Experiment set2IT005 for Bifidobacterium breve UCC2003

Compare to:

CDM1

200 most important genes:

  gene name fitness t score description  
BBR_RS11210 -7.5 -5.2 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS18695 -7.2 -7.0 PRD domain-containing protein compare
BBR_RS17615 -6.6 -4.5 phosphoserine phosphatase SerB compare
BBR_RS18735 -6.5 -21.3 hypothetical protein compare
BBR_RS17375 -6.4 -4.4 amino acid ABC transporter ATP-binding protein compare
BBR_RS16820 -6.4 -4.4 RNA polymerase sigma factor RpoE compare
BBR_RS11020 -6.3 -8.7 ACT domain-containing protein compare
BBR_RS11015 -6.2 -9.5 aspartate kinase compare
BBR_RS11025 -6.1 -15.4 aspartate-semialdehyde dehydrogenase compare
BBR_RS18955 -6.0 -12.8 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS12235 -6.0 -2.1 hypothetical protein compare
BBR_RS11720 -5.8 -7.6 DUF2469 domain-containing protein compare
BBR_RS17990 -5.8 -14.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS19535 -5.8 -11.7 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS17370 -5.7 -7.8 ABC transporter substrate-binding protein compare
BBR_RS13040 -5.6 -3.9 CHAP domain-containing protein compare
BBR_RS11205 -5.6 -5.2 HPr family phosphocarrier protein compare
BBR_RS10445 -5.6 -10.1 HlyC/CorC family transporter compare
BBR_RS18570 -5.5 -11.9 phosphoserine transaminase compare
BBR_RS14215 -5.5 -5.4 peptidase compare
BBR_RS18690 -5.5 -5.4 diacylglycerol kinase compare
BBR_RS10620 -5.4 -7.4 phosphoprotein phosphatase compare
BBR_RS19475 -5.3 -23.0 AEC family transporter compare
BBR_RS15675 -5.2 -5.1 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS16970 -5.2 -5.1 phosphoglycerate dehydrogenase compare
BBR_RS17365 -5.2 -6.2 ABC transporter permease compare
BBR_RS12545 -5.0 -6.0 DUF4012 domain-containing protein compare
BBR_RS15680 -5.0 -7.6 succinate--CoA ligase subunit alpha compare
BBR_RS14365 -4.8 -8.1 hypothetical protein compare
BBR_RS15070 -4.8 -3.3 endolytic transglycosylase MltG compare
BBR_RS10660 -4.8 -22.7 esterase compare
BBR_RS16430 -4.7 -3.2 nucleotide pyrophosphatase compare
BBR_RS10625 -4.7 -3.7 FHA domain-containing protein compare
BBR_RS19240 -4.5 -16.5 LacI family transcriptional regulator compare
BBR_RS14210 -4.5 -3.9 hypothetical protein compare
BBR_RS16670 -4.5 -5.2 hypothetical protein compare
BBR_RS14070 -4.5 -5.4 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS15170 -4.4 -6.7 HlyC/CorC family transporter compare
BBR_RS17290 -4.3 -9.3 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS18565 -4.2 -2.5 CHAP domain-containing protein compare
BBR_RS17460 -4.2 -9.4 TPM domain-containing protein compare
BBR_RS19740 -4.2 -20.4 DUF2142 domain-containing protein compare
BBR_RS12995 -4.1 -9.1 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS12460 -4.1 -7.9 LacI family DNA-binding transcriptional regulator compare
BBR_RS13030 -4.1 -4.0 cell division ATP-binding protein FtsE compare
BBR_RS13740 -4.1 -6.2 DUF3052 domain-containing protein compare
BBR_RS16750 -4.1 -3.9 ParA family protein compare
BBR_RS19470 -4.0 -23.7 succinyl-diaminopimelate desuccinylase compare
BBR_RS20465 -3.9 -10.4 chromosome partitioning protein compare
BBR_RS19165 -3.8 -4.0 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS19555 -3.8 -25.7 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BBR_RS15755 -3.8 -2.7 hypothetical protein compare
BBR_RS15520 -3.7 -2.6 shikimate 5-dehydrogenase compare
BBR_RS13450 -3.7 -3.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS20885 -3.7 -1.3 hypothetical protein compare
BBR_RS14625 -3.6 -9.1 pyrroline-5-carboxylate reductase compare
BBR_RS19160 -3.6 -1.7 phosphate ABC transporter permease subunit PstC compare
BBR_RS16675 -3.6 -4.2 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS16610 -3.6 -6.6 hypothetical protein compare
BBR_RS13700 -3.5 -11.4 diaminopimelate epimerase compare
BBR_RS14370 -3.5 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS15650 -3.5 -3.3 Holliday junction resolvase compare
BBR_RS15085 -3.5 -2.1 3-dehydroquinate synthase compare
BBR_RS14260 -3.4 -1.7 ABC transporter ATP-binding protein compare
BBR_RS19120 -3.4 -13.4 helicase compare
BBR_RS12660 -3.4 -10.4 EpsG family protein compare
BBR_RS11540 -3.4 -4.0 DUF1727 domain-containing protein compare
BBR_RS19355 -3.4 -2.4 tRNA-Gly compare
BBR_RS15080 -3.3 -3.2 chorismate synthase compare
BBR_RS19945 -3.3 -11.8 MarR family transcriptional regulator compare
BBR_RS17905 -3.3 -26.1 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS19190 -3.3 -7.6 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS14265 -3.2 -7.0 Solute-binding protein of ABC transporter system for metals compare
BBR_RS18725 -3.2 -4.4 ribonuclease HI compare
BBR_RS16155 -3.2 -8.5 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS10555 -3.2 -2.7 DUF3073 domain-containing protein compare
BBR_RS16425 -3.2 -3.5 DUF3071 domain-containing protein compare
BBR_RS20920 -3.1 -4.0 hypothetical protein compare
BBR_RS19375 -3.1 -2.5 acyl-CoA carboxylase subunit beta compare
BBR_RS14190 -3.1 -8.6 transcriptional regulator compare
BBR_RS12900 -3.0 -2.7 DeoR/GlpR transcriptional regulator compare
BBR_RS19700 -3.0 -20.8 ATP-dependent chaperone ClpB compare
BBR_RS16600 -3.0 -10.9 aconitate hydratase AcnA compare
BBR_RS11515 -3.0 -16.9 ammonium transporter compare
BBR_RS20775 -3.0 -2.5 DUF4230 domain-containing protein compare
BBR_RS19760 -3.0 -2.5 polysaccharide ABC transporter ATPase compare
BBR_RS13125 -3.0 -1.2 ABC transporter permease compare
BBR_RS20430 -2.9 -4.9 hypothetical protein compare
BBR_RS15180 -2.9 -9.9 long-chain fatty acid--CoA ligase compare
BBR_RS10755 -2.9 -5.9 adenylosuccinate synthase compare
BBR_RS16220 -2.9 -1.0 DNA cytosine methyltransferase compare
BBR_RS17360 -2.9 -5.6 amino acid ABC transporter permease compare
BBR_RS12760 -2.7 -7.3 hypothetical protein compare
BBR_RS19125 -2.7 -11.0 hypothetical protein compare
BBR_RS19155 -2.7 -8.3 phosphate ABC transporter, permease protein PstA compare
BBR_RS12310 -2.7 -2.1 signal recognition particle protein compare
BBR_RS11680 -2.6 -12.5 23S rRNA methyltransferase compare
BBR_RS11505 -2.6 -14.4 TetR/AcrR family transcriptional regulator compare
BBR_RS19540 -2.5 -1.7 homoserine dehydrogenase compare
BBR_RS12810 -2.5 -10.3 hypothetical protein compare
BBR_RS13735 -2.5 -1.5 Lon protease compare
BBR_RS12635 -2.5 -14.7 polysaccharide biosynthesis protein compare
BBR_RS16905 -2.4 -4.0 hypothetical protein compare
BBR_RS11770 -2.3 -3.8 chorismate mutase compare
BBR_RS19095 -2.3 -9.6 magnesium transporter compare
BBR_RS15090 -2.3 -1.1 type II 3-dehydroquinate dehydratase compare
BBR_RS11675 -2.3 -2.3 hypothetical protein compare
BBR_RS16540 -2.3 -3.9 XRE family transcriptional regulator compare
BBR_RS17495 -2.2 -8.3 DUF58 domain-containing protein compare
BBR_RS15860 -2.2 -1.0 DUF2316 domain-containing protein compare
BBR_RS11355 -2.2 -7.2 hypothetical protein compare
BBR_RS19390 -2.2 -2.5 hypothetical protein compare
BBR_RS14205 -2.2 -3.3 hypothetical protein compare
BBR_RS18555 -2.1 -8.0 NlpC/P60 family protein compare
BBR_RS13770 -2.1 -2.8 DNA repair protein RecO compare
BBR_RS14330 -2.1 -1.5 glycogen debranching enzyme GlgX compare
BBR_RS12980 -2.1 -12.3 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS10740 -2.1 -1.5 tRNA-Gly compare
BBR_RS12705 -2.1 -9.6 hypothetical protein compare
BBR_RS18215 -2.1 -6.5 AI-2E family transporter compare
BBR_RS18700 -2.1 -3.6 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS15805 -2.1 -5.1 prolipoprotein diacylglyceryl transferase compare
BBR_RS11715 -2.1 -13.5 N-acetyltransferase compare
BBR_RS19050 -2.1 -12.7 succinyldiaminopimelate transaminase compare
BBR_RS12630 -2.0 -12.2 glycosyltransferase family 1 protein compare
BBR_RS12975 -2.0 -10.9 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS12710 -2.0 -4.6 hypothetical protein compare
BBR_RS12375 -2.0 -1.9 pantetheine-phosphate adenylyltransferase compare
BBR_RS18745 -2.0 -1.4 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS15335 -2.0 -4.4 hypothetical protein compare
BBR_RS12905 -2.0 -3.0 galactose-1-phosphate uridylyltransferase compare
BBR_RS19905 -2.0 -1.2 methionine--tRNA ligase compare
BBR_RS13820 -2.0 -1.9 ATP-binding protein compare
BBR_RS13455 -2.0 -3.6 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS17135 -2.0 -1.2 RluA family pseudouridine synthase compare
BBR_RS17515 -1.9 -7.4 hypothetical protein compare
BBR_RS12700 -1.9 -7.5 hypothetical protein compare
BBR_RS14660 -1.9 -2.4 transcriptional regulator compare
BBR_RS17510 -1.9 -6.5 VWA domain-containing protein compare
BBR_RS14280 -1.9 -2.7 dephospho-CoA kinase compare
BBR_RS17490 -1.9 -10.0 MoxR family ATPase compare
BBR_RS16965 -1.9 -1.3 ATP-dependent DNA helicase compare
BBR_RS13070 -1.9 -1.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS19325 -1.9 -3.2 hypothetical protein compare
BBR_RS20450 -1.8 -12.0 murein biosynthesis integral membrane protein MurJ compare
BBR_RS14230 -1.8 -5.9 HAMP domain-containing histidine kinase compare
BBR_RS12720 -1.8 -2.1 hypothetical protein compare
BBR_RS14655 -1.8 -4.7 AraC family transcriptional regulator compare
BBR_RS13405 -1.7 -4.3 hypothetical protein compare
BBR_RS16975 -1.7 -3.5 transcriptional repressor NrdR compare
BBR_RS15880 -1.7 -3.3 hypothetical protein compare
BBR_RS14075 -1.7 -4.3 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS16245 -1.7 -2.4 ribosomal-protein-alanine N-acetyltransferase compare
BBR_RS19445 -1.7 -12.6 glutamate 5-kinase compare
BBR_RS13300 -1.7 -1.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS16955 -1.7 -1.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS12645 -1.7 -5.3 acyltransferase compare
BBR_RS11500 -1.7 -8.3 glycosyltransferase family 2 protein compare
BBR_RS13370 -1.6 -2.7 phosphoribosylamine--glycine ligase compare
BBR_RS20455 -1.6 -8.0 thioredoxin-disulfide reductase compare
BBR_RS19055 -1.6 -1.7 ferredoxin family protein compare
BBR_RS14240 -1.6 -5.6 1,4-alpha-glucan branching protein GlgB compare
BBR_RS10910 -1.6 -8.7 molecular chaperone DnaJ compare
BBR_RS18050 -1.6 -2.4 threonylcarbamoyl-AMP synthase compare
BBR_RS10900 -1.6 -1.1 molecular chaperone DnaK compare
BBR_RS17505 -1.5 -6.8 VWA domain-containing protein compare
BBR_RS18550 -1.5 -6.0 universal stress protein compare
BBR_RS14200 -1.5 -3.1 WhiB family transcriptional regulator compare
BBR_RS12640 -1.5 -7.5 glycosyl transferase compare
BBR_RS20825 -1.5 -1.8 hypothetical protein compare
BBR_RS13840 -1.5 -3.9 DUF3043 domain-containing protein compare
BBR_RS15750 -1.5 -1.0 hypothetical protein compare
BBR_RS20420 -1.5 -7.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS20460 -1.5 -3.6 chromosome partitioning protein ParB compare
BBR_RS12650 -1.5 -7.7 polysaccharide pyruvyl transferase family protein compare
BBR_RS16845 -1.5 -1.6 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS15230 -1.5 -3.9 elongation factor 4 compare
BBR_RS17865 -1.4 -3.1 MarR family transcriptional regulator compare
BBR_RS13035 -1.4 -1.5 ABC transporter permease compare
BBR_RS12770 -1.4 -3.4 hypothetical protein compare
BBR_RS13830 -1.4 -0.8 DUF4191 domain-containing protein compare
BBR_RS12175 -1.4 -6.2 TetR/AcrR family transcriptional regulator compare
BBR_RS16020 -1.4 -1.8 hypothetical protein compare
BBR_RS14540 -1.4 -2.8 Na+/H+ antiporter NhaA compare
BBR_RS19645 -1.4 -6.1 RNA degradosome polyphosphate kinase compare
BBR_RS13510 -1.4 -4.8 LysR family transcriptional regulator compare
BBR_RS19745 -1.4 -9.9 LTA synthase family protein compare
BBR_RS20935 -1.4 -1.4 hypothetical protein compare
BBR_RS10615 -1.4 -5.3 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS18375 -1.4 -7.1 ATP-dependent helicase compare
BBR_RS17720 -1.4 -6.7 CRISPR-associated helicase/endonuclease Cas3 compare
BBR_RS17500 -1.3 -5.1 hypothetical protein compare
BBR_RS16250 -1.3 -2.2 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS19350 -1.3 -2.4 tRNA-Val compare
BBR_RS10990 -1.3 -5.1 recombination protein RecR compare
BBR_RS16445 -1.3 -3.6 hypothetical protein compare
BBR_RS16575 -1.3 -4.0 (p)ppGpp synthetase compare
BBR_RS19070 -1.3 -1.0 50S ribosomal protein L33 compare
BBR_RS19450 -1.3 -1.1 GTPase ObgE compare
BBR_RS15340 -1.3 -2.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in nutrient dropout control experiments