Experiment set2IT005 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3842 -6.7 -4.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5006 -6.6 -6.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_77 -6.5 -4.5 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4597 -6.4 -7.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4826 -6.3 -6.2 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3751 -6.3 -9.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3610 -6.2 -6.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_64 -5.9 -4.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3630 -5.7 -7.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4596 -5.7 -10.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_71 -5.6 -6.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_5175 -5.6 -15.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3782 -5.6 -5.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5176 -5.4 -10.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_4047 -5.3 -6.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_2258 -5.3 -11.2 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2753 -5.2 -3.6 HtrA protease/chaperone protein compare
Pf6N2E2_3839 -5.2 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_1381 -5.0 -10.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_4825 -4.8 -11.1 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3752 -4.8 -22.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5780 -4.6 -12.2 Periplasmic protease compare
Pf6N2E2_3060 -4.5 -3.1 Outer membrane protein H precursor compare
Pf6N2E2_3252 -4.5 -10.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4048 -4.5 -8.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5177 -4.5 -12.2 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4564 -4.4 -9.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3248 -4.3 -6.1 Probable transmembrane protein compare
Pf6N2E2_3783 -4.2 -7.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3062 -4.1 -5.9 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3253 -4.1 -8.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3841 -4.1 -8.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5156 -4.1 -2.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_1932 -4.0 -8.0 Transcriptional regulator, IclR family compare
Pf6N2E2_3611 -4.0 -2.7 HflC protein compare
Pf6N2E2_4362 -3.9 -5.3 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_1665 -3.8 -5.6 hypothetical protein compare
Pf6N2E2_1401 -3.7 -10.1 FIG00955631: hypothetical protein compare
Pf6N2E2_3661 -3.7 -7.4 hypothetical protein compare
Pf6N2E2_66 -3.6 -10.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3932 -3.5 -4.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_2217 -3.5 -7.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4372 -3.5 -8.1 FIG00460773: hypothetical protein compare
Pf6N2E2_4638 -3.5 -4.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4611 -3.3 -5.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4077 -3.3 -2.2 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5150 -3.3 -8.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_1400 -3.2 -9.3 Sensory box histidine kinase/response regulator compare
Pf6N2E2_2574 -3.1 -3.6 Flagellar synthesis regulator FleN compare
Pf6N2E2_5579 -3.1 -8.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_2752 -3.0 -11.9 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_1664 -3.0 -10.4 Nitrate/nitrite transporter compare
Pf6N2E2_1668 -3.0 -10.7 Xylonate dehydratase (EC 4.2.1.82) (from data) conserved
Pf6N2E2_2756 -3.0 -10.0 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_658 -2.9 -10.2 sensor histidine kinase compare
Pf6N2E2_5316 -2.9 -3.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2010 -2.9 -3.3 hypothetical protein compare
Pf6N2E2_1402 -2.8 -5.7 hypothetical protein compare
Pf6N2E2_4752 -2.7 -14.5 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_4803 -2.6 -2.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5160 -2.6 -2.3 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_63 -2.6 -4.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5723 -2.5 -10.9 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_2218 -2.5 -5.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4206 -2.5 -3.3 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3257 -2.5 -5.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_302 -2.5 -6.3 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3460 -2.4 -2.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4759 -2.4 -14.8 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_3940 -2.4 -10.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_1056 -2.3 -1.2 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2073 -2.3 -6.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_1666 -2.2 -3.9 Transcriptional regulator, LysR family compare
Pf6N2E2_3258 -2.2 -5.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3170 -2.2 -4.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_5255 -2.2 -10.0 Outer membrane stress sensor protease DegS compare
Pf6N2E2_3282 -2.1 -3.2 FIG005080: Possible exported protein compare
Pf6N2E2_5328 -2.1 -5.0 FIG00958649: hypothetical protein compare
Pf6N2E2_2885 -2.1 -7.7 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_5014 -2.1 -1.9 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_805 -2.0 -8.7 Xylulose kinase (EC 2.7.1.17) (from data) conserved
Pf6N2E2_2514 -2.0 -4.5 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_863 -2.0 -8.9 Transcriptional regulator, IclR family compare
Pf6N2E2_4009 -1.9 -8.8 GGDEF domain protein compare
Pf6N2E2_4479 -1.9 -4.0 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_3984 -1.9 -10.3 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_1667 -1.8 -2.1 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_2487 -1.7 -1.6 FIG00956090: hypothetical protein compare
Pf6N2E2_3942 -1.7 -8.5 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3349 -1.7 -2.5 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3260 -1.7 -5.9 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2261 -1.7 -7.5 VacJ-like lipoprotein precursor compare
Pf6N2E2_5841 -1.7 -1.5 GlcG protein compare
Pf6N2E2_5936 -1.7 -2.9 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_3612 -1.7 -2.8 HflK protein compare
Pf6N2E2_2074 -1.6 -2.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2292 -1.6 -3.1 Universal stress protein family COG0589 compare
Pf6N2E2_4453 -1.6 -12.2 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_5727 -1.6 -5.4 FIG00955360: hypothetical protein compare
Pf6N2E2_2508 -1.5 -3.3 hypothetical protein compare
Pf6N2E2_5527 -1.5 -3.0 Cold shock protein CspC compare
Pf6N2E2_5843 -1.5 -3.1 hypothetical protein compare
Pf6N2E2_2510 -1.5 -3.7 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5919 -1.5 -2.3 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_3613 -1.5 -6.4 GTP-binding protein HflX compare
Pf6N2E2_3835 -1.4 -3.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5943 -1.4 -2.0 hypothetical protein compare
Pf6N2E2_3833 -1.4 -4.5 hypothetical protein compare
Pf6N2E2_3834 -1.4 -4.5 Lipoprotein NlpD compare
Pf6N2E2_5816 -1.4 -1.6 Smr domain protein compare
Pf6N2E2_5219 -1.4 -7.8 FIG140336: TPR domain protein compare
Pf6N2E2_3134 -1.3 -1.1 hypothetical protein compare
Pf6N2E2_4352 -1.3 -2.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4059 -1.3 -1.4 DNA-binding protein HU-alpha compare
Pf6N2E2_4417 -1.3 -3.4 Protein of unknown function DUF484 compare
Pf6N2E2_5894 -1.3 -6.2 Putative threonine efflux protein compare
Pf6N2E2_178 -1.3 -1.2 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3132 -1.2 -3.2 FIG00954548: hypothetical protein compare
Pf6N2E2_4527 -1.2 -2.3 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_1315 -1.2 -1.7 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_5899 -1.2 -5.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3941 -1.1 -2.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_4416 -1.1 -2.3 Tyrosine recombinase XerC compare
Pf6N2E2_4205 -1.1 -3.0 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_623 -1.1 -1.0 FIG00954674: hypothetical protein compare
Pf6N2E2_504 -1.1 -2.9 DNA-binding response regulator compare
Pf6N2E2_4996 -1.1 -2.2 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_4305 -1.1 -1.3 FIG00959590: hypothetical protein compare
Pf6N2E2_50 -1.1 -5.9 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_2506 -1.1 -7.6 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_434 -1.1 -2.3 hypothetical protein compare
Pf6N2E2_2507 -1.1 -4.0 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2022 -1.1 -5.7 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_5430 -1.1 -5.6 Transglycosylase, Slt family compare
Pf6N2E2_1453 -1.1 -3.5 Xylose activator XylR (AraC family) compare
Pf6N2E2_4511 -1.0 -6.7 glutamine synthetase family protein compare
Pf6N2E2_2496 -1.0 -1.8 FIG00956575: hypothetical protein compare
Pf6N2E2_5704 -1.0 -4.8 Transcriptional regulatory protein PhoP compare
Pf6N2E2_2124 -1.0 -1.4 Mg(2+) transport ATPase protein C compare
Pf6N2E2_2750 -1.0 -5.1 Putative permease PerM (= YfgO) compare
Pf6N2E2_622 -1.0 -3.1 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_248 -1.0 -5.2 hypothetical protein compare
Pf6N2E2_3271 -1.0 -0.9 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_5609 -1.0 -4.0 DNA-binding response regulator ColR compare
Pf6N2E2_4817 -1.0 -8.0 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_3663 -1.0 -3.8 Glycosyl transferase compare
Pf6N2E2_5243 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_4584 -1.0 -1.6 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_133 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_624 -0.9 -3.7 hypothetical protein PA3071 compare
Pf6N2E2_5768 -0.9 -2.4 DNA recombination-dependent growth factor C compare
Pf6N2E2_5728 -0.9 -2.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_1085 -0.9 -1.9 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_3617 -0.9 -2.8 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_6095 -0.9 -2.0 tRNA-Asn-GTT compare
Pf6N2E2_6140 -0.9 -0.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5610 -0.9 -4.2 two-component system sensor protein compare
Pf6N2E2_2746 -0.9 -4.3 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_5181 -0.9 -5.6 Paraquat-inducible protein A compare
Pf6N2E2_84 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_5185 -0.9 -5.4 FIG00961017: hypothetical protein compare
Pf6N2E2_89 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_1670 -0.9 -1.9 conserved membrane protein compare
Pf6N2E2_1446 -0.8 -2.3 Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10) compare
Pf6N2E2_1457 -0.8 -4.0 Xylose ABC transporter, permease protein XylH compare
Pf6N2E2_1450 -0.8 -1.3 FIG00960438: hypothetical protein compare
Pf6N2E2_1454 -0.8 -4.0 Xylose isomerase (EC 5.3.1.5) compare
Pf6N2E2_288 -0.8 -1.2 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_48 -0.8 -3.2 FIG00955661: hypothetical protein compare
Pf6N2E2_5453 -0.8 -2.5 hypothetical protein compare
Pf6N2E2_3845 -0.8 -4.0 A/G-specific adenine glycosylase (EC 3.2.2.-) compare
Pf6N2E2_3461 -0.8 -1.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4585 -0.8 -5.7 Cell division protein FtsX compare
Pf6N2E2_4057 -0.8 -0.7 lipoprotein, putative compare
Pf6N2E2_1456 -0.8 -2.4 D-xylose transport ATP-binding protein XylG compare
Pf6N2E2_4024 -0.8 -4.2 L-Proline/Glycine betaine transporter ProP compare
Pf6N2E2_5054 -0.8 -3.7 YpfJ protein, zinc metalloprotease superfamily compare
Pf6N2E2_180 -0.8 -2.0 Transcriptional regulator, MerR family compare
Pf6N2E2_3698 -0.8 -2.3 Nicotinamidase family protein YcaC compare
Pf6N2E2_4999 -0.8 -3.3 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_5991 -0.8 -1.7 proteinase inhibitor compare
Pf6N2E2_3192 -0.8 -3.0 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_4160 -0.8 -1.2 Cytochrome c5 compare
Pf6N2E2_808 -0.8 -4.9 Various polyols ABC transporter, permease component 2 compare
Pf6N2E2_40 -0.8 -2.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5183 -0.8 -6.1 Paraquat-inducible protein B compare
Pf6N2E2_625 -0.8 -3.3 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_2003 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_4273 -0.8 -4.2 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_234 -0.8 -1.5 FIG00454312: hypothetical protein compare
Pf6N2E2_4204 -0.8 -1.4 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_579 -0.8 -1.7 FIG00962753: hypothetical protein compare
Pf6N2E2_5748 -0.8 -1.2 Transcriptional activator protein LuxR compare
Pf6N2E2_5756 -0.8 -2.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2985 -0.8 -2.6 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_75 -0.8 -2.3 Colicin V production protein compare
Pf6N2E2_5087 -0.7 -2.7 Transcription elongation factor GreB-related protein compare
Pf6N2E2_3325 -0.7 -2.1 ABC transporter, ATP-binding protein compare
Pf6N2E2_1917 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_2456 -0.7 -2.4 Transcriptional regulator, LysR family compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source D-Xylose in Pseudomonas fluorescens FW300-N2E2

For carbon source D-Xylose across organisms