Experiment set2IT004 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with Manganese (II) chloride tetrahydrate 6.25 mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS13675 -5.2 -3.4 methyl-accepting chemotaxis protein compare
LRK54_RS02445 -3.7 -3.6 membrane protein insertion efficiency factor YidD compare
LRK54_RS02185 -3.2 -3.8 exodeoxyribonuclease V subunit alpha compare
LRK54_RS02260 -3.0 -6.9 hypothetical protein compare
LRK54_RS05350 -3.0 -6.3 manganese efflux pump MntP family protein compare
LRK54_RS07980 -2.8 -2.7 nitrogen regulation protein NR(I) compare
LRK54_RS10170 -2.8 -21.2 YbaY family lipoprotein compare
LRK54_RS02955 -2.8 -2.9 efflux transporter outer membrane subunit compare
LRK54_RS16940 -2.6 -3.1 RNA polymerase sigma factor RpoE compare
LRK54_RS04350 -2.6 -3.6 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS02970 -2.6 -5.3 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK54_RS06675 -2.6 -7.7 TetR/AcrR family transcriptional regulator compare
LRK54_RS12860 -2.6 -3.5 RNase adapter RapZ compare
LRK54_RS00345 -2.5 -4.2 TraB/GumN family protein compare
LRK54_RS04230 -2.5 -12.8 HAMP domain-containing histidine kinase compare
LRK54_RS04235 -2.5 -15.7 response regulator transcription factor compare
LRK54_RS05650 -2.4 -2.9 ABC transporter ATP-binding protein compare
LRK54_RS10950 -2.4 -11.6 S41 family peptidase compare
LRK54_RS06470 -2.4 -10.1 carboxy terminal-processing peptidase compare
LRK54_RS03710 -2.4 -7.5 tetratricopeptide repeat protein compare
LRK54_RS11375 -2.4 -7.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS15105 -2.4 -5.9 polynucleotide adenylyltransferase PcnB compare
LRK54_RS04240 -2.4 -16.5 TonB-dependent siderophore receptor compare
LRK54_RS05110 -2.4 -1.3 glycosyltransferase family 4 protein compare
LRK54_RS01585 -2.4 -7.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK54_RS00680 -2.4 -9.1 TerC family protein compare
LRK54_RS09110 -2.3 -17.5 phospholipase D family protein compare
LRK54_RS16150 -2.3 -3.1 cell wall hydrolase compare
LRK54_RS04340 -2.3 -7.3 ribosomal protein S18-alanine N-acetyltransferase compare
LRK54_RS13760 -2.3 -7.3 trypsin-like peptidase domain-containing protein compare
LRK54_RS02895 -2.3 -9.8 rhomboid family intramembrane serine protease compare
LRK54_RS02975 -2.3 -11.7 alpha/beta fold hydrolase compare
LRK54_RS14590 -2.2 -6.1 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS03125 -2.2 -1.5 preprotein translocase subunit YajC compare
LRK54_RS02960 -2.2 -12.7 ABC transporter permease compare
LRK54_RS12595 -2.2 -4.4 (2Fe-2S)-binding protein compare
LRK54_RS11170 -2.2 -3.7 NADP-dependent malic enzyme compare
LRK54_RS06885 -2.2 -6.4 rhodanese-like domain-containing protein compare
LRK54_RS05980 -2.2 -3.0 ATP-binding protein compare
LRK54_RS09250 -2.2 -17.1 rhomboid family intramembrane serine protease compare
LRK54_RS08760 -2.2 -3.3 transaldolase compare
LRK54_RS00085 -2.1 -1.5 tetratricopeptide repeat protein compare
LRK54_RS10150 -2.1 -2.0 DNA topoisomerase I compare
LRK54_RS05655 -2.1 -2.5 ABC transporter permease compare
LRK54_RS02945 -2.1 -9.0 response regulator compare
LRK54_RS12305 -2.1 -10.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS11385 -2.1 -4.8 co-chaperone DjlA compare
LRK54_RS16865 -2.1 -8.1 protein phosphatase 2C domain-containing protein compare
LRK54_RS02335 -2.0 -7.9 FUSC family protein compare
LRK54_RS02265 -2.0 -14.6 ferrous iron transporter B compare
LRK54_RS15935 -2.0 -9.3 rRNA pseudouridine synthase compare
LRK54_RS04720 -2.0 -6.5 phosphoribosylformylglycinamidine synthase compare
LRK54_RS05985 -2.0 -2.7 response regulator transcription factor compare
LRK54_RS03895 -2.0 -11.7 lipopolysaccharide biosynthesis protein compare
LRK54_RS00705 -2.0 -9.6 alkyl hydroperoxide reductase subunit C compare
LRK54_RS06610 -2.0 -13.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS16660 -2.0 -8.4 VTT domain-containing protein compare
LRK54_RS12460 -2.0 -1.9 hypothetical protein compare
LRK54_RS13780 -2.0 -6.3 glutathione S-transferase N-terminal domain-containing protein compare
LRK54_RS05415 -1.9 -7.2 TetR/AcrR family transcriptional regulator compare
LRK54_RS12670 -1.9 -7.9 glycosyltransferase compare
LRK54_RS04585 -1.9 -5.3 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS14695 -1.9 -10.1 rhomboid family intramembrane serine protease compare
LRK54_RS04370 -1.9 -4.7 threonine/serine exporter family protein compare
LRK54_RS12865 -1.9 -7.5 HPr(Ser) kinase/phosphatase compare
LRK54_RS11830 -1.9 -14.8 penicillin-binding protein 1A compare
LRK54_RS08520 -1.9 -12.4 ATP-dependent protease ATPase subunit HslU compare
LRK54_RS17270 -1.9 -3.3 DNA translocase FtsK compare
LRK54_RS02855 -1.9 -5.0 type I restriction-modification system subunit M compare
LRK54_RS04820 -1.8 -1.5 GspH/FimT family pseudopilin compare
LRK54_RS00430 -1.8 -2.2 NUDIX hydrolase compare
LRK54_RS12590 -1.8 -10.8 molybdopterin-dependent oxidoreductase compare
LRK54_RS14825 -1.8 -4.9 protease HtpX compare
LRK54_RS03675 -1.8 -2.1 redox-regulated ATPase YchF compare
LRK54_RS09155 -1.8 -4.6 SPOR domain-containing protein compare
LRK54_RS16755 -1.8 -3.2 SurA N-terminal domain-containing protein compare
LRK54_RS14560 -1.8 -7.4 hypothetical protein compare
LRK54_RS05020 -1.8 -11.6 sigma-54 dependent transcriptional regulator compare
LRK54_RS05770 -1.8 -13.5 energy transducer TonB compare
LRK54_RS06685 -1.7 -11.1 TolC family outer membrane protein compare
LRK54_RS05455 -1.7 -11.8 monofunctional biosynthetic peptidoglycan transglycosylase compare
LRK54_RS11975 -1.7 -5.0 SLC13 family permease compare
LRK54_RS00440 -1.7 -6.3 high frequency lysogenization protein HflD compare
LRK54_RS05495 -1.7 -4.6 met regulon transcriptional regulator MetJ compare
LRK54_RS07075 -1.7 -9.9 magnesium-translocating P-type ATPase compare
LRK54_RS08585 -1.7 -14.0 RimK family alpha-L-glutamate ligase compare
LRK54_RS02090 -1.7 -11.5 NAD-glutamate dehydrogenase compare
LRK54_RS02470 -1.7 -4.3 YciI family protein compare
LRK54_RS00620 -1.7 -7.7 FtsH protease activity modulator HflK compare
LRK54_RS12625 -1.7 -10.4 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS11055 -1.7 -10.6 lipid-binding SYLF domain-containing protein compare
LRK54_RS10865 -1.7 -10.7 DEAD/DEAH box helicase compare
LRK54_RS15090 -1.7 -6.7 hypothetical protein compare
LRK54_RS00670 -1.7 -4.7 OmpA family protein compare
LRK54_RS05615 -1.7 -10.4 hypothetical protein compare
LRK54_RS12945 -1.6 -7.1 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS00675 -1.6 -8.6 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS17900 -1.6 -2.6 4a-hydroxytetrahydrobiopterin dehydratase compare
LRK54_RS15095 -1.6 -6.3 ferredoxin family protein compare
LRK54_RS12185 -1.6 -10.5 penicillin-binding protein activator compare
LRK54_RS18015 -1.6 -10.0 LysR family transcriptional regulator compare
LRK54_RS03035 -1.6 -9.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK54_RS06875 -1.6 -1.0 YiiD C-terminal domain-containing protein compare
LRK54_RS15035 -1.6 -5.1 M48 family metalloprotease compare
LRK54_RS11290 -1.6 -1.9 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS00615 -1.6 -5.6 protease modulator HflC compare
LRK54_RS10195 -1.6 -2.0 hypothetical protein compare
LRK54_RS04995 -1.6 -4.3 LacI family DNA-binding transcriptional regulator compare
LRK54_RS04990 -1.6 -12.1 HAMP domain-containing histidine kinase compare
LRK54_RS12740 -1.6 -11.1 penicillin-binding protein 1B compare
LRK54_RS02950 -1.6 -10.0 sensor histidine kinase compare
LRK54_RS04255 -1.6 -7.9 type IV pilus twitching motility protein PilT compare
LRK54_RS10920 -1.5 -11.7 DEAD/DEAH box helicase compare
LRK54_RS07220 -1.5 -6.0 thiol:disulfide interchange protein DsbA/DsbL compare
LRK54_RS08670 -1.5 -8.9 LacI family transcriptional regulator compare
LRK54_RS11175 -1.5 -6.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS12875 -1.5 -8.2 RNA polymerase factor sigma-54 compare
LRK54_RS16665 -1.5 -7.2 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS04190 -1.5 -4.7 response regulator compare
LRK54_RS03040 -1.5 -3.7 MtnX-like HAD-IB family phosphatase compare
LRK54_RS02475 -1.5 -9.8 TRZ/ATZ family hydrolase compare
LRK54_RS03015 -1.4 -8.6 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK54_RS09945 -1.4 -5.1 class I SAM-dependent methyltransferase compare
LRK54_RS00805 -1.4 -2.7 segregation/condensation protein A compare
LRK54_RS01235 -1.4 -10.9 Slp family lipoprotein compare
LRK54_RS02110 -1.4 -6.5 metalloregulator ArsR/SmtB family transcription factor compare
LRK54_RS00690 -1.4 -8.1 2-methylcitrate synthase compare
LRK54_RS00405 -1.4 -4.4 FHA domain-containing protein compare
LRK54_RS00635 -1.3 -1.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS03290 -1.3 -2.6 RIP metalloprotease RseP compare
LRK54_RS08750 -1.3 -3.8 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS02815 -1.3 -1.8 hypothetical protein compare
LRK54_RS14580 -1.3 -0.8 hypothetical protein compare
LRK54_RS01700 -1.3 -5.1 tRNA pseudouridine(38-40) synthase TruA compare
LRK54_RS13835 -1.3 -7.8 YhgN family NAAT transporter compare
LRK54_RS05610 -1.3 -6.4 GtrA family protein compare
LRK54_RS12190 -1.3 -5.4 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS01350 -1.3 -5.6 SPOR domain-containing protein compare
LRK54_RS02440 -1.3 -1.4 RNA polymerase-binding protein DksA compare
LRK54_RS01285 -1.3 -4.4 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS12725 -1.3 -7.0 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
LRK54_RS08540 -1.3 -4.8 DUF484 family protein compare
LRK54_RS01410 -1.3 -9.2 ABC transporter ATP-binding protein/permease compare
LRK54_RS02175 -1.3 -6.3 exodeoxyribonuclease V subunit gamma compare
LRK54_RS14100 -1.3 -7.9 cytochrome b compare
LRK54_RS14995 -1.2 -5.5 carbon storage regulator CsrA compare
LRK54_RS03880 -1.2 -8.5 pilin compare
LRK54_RS05490 -1.2 -4.4 energy transducer TonB compare
LRK54_RS10120 -1.2 -10.5 glycosyltransferase family 39 protein compare
LRK54_RS11560 -1.2 -2.8 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS11995 -1.2 -6.5 tRNA-Gly compare
LRK54_RS07865 -1.2 -3.6 GntR family transcriptional regulator compare
LRK54_RS10185 -1.2 -9.0 RDD family protein compare
LRK54_RS04285 -1.2 -7.3 kinase compare
LRK54_RS12855 -1.2 -3.7 PTS fructose transporter subunit IIA compare
LRK54_RS12950 -1.2 -5.9 DUF2066 domain-containing protein compare
LRK54_RS04315 -1.2 -2.4 WGR domain-containing protein compare
LRK54_RS05635 -1.2 -6.8 dehydrogenase compare
LRK54_RS01600 -1.2 -5.9 histidinol-phosphate transaminase compare
LRK54_RS05775 -1.2 -6.6 pyruvate kinase compare
LRK54_RS14465 -1.2 -3.8 septum site-determining protein MinC compare
LRK54_RS04100 -1.1 -1.2 ATP-binding cassette domain-containing protein compare
LRK54_RS15070 -1.1 -6.2 PhoH family protein compare
LRK54_RS09735 -1.1 -2.2 hydroxymyristoyl-ACP dehydratase compare
LRK54_RS05300 -1.1 -2.7 homoserine dehydrogenase compare
LRK54_RS16950 -1.1 -8.3 Do family serine endopeptidase compare
LRK54_RS16875 -1.1 -8.7 kinase/pyrophosphorylase compare
LRK54_RS17890 -1.1 -4.9 Rne/Rng family ribonuclease compare
LRK54_RS06585 -1.1 -7.0 VOC family protein compare
LRK54_RS03005 -1.1 -7.6 GNAT family N-acetyltransferase compare
LRK54_RS15240 -1.1 -7.0 FTR1 family protein compare
LRK54_RS06495 -1.1 -7.5 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS09330 -1.1 -6.0 RNA pyrophosphohydrolase compare
LRK54_RS03405 -1.1 -5.1 ribonuclease G compare
LRK54_RS01580 -1.1 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
LRK54_RS16730 -1.1 -2.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS00630 -1.1 -6.0 RNA chaperone Hfq compare
LRK54_RS02535 -1.0 -3.7 50S ribosomal protein L9 compare
LRK54_RS09805 -1.0 -4.2 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS07715 -1.0 -6.0 LacI family DNA-binding transcriptional regulator compare
LRK54_RS05500 -1.0 -1.7 hypothetical protein compare
LRK54_RS03885 -1.0 -9.1 hypothetical protein compare
LRK54_RS04035 -1.0 -5.2 ATP-binding protein compare
LRK54_RS17505 -1.0 -1.4 preprotein translocase subunit SecG compare
LRK54_RS01800 -1.0 -2.0 dCTP deaminase compare
LRK54_RS13085 -1.0 -6.7 alpha-glucosidase family protein compare
LRK54_RS05260 -1.0 -3.8 hypothetical protein compare
LRK54_RS15925 -1.0 -2.0 carboxymuconolactone decarboxylase family protein compare
LRK54_RS14485 -1.0 -7.8 polyketide cyclase compare
LRK54_RS10855 -1.0 -2.6 protein-export chaperone SecB compare
LRK54_RS07985 -1.0 -3.1 ATP-binding protein compare
LRK54_RS06895 -1.0 -1.5 hotdog fold thioesterase compare
LRK54_RS16140 -1.0 -4.9 glycine zipper 2TM domain-containing protein compare
LRK54_RS05630 -1.0 -4.0 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS14470 -1.0 -6.8 GNAT family N-acetyltransferase compare
LRK54_RS02380 -1.0 -3.5 argininosuccinate lyase compare
LRK54_RS04025 -0.9 -0.9 diacylglycerol kinase compare
LRK54_RS11565 -0.9 -2.5 anthranilate phosphoribosyltransferase compare
LRK54_RS09760 -0.9 -3.1 3-oxoacyl-ACP reductase FabG compare
LRK54_RS16050 -0.9 -1.2 tetratricopeptide repeat protein compare


Specific Phenotypes

For 15 genes in this experiment

For stress Manganese (II) chloride tetrahydrate in Rhodanobacter denitrificans FW104-10B01

For stress Manganese (II) chloride tetrahydrate across organisms