Experiment set2IT006 for Methanococcus maripaludis JJ

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS04485 -6.2 -9.5 riboflavin synthase compare
MMJJ_RS03055 -6.0 -4.1 hypothetical protein compare
MMJJ_RS02035 -5.3 -10.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS07720 -5.3 -3.3 UPF0058 family protein compare
MMJJ_RS06625 -4.6 -2.9 pyruvate synthase subunit PorB compare
MMJJ_RS08625 -4.4 -7.3 magnesium/cobalt transporter CorA compare
MMJJ_RS03895 -4.1 -4.8 hydrogenase expression/formation protein HypE compare
MMJJ_RS00450 -4.0 -2.8 DUF126 domain-containing protein compare
MMJJ_RS04730 -4.0 -3.9 tyrosine decarboxylase MfnA compare
MMJJ_RS01755 -4.0 -2.7 ferrous iron transport protein B compare
MMJJ_RS06695 -4.0 -4.2 amidohydrolase compare
MMJJ_RS07360 -4.0 -2.8 TIGR00269 family protein compare
MMJJ_RS08080 -3.9 -11.8 TIGR00300 family protein compare
MMJJ_RS06490 -3.9 -2.7 methanogenesis marker 2 protein compare
MMJJ_RS06040 -3.8 -5.2 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS07350 -3.8 -4.7 4Fe-4S binding protein compare
MMJJ_RS03615 -3.7 -3.8 cobalt-precorrin-8 methylmutase compare
MMJJ_RS05070 -3.7 -3.5 DNA primase catalytic subunit PriS compare
MMJJ_RS07705 -3.6 -2.5 GTP-binding protein EngB compare
MMJJ_RS00275 -3.6 -3.2 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS01870 -3.5 -3.2 methanogenesis marker 15 protein compare
MMJJ_RS07945 -3.4 -4.0 4Fe-4S binding protein compare
MMJJ_RS03125 -3.4 -5.6 GMC oxidoreductase compare
MMJJ_RS01935 -3.4 -6.0 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS06750 -3.4 -3.6 homoaconitase large subunit compare
MMJJ_RS07380 -3.4 -10.5 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS03200 -3.3 -3.8 uroporphyrinogen-III synthase compare
MMJJ_RS00355 -3.2 -4.3 ribonuclease P protein component 4 compare
MMJJ_RS05620 -3.2 -4.9 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS01750 -3.2 -4.3 ferrous iron transport protein A compare
MMJJ_RS04200 -3.2 -8.8 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS07470 -3.2 -3.3 50S ribosome-binding GTPase compare
MMJJ_RS04475 -3.2 -6.2 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS00580 -3.2 -2.4 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS08660 -3.2 -4.2 acetylornithine transaminase compare
MMJJ_RS07000 -3.1 -2.4 TrkH family potassium uptake protein compare
MMJJ_RS03270 -3.1 -3.1 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS03670 -3.1 -5.4 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS07190 -3.0 -4.1 RtcB family protein compare
MMJJ_RS05650 -3.0 -4.1 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS07170 -3.0 -5.7 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS09190 -3.0 -2.7 tryptophan synthase subunit beta compare
MMJJ_RS03190 -3.0 -4.0 phosphopyruvate hydratase compare
MMJJ_RS02200 -3.0 -11.7 chorismate pyruvate-lyase family protein compare
MMJJ_RS03840 -3.0 -4.5 DHH family phosphoesterase compare
MMJJ_RS06180 -3.0 -4.0 tryptophan--tRNA ligase compare
MMJJ_RS01200 -2.9 -3.4 PRC-barrel domain-containing protein compare
MMJJ_RS05415 -2.9 -2.9 hypothetical protein compare
MMJJ_RS00270 -2.9 -3.8 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS06270 -2.9 -10.2 dethiobiotin synthase compare
MMJJ_RS07980 -2.8 -11.5 biotin synthase BioB compare
MMJJ_RS03760 -2.8 -4.2 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS05930 -2.8 -1.9 cell division protein SepF compare
MMJJ_RS05575 -2.7 -4.9 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS03660 -2.7 -4.7 DUF447 family protein compare
MMJJ_RS03005 -2.7 -4.4 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS01880 -2.7 -3.3 RlmE family RNA methyltransferase compare
MMJJ_RS08095 -2.7 -4.9 cobyric acid synthase CobQ compare
MMJJ_RS08870 -2.6 -2.0 2-isopropylmalate synthase compare
MMJJ_RS04685 -2.6 -11.1 carbamoyltransferase HypF compare
MMJJ_RS02090 -2.6 -6.2 tyramine--L-glutamate ligase compare
MMJJ_RS04145 -2.6 -8.0 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS00645 -2.6 -14.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS06175 -2.5 -3.1 DUF1743 domain-containing protein compare
MMJJ_RS01350 -2.5 -6.2 sodium:proton antiporter compare
MMJJ_RS06510 -2.5 -4.0 LL-diaminopimelate aminotransferase compare
MMJJ_RS00125 -2.5 -3.3 KEOPS complex subunit Cgi121 compare
MMJJ_RS06930 -2.5 -3.2 type II methionyl aminopeptidase compare
MMJJ_RS08850 -2.5 -3.0 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS05935 -2.5 -3.2 Era-like GTP-binding protein compare
MMJJ_RS05610 -2.4 -5.4 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS05330 -2.4 -2.7 DNA polymerase II large subunit compare
MMJJ_RS05535 -2.4 -12.7 hypothetical protein compare
MMJJ_RS03170 -2.4 -9.6 DUF5612 domain-containing protein compare
MMJJ_RS05445 -2.4 -2.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS00600 -2.4 -4.4 hydroxymethylbilane synthase compare
MMJJ_RS03815 -2.4 -2.7 nascent polypeptide-associated complex protein compare
MMJJ_RS07455 -2.4 -6.8 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS01600 -2.3 -3.0 radical SAM protein compare
MMJJ_RS06840 -2.3 -4.1 nickel-dependent hydrogenase large subunit compare
MMJJ_RS03580 -2.3 -3.8 TIGR00303 family protein compare
MMJJ_RS01690 -2.3 -4.0 methanogenesis marker 12 protein compare
MMJJ_RS08620 -2.3 -4.9 DUF373 family protein compare
MMJJ_RS04800 -2.3 -6.4 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS04675 -2.3 -7.8 thiamine pyrophosphate-binding protein compare
MMJJ_RS03620 -2.3 -4.9 DUF2097 domain-containing protein compare
MMJJ_RS08155 -2.3 -5.5 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS07410 -2.3 -4.0 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS03820 -2.3 -3.9 hydrogenase formation protein HypD compare
MMJJ_RS05595 -2.3 -3.9 hypothetical protein compare
MMJJ_RS03110 -2.3 -4.8 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS00215 -2.2 -3.1 CCA tRNA nucleotidyltransferase compare
MMJJ_RS05810 -2.2 -6.9 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS06375 -2.2 -4.9 UbiX family flavin prenyltransferase compare
MMJJ_RS07725 -2.2 -7.4 DNA primase DnaG compare
MMJJ_RS05155 -2.2 -6.6 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS07245 -2.2 -6.0 amidohydrolase family protein compare
MMJJ_RS04520 -2.1 -5.0 coenzyme F430 synthase compare
MMJJ_RS05720 -2.1 -3.3 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS03150 -2.1 -5.7 2-phospho-L-lactate transferase compare
MMJJ_RS04995 -2.1 -4.9 Tfx family DNA-binding protein compare
MMJJ_RS07950 -2.1 -3.6 4Fe-4S binding protein compare
MMJJ_RS06260 -2.1 -6.7 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS05995 -2.0 -2.6 ATP-binding cassette domain-containing protein compare
MMJJ_RS06240 -2.0 -3.0 dihydropteroate synthase-like protein compare
MMJJ_RS07415 -2.0 -3.6 polyprenyl diphosphate synthase compare
MMJJ_RS05950 -2.0 -3.7 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS08055 -2.0 -6.9 methanogenesis marker 14 protein compare
MMJJ_RS02045 -1.9 -3.5 molybdenum cofactor guanylyltransferase compare
MMJJ_RS03060 -1.9 -3.0 methanogenesis marker 7 protein compare
MMJJ_RS04155 -1.9 -6.5 hypothetical protein compare
MMJJ_RS08010 -1.9 -7.0 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS01830 -1.9 -3.7 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS00345 -1.9 -10.0 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS06760 -1.9 -4.9 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS06255 -1.9 -6.6 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS03965 -1.9 -2.6 DNA-directed RNA polymerase subunit L compare
MMJJ_RS00570 -1.9 -1.7 ribonuclease P compare
MMJJ_RS06880 -1.9 -1.5 EhaG family protein compare
MMJJ_RS05260 -1.9 -5.0 ATP-grasp domain-containing protein compare
MMJJ_RS01415 -1.9 -2.8 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS07370 -1.9 -4.4 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS01345 -1.9 -4.9 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS05065 -1.9 -2.8 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS03785 -1.8 -3.2 hypothetical protein compare
MMJJ_RS03650 -1.8 -7.2 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS00205 -1.8 -4.7 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS04565 -1.8 -2.9 sirohydrochlorin nickelochelatase compare
MMJJ_RS01810 -1.8 -1.8 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS05420 -1.8 -3.7 DNA-directed DNA polymerase II small subunit compare
MMJJ_RS05655 -1.8 -6.2 HisA/HisF family protein compare
MMJJ_RS06265 -1.8 -11.1 8-amino-7-oxononanoate synthase compare
MMJJ_RS00360 -1.8 -2.4 adenosylhomocysteinase compare
MMJJ_RS06600 -1.8 -3.5 DUF555 domain-containing protein compare
MMJJ_RS00370 -1.8 -2.3 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS04655 -1.8 -6.4 FAD-dependent oxidoreductase compare
MMJJ_RS06170 -1.8 -7.8 hypothetical protein compare
MMJJ_RS06875 -1.8 -2.1 hypothetical protein compare
MMJJ_RS03845 -1.8 -4.8 translation initiation factor IF-2 compare
MMJJ_RS08925 -1.7 -9.4 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS07425 -1.7 -8.7 MBL fold metallo-hydrolase compare
MMJJ_RS04050 -1.7 -1.6 dihydroneopterin aldolase family protein compare
MMJJ_RS05770 -1.7 -2.2 flagellar protein D compare
MMJJ_RS06155 -1.7 -5.8 phosphatidylglycerophosphatase A compare
MMJJ_RS03225 -1.7 -3.3 4Fe-4S binding protein compare
MMJJ_RS00560 -1.7 -2.2 homoisocitrate dehydrogenase compare
MMJJ_RS04700 -1.7 -6.9 deoxyhypusine synthase compare
MMJJ_RS03230 -1.7 -3.5 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS06185 -1.7 -4.2 cobalamin biosynthesis protein compare
MMJJ_RS01360 -1.7 -2.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS00425 -1.7 -3.9 hypothetical protein compare
MMJJ_RS06220 -1.7 -5.4 polyamine aminopropyltransferase compare
MMJJ_RS00210 -1.7 -1.6 DUF530 family protein compare
MMJJ_RS06010 -1.7 -5.9 hypothetical protein compare
MMJJ_RS03095 -1.7 -2.7 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS05295 -1.7 -9.0 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS08340 -1.6 -5.4 archaeoflavoprotein AfpA compare
MMJJ_RS06215 -1.6 -4.6 agmatinase compare
MMJJ_RS03865 -1.6 -2.5 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS06485 -1.6 -2.3 phosphoglycerate kinase compare
MMJJ_RS04985 -1.6 -2.3 glutamyl-tRNA reductase compare
MMJJ_RS04980 -1.6 -3.3 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS05590 -1.6 -2.1 homoserine dehydrogenase compare
MMJJ_RS08535 -1.6 -3.5 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS07345 -1.6 -5.7 homocysteine biosynthesis protein compare
MMJJ_RS08405 -1.6 -10.5 nickel-dependent hydrogenase large subunit compare
MMJJ_RS04975 -1.5 -1.6 glycosyltransferase family 4 protein compare
MMJJ_RS08250 -1.5 -5.6 hydrogenase maturation peptidase HycI compare
MMJJ_RS06030 -1.5 -4.1 4Fe-4S binding protein compare
MMJJ_RS03490 -1.5 -2.0 ribonuclease VapC compare
MMJJ_RS08130 -1.5 -1.1 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS06865 -1.5 -2.2 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS09375 -1.4 -1.6 hypothetical protein compare
MMJJ_RS06805 -1.4 -2.4 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS06015 -1.4 -7.1 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS08325 -1.4 -2.8 glycosyltransferase family 2 protein compare
MMJJ_RS08020 -1.4 -9.4 nucleotidyltransferase domain-containing protein compare
MMJJ_RS02040 -1.4 -1.8 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS06035 -1.4 -7.7 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS06910 -1.4 -2.5 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS05780 -1.4 -2.4 flagellin compare
MMJJ_RS01475 -1.4 -1.9 signal recognition particle-docking protein FtsY compare
MMJJ_RS07015 -1.4 -1.6 PFL family protein compare
MMJJ_RS06705 -1.4 -4.2 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS06380 -1.4 -2.8 signal recognition particle protein Srp54 compare
MMJJ_RS06390 -1.4 -1.3 NADPH-dependent F420 reductase compare
MMJJ_RS01875 -1.4 -4.4 global nitrogen regulator NrpR compare
MMJJ_RS07375 -1.3 -6.3 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS09055 -1.3 -5.7 NFACT family protein compare
MMJJ_RS07160 -1.3 -10.6 M20 family metallo-hydrolase compare
MMJJ_RS07155 -1.3 -6.8 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS04575 -1.3 -5.5 DUF116 domain-containing protein compare
MMJJ_RS06715 -1.3 -8.1 lactaldehyde dehydrogenase compare
MMJJ_RS06855 -1.3 -1.3 DUF2104 domain-containing protein compare
MMJJ_RS07785 -1.3 -2.3 fumarate reductase subunit A compare
MMJJ_RS06025 -1.3 -9.9 4Fe-4S binding protein compare
MMJJ_RS04650 -1.3 -4.3 nitrogenase iron protein compare
MMJJ_RS08335 -1.3 -1.4 ABC transporter ATP-binding protein compare
MMJJ_RS06225 -1.3 -1.2 adenosylmethionine decarboxylase compare
MMJJ_RS08320 -1.3 -1.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms