Experiment set2IT006 for Dyella japonica UNC79MFTsu3.2

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS06700 -6.9 -4.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS06720 -6.9 -4.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS10475 -6.8 -6.6 shikimate kinase compare
ABZR86_RS12070 -6.8 -8.0 anthranilate phosphoribosyltransferase compare
ABZR86_RS11570 -6.1 -11.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS12065 -6.1 -6.0 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS15935 -6.0 -14.4 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS15940 -5.9 -9.8 ketol-acid reductoisomerase compare
ABZR86_RS08710 -5.8 -9.6 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS15945 -5.8 -6.8 dihydroxy-acid dehydratase compare
ABZR86_RS08730 -5.7 -11.0 N-acetylornithine carbamoyltransferase compare
ABZR86_RS08340 -5.7 -5.5 adenylosuccinate synthase compare
ABZR86_RS15960 -5.5 -11.7 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS09635 -5.5 -6.7 phosphoglycerate dehydrogenase compare
ABZR86_RS10715 -5.3 -15.0 serine hydroxymethyltransferase compare
ABZR86_RS15975 -5.3 -13.6 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS08250 -5.3 -3.6 phosphate signaling complex protein PhoU compare
ABZR86_RS15980 -5.3 -5.2 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS08705 -5.2 -11.6 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS14100 -5.2 -7.1 DNA adenine methylase compare
ABZR86_RS06705 -5.2 -6.1 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS02815 -5.1 -17.2 asparagine synthase B compare
ABZR86_RS08000 -5.1 -15.0 tryptophan synthase subunit beta compare
ABZR86_RS08695 -5.1 -11.3 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS14985 -5.1 -13.0 shikimate dehydrogenase compare
ABZR86_RS06715 -5.0 -9.6 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS06730 -5.0 -9.6 histidinol dehydrogenase compare
ABZR86_RS08700 -5.0 -5.9 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS06630 -5.0 -4.8 phosphopyruvate hydratase compare
ABZR86_RS14690 -4.9 -8.2 phosphogluconate dehydratase compare
ABZR86_RS16795 -4.9 -23.2 glutamate synthase large subunit compare
ABZR86_RS06710 -4.9 -8.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS08715 -4.9 -16.0 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS14700 -4.8 -4.7 glucose-6-phosphate dehydrogenase compare
ABZR86_RS07995 -4.8 -7.9 tryptophan synthase subunit alpha compare
ABZR86_RS15965 -4.7 -8.2 branched-chain amino acid transaminase compare
ABZR86_RS11555 -4.7 -11.8 phosphoenolpyruvate carboxylase compare
ABZR86_RS06725 -4.7 -8.9 histidinol-phosphate transaminase compare
ABZR86_RS16800 -4.6 -13.7 FAD-dependent oxidoreductase compare
ABZR86_RS02225 -4.5 -8.1 prephenate dehydratase compare
ABZR86_RS02220 -4.5 -17.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS19030 -4.5 -7.5 cystathionine gamma-synthase compare
ABZR86_RS19860 -4.5 -11.9 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS19800 -4.4 -10.7 RNase adapter RapZ compare
ABZR86_RS19025 -4.4 -5.2 homoserine O-succinyltransferase compare
ABZR86_RS08905 -4.3 -12.1 carbonate dehydratase compare
ABZR86_RS15950 -4.3 -9.1 3-isopropylmalate dehydrogenase compare
ABZR86_RS10215 -4.3 -9.8 inositol monophosphatase family protein compare
ABZR86_RS05875 -4.2 -6.8 cysteine synthase A compare
ABZR86_RS12180 -4.1 -18.7 anthranilate synthase component I compare
ABZR86_RS08040 -4.1 -8.6 chorismate synthase compare
ABZR86_RS13055 -4.0 -13.1 glucokinase compare
ABZR86_RS19560 -4.0 -6.8 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS15460 -4.0 -2.7 type I glutamate--ammonia ligase compare
ABZR86_RS06775 -3.9 -16.4 amidophosphoribosyltransferase compare
ABZR86_RS05995 -3.9 -18.5 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS19235 -3.8 -2.6 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS15315 -3.8 -10.2 phenylalanine 4-monooxygenase compare
ABZR86_RS18675 -3.7 -6.2 phosphoglycerate kinase compare
ABZR86_RS10425 -3.7 -6.1 pyrroline-5-carboxylate reductase compare
ABZR86_RS08010 -3.7 -7.6 phosphoribosylanthranilate isomerase compare
ABZR86_RS12200 -3.7 -7.8 ribulose-phosphate 3-epimerase compare
ABZR86_RS21575 -3.7 -10.6 [protein-PII] uridylyltransferase compare
ABZR86_RS13515 -3.7 -8.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS00830 -3.6 -9.1 glucose-6-phosphate isomerase compare
ABZR86_RS02230 -3.6 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS02885 -3.6 -13.2 sulfate ABC transporter permease subunit CysT compare
ABZR86_RS05885 -3.6 -10.2 LysR substrate-binding domain-containing protein compare
ABZR86_RS15970 -3.6 -8.9 2-isopropylmalate synthase compare
ABZR86_RS12215 -3.6 -4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS06260 -3.5 -4.9 MBL fold metallo-hydrolase compare
ABZR86_RS05900 -3.5 -12.7 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS09885 -3.5 -2.3 trypsin-like peptidase domain-containing protein compare
ABZR86_RS05905 -3.4 -8.7 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS18775 -3.3 -3.0 nucleotidyltransferase family protein compare
ABZR86_RS06000 -3.3 -8.2 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS17085 -3.3 -5.4 type II 3-dehydroquinate dehydratase compare
ABZR86_RS15955 -3.3 -6.5 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS20980 -3.3 -3.0 hypothetical protein compare
ABZR86_RS12780 -3.2 -5.7 pteridine reductase compare
ABZR86_RS05895 -3.2 -13.2 phosphoadenylyl-sulfate reductase compare
ABZR86_RS21020 -3.2 -10.0 ATP-binding protein compare
ABZR86_RS16045 -3.2 -7.9 N-acetylglucosamine-6-phosphate deacetylase compare
ABZR86_RS10480 -3.2 -3.0 3-dehydroquinate synthase compare
ABZR86_RS05890 -3.1 -15.0 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS13850 -3.1 -6.5 phosphoribosylamine--glycine ligase compare
ABZR86_RS02895 -3.1 -7.2 ABC transporter ATP-binding protein compare
ABZR86_RS10830 -3.1 -3.6 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS12885 -3.0 -2.1 magnesium-translocating P-type ATPase compare
ABZR86_RS02880 -3.0 -11.6 sulfate ABC transporter substrate-binding protein compare
ABZR86_RS07585 -3.0 -12.7 homocysteine S-methyltransferase family protein compare
ABZR86_RS07590 -2.9 -16.1 methionine synthase compare
ABZR86_RS08685 -2.9 -5.9 glutamate 5-kinase compare
ABZR86_RS06740 -2.9 -3.3 YerC/YecD family TrpR-related protein compare
ABZR86_RS18655 -2.8 -9.0 transketolase compare
ABZR86_RS12790 -2.8 -5.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
ABZR86_RS05550 -2.8 -4.1 lipopolysaccharide assembly protein LapB compare
ABZR86_RS12005 -2.8 -1.8 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS02890 -2.8 -7.1 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS02450 -2.7 -3.5 hypothetical protein compare
ABZR86_RS08680 -2.6 -9.2 glutamate-5-semialdehyde dehydrogenase compare
ABZR86_RS18615 -2.5 -2.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS18780 -2.4 -2.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS08305 -2.4 -15.4 aminomethyl-transferring glycine dehydrogenase compare
ABZR86_RS19865 -2.3 -4.0 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS07180 -2.3 -5.9 RNA polymerase sigma factor RpoE compare
ABZR86_RS18450 -2.3 -1.5 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS08015 -2.2 -1.8 tRNA pseudouridine(38-40) synthase TruA compare
ABZR86_RS15515 -2.2 -5.2 nitrogen regulation protein NR(I) compare
ABZR86_RS05880 -2.2 -7.9 siroheme synthase CysG compare
ABZR86_RS12605 -2.2 -3.1 thioredoxin TrxA compare
ABZR86_RS12435 -2.2 -10.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS10945 -2.1 -8.2 trehalose-phosphatase compare
ABZR86_RS21480 -2.1 -6.8 arginase family protein compare
ABZR86_RS15985 -2.1 -5.2 homoserine dehydrogenase compare
ABZR86_RS18640 -2.1 -7.8 class I fructose-bisphosphate aldolase compare
ABZR86_RS09145 -2.1 -2.5 hypothetical protein compare
ABZR86_RS11825 -2.0 -2.6 citrate synthase compare
ABZR86_RS18875 -2.0 -8.0 glycine cleavage system aminomethyltransferase GcvT compare
ABZR86_RS15990 -1.9 -3.0 hypothetical protein compare
ABZR86_RS19910 -1.9 -2.8 inorganic phosphate transporter compare
ABZR86_RS18880 -1.9 -6.8 glycine cleavage system protein GcvH compare
ABZR86_RS15640 -1.9 -1.7 orotate phosphoribosyltransferase compare
ABZR86_RS06735 -1.9 -2.6 ATP phosphoribosyltransferase compare
ABZR86_RS10710 -1.8 -2.3 transcriptional regulator NrdR compare
ABZR86_RS12410 -1.8 -2.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS20775 -1.8 -4.5 TetR/AcrR family transcriptional regulator compare
ABZR86_RS18705 -1.7 -1.7 pyridoxal-phosphate dependent enzyme compare
ABZR86_RS09505 -1.7 -7.2 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR86_RS09935 -1.7 -2.3 DUF4105 domain-containing protein compare
ABZR86_RS12595 -1.6 -1.4 cell division ATP-binding protein FtsE compare
ABZR86_RS00570 -1.6 -4.3 acetoacetyl-CoA reductase compare
ABZR86_RS06355 -1.6 -4.7 folate-binding protein YgfZ compare
ABZR86_RS12545 -1.6 -10.2 transaldolase compare
ABZR86_RS19905 -1.6 -4.8 DUF47 domain-containing protein compare
ABZR86_RS03035 -1.6 -1.7 CBS domain-containing protein compare
ABZR86_RS10840 -1.5 -3.3 Holliday junction branch migration protein RuvA compare
ABZR86_RS09075 -1.5 -1.3 NrsF family protein compare
ABZR86_RS10205 -1.5 -5.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS11995 -1.5 -6.9 5-formyltetrahydrofolate cyclo-ligase compare
ABZR86_RS18815 -1.4 -3.9 FAD-binding protein compare
ABZR86_RS15020 -1.4 -1.7 DUF484 family protein compare
ABZR86_RS11845 -1.4 -8.7 RidA family protein compare
ABZR86_RS18960 -1.4 -5.4 TetR/AcrR family transcriptional regulator compare
ABZR86_RS12915 -1.4 -3.6 twin transmembrane helix small protein compare
ABZR86_RS09845 -1.4 -8.9 DUF1631 domain-containing protein compare
ABZR86_RS17965 -1.3 -1.3 hypothetical protein compare
ABZR86_RS18355 -1.3 -1.5 PepSY domain-containing protein compare
ABZR86_RS06590 -1.3 -1.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS19795 -1.3 -5.7 PTS sugar transporter subunit IIA compare
ABZR86_RS18830 -1.3 -4.8 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS12280 -1.3 -1.5 dihydrolipoyl dehydrogenase compare
ABZR86_RS07660 -1.3 -4.0 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS11885 -1.2 -3.8 ATP-binding cassette domain-containing protein compare
ABZR86_RS06580 -1.2 -2.3 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS15330 -1.2 -6.9 TetR/AcrR family transcriptional regulator compare
ABZR86_RS19725 -1.2 -8.8 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR86_RS08775 -1.1 -3.1 HAD-IA family hydrolase compare
ABZR86_RS13370 -1.1 -6.6 twin-arginine translocase subunit TatC compare
ABZR86_RS15305 -1.1 -5.2 MbcA/ParS/Xre antitoxin family protein compare
ABZR86_RS19805 -1.1 -4.4 HPr(Ser) kinase/phosphatase compare
ABZR86_RS16770 -1.1 -1.5 phage holin family protein compare
ABZR86_RS13880 -1.1 -1.4 peptide deformylase compare
ABZR86_RS17180 -1.1 -5.4 glycosyltransferase compare
ABZR86_RS08130 -1.0 -6.1 dCTP deaminase compare
ABZR86_RS05690 -1.0 -1.1 RnfH family protein compare
ABZR86_RS02545 -1.0 -2.1 Ref family recombination enhancement nuclease compare
ABZR86_RS21725 -1.0 -6.8 YhdP family protein compare
ABZR86_RS01730 -1.0 -1.3 DUF3820 family protein compare
ABZR86_RS09015 -1.0 -3.2 anti-sigma factor compare
ABZR86_RS02185 -1.0 -4.5 tRNA 2-thiouridine(34) synthase MnmA compare
ABZR86_RS17095 -1.0 -4.9 protein-disulfide reductase DsbD compare
ABZR86_RS08945 -1.0 -6.4 C40 family peptidase compare
ABZR86_RS08725 -1.0 -2.5 FMN-binding negative transcriptional regulator compare
ABZR86_RS05700 -1.0 -2.5 SsrA-binding protein SmpB compare
ABZR86_RS16345 -1.0 -6.7 NADP-dependent isocitrate dehydrogenase compare
ABZR86_RS02720 -1.0 -2.9 ribonuclease E compare
ABZR86_RS09840 -1.0 -1.0 Trm112 family protein compare
ABZR86_RS16840 -1.0 -2.6 HutD family protein compare
ABZR86_RS18465 -1.0 -4.7 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR86_RS05335 -0.9 -1.5 hemerythrin domain-containing protein compare
ABZR86_RS20965 -0.9 -1.2 hypothetical protein compare
ABZR86_RS17075 -0.9 -3.8 four helix bundle protein compare
ABZR86_RS16745 -0.9 -1.6 hypothetical protein compare
ABZR86_RS19240 -0.9 -3.3 hypothetical protein compare
ABZR86_RS17150 -0.9 -5.7 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
ABZR86_RS13865 -0.9 -0.9 DNA topoisomerase I compare
ABZR86_RS11870 -0.9 -6.0 phospholipid-binding protein MlaC compare
ABZR86_RS05820 -0.9 -2.5 GntR family transcriptional regulator compare
ABZR86_RS10870 -0.9 -1.8 FmdB family zinc ribbon protein compare
ABZR86_RS17880 -0.9 -1.7 hypothetical protein compare
ABZR86_RS02305 -0.9 -0.6 hypothetical protein compare
ABZR86_RS06030 -0.9 -0.9 transcription termination factor NusA compare
ABZR86_RS07665 -0.9 -2.2 exodeoxyribonuclease V subunit beta compare
ABZR86_RS15925 -0.9 -5.8 threonine ammonia-lyase, biosynthetic compare
ABZR86_RS01555 -0.9 -2.5 DUF2239 family protein compare
ABZR86_RS09660 -0.9 -2.9 MerR family transcriptional regulator compare
ABZR86_RS03315 -0.9 -1.5 phage tail protein compare
ABZR86_RS07235 -0.8 -1.0 tRNA-Asp compare
ABZR86_RS08155 -0.8 -3.6 HAD family hydrolase compare


Specific Phenotypes

None in this experiment

For Dyella japonica UNC79MFTsu3.2 in carbon source experiments

For carbon source D-Glucose across organisms