.2 -6.3 Paraquat-inducible protein A compare
Pf6N2E2_819 -2.2 -1.9 Response regulator compare
Pf6N2E2_2281 -2.2 -2.2 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_6057 -2.2 -3.0 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_3835 -2.1 -3.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5899 -2.1 -7.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4479 -2.1 -3.2 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_3941 -2.1 -3.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5727 -2.1 -6.0 FIG00955360: hypothetical protein compare
Pf6N2E2_3260 -2.1 -5.1 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3613 -2.1 -6.7 GTP-binding protein HflX compare
Pf6N2E2_5968 -2.0 -9.8 ABC transporter for D-galactose/L-arabinose, substrate-binding component (from data) conserved
Pf6N2E2_5975 -2.0 -4.3 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) compare
Pf6N2E2_4416 -2.0 -2.5 Tyrosine recombinase XerC compare
Pf6N2E2_6059 -2.0 -4.7 FIG008443: hypothetical protein compare
Pf6N2E2_4809 -2.0 -10.6 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_5181 -2.0 -9.4 Paraquat-inducible protein A compare
Pf6N2E2_2074 -1.9 -2.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3833 -1.9 -3.8 hypothetical protein compare
Pf6N2E2_6058 -1.9 -4.3 FIG139976: hypothetical protein compare
Pf6N2E2_3248 -1.9 -3.6 Probable transmembrane protein compare
Pf6N2E2_180 -1.9 -4.3 Transcriptional regulator, MerR family compare
Pf6N2E2_5766 -1.9 -2.0 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_1056 -1.9 -0.9 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5919 -1.9 -2.2 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_2727 -1.9 -7.1 Ribonuclease D (EC 3.1.26.3) compare
Pf6N2E2_5025 -1.9 -13.7 Sensor histidine kinase compare
Pf6N2E2_4838 -1.9 -7.6 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_282 -1.8 -2.1 GNAT family acetyltransferase YjcF compare
Pf6N2E2_6100 -1.8 -2.3 tRNA-Val-TAC compare
Pf6N2E2_5894 -1.8 -7.2 Putative threonine efflux protein compare
Pf6N2E2_5219 -1.8 -6.3 FIG140336: TPR domain protein compare
Pf6N2E2_4581 -1.8 -6.8 FIG015547: peptidase, M16 family compare
Pf6N2E2_4810 -1.8 -6.8 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_5553 -1.7 -5.5 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_5969 -1.7 -10.9 ABC transporter for D-galactose/L-arabinose, ATPase component (from data) conserved
Pf6N2E2_3664 -1.7 -6.4 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_75 -1.7 -4.3 Colicin V production protein compare
Pf6N2E2_5967 -1.7 -2.9 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_3093 -1.7 -5.0 Transcriptional regulator, TetR family compare
Pf6N2E2_3834 -1.7 -4.9 Lipoprotein NlpD compare
Pf6N2E2_4206 -1.7 -1.3 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_773 -1.7 -6.7 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf6N2E2_2175 -1.6 -4.2 Transcriptional regulator, RpiR family compare
Pf6N2E2_3984 -1.6 -7.4 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_2178 -1.6 -5.8 FIG00960144: hypothetical protein compare
Pf6N2E2_2971 -1.6 -8.9 AmpG permease compare
Pf6N2E2_4453 -1.6 -10.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_4478 -1.6 -4.8 FIG019278: hypothetical protein compare
Pf6N2E2_5943 -1.6 -1.3 hypothetical protein compare
Pf6N2E2_4759 -1.6 -10.7 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_5001 -1.5 -2.2 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4580 -1.5 -6.6 FIG015287: Zinc protease compare
Pf6N2E2_2510 -1.5 -1.9 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4584 -1.5 -3.5 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2675 -1.5 -1.2 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5261 -1.5 -1.1 FIG00956983: hypothetical protein compare
Pf6N2E2_464 -1.4 -2.0 Sensory histidine kinase QseC compare
Pf6N2E2_3170 -1.4 -3.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4480 -1.4 -8.1 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
Pf6N2E2_2200 -1.4 -1.4 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_755 -1.4 -7.9 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide compare
Pf6N2E2_3037 -1.4 -8.3 RNA polymerase sigma factor RpoS compare
Pf6N2E2_3617 -1.4 -3.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2487 -1.4 -1.2 FIG00956090: hypothetical protein compare
Pf6N2E2_1441 -1.4 -2.2 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_613 -1.4 -1.5 lipoprotein, putative compare
Pf6N2E2_5704 -1.3 -4.0 Transcriptional regulatory protein PhoP compare
Pf6N2E2_2124 -1.3 -1.1 Mg(2+) transport ATPase protein C compare
Pf6N2E2_504 -1.3 -2.4 DNA-binding response regulator compare
Pf6N2E2_4052 -1.3 -1.4 FIG00955481: hypothetical protein compare
Pf6N2E2_5874 -1.3 -9.4 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins compare
Pf6N2E2_4009 -1.3 -4.8 GGDEF domain protein compare
Pf6N2E2_4352 -1.3 -2.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_1315 -1.3 -1.5 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_5527 -1.3 -2.4 Cold shock protein CspC compare
Pf6N2E2_733 -1.3 -2.8 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_5523 -1.3 -3.9 Small-conductance mechanosensitive channel compare
Pf6N2E2_5819 -1.2 -3.9 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p compare
Pf6N2E2_2073 -1.2 -3.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5965 -1.2 -2.7 transcriptional regulator compare
Pf6N2E2_2852 -1.2 -7.0 GGDEF domain/EAL domain protein compare
Pf6N2E2_2746 -1.2 -1.4 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_1298 -1.2 -2.5 Xanthine transporter,putative compare
Pf6N2E2_746 -1.2 -1.2 FIG00958097: hypothetical protein compare
Pf6N2E2_3284 -1.2 -3.6 Septum formation protein Maf compare
Pf6N2E2_2758 -1.1 -5.3 L-aspartate oxidase (EC 1.4.3.16) compare
Pf6N2E2_4025 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_1136 -1.1 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_5525 -1.1 -4.9 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Pf6N2E2_5531 -1.1 -2.3 hypothetical protein compare
Pf6N2E2_5492 -1.1 -2.9 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Pf6N2E2_2526 -1.1 -2.6 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_4305 -1.1 -1.1 FIG00959590: hypothetical protein compare
Pf6N2E2_63 -1.1 -1.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2536 -1.1 -1.5 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_4585 -1.1 -6.0 Cell division protein FtsX compare
Pf6N2E2_146 -1.1 -1.5 Transcriptional regulator, MarR family compare
Pf6N2E2_4841 -1.1 -3.2 Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15) compare
Pf6N2E2_5869 -1.1 -2.4 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_4415 -1.0 -1.5 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_3932 -1.0 -1.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5647 -1.0 -3.7 Transcriptional regulator, TetR family compare
Pf6N2E2_1340 -1.0 -1.6 major pilin protein fimA compare
Pf6N2E2_4233 -1.0 -7.8 sulfatase domain protein, putative compare
Pf6N2E2_4659 -1.0 -3.4 Lipoprotein, putative compare
Pf6N2E2_5455 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_350 -1.0 -1.9 Gfa-like protein compare
Pf6N2E2_4511 -1.0 -5.2 glutamine synthetase family protein compare
Pf6N2E2_248 -1.0 -5.0 hypothetical protein compare
Pf6N2E2_5342 -1.0 -2.2 21 kDa hemolysin precursor compare
Pf6N2E2_4418 -1.0 -0.7 Diaminopimelate epimerase (EC 5.1.1.7) compare


Specific Phenotypes

For 74 genes in this experiment

For carbon source D-Galactose in Pseudomonas fluorescens FW300-N2E2

For carbon source D-Galactose across organisms