Experiment set2IT004 for Pseudomonas fluorescens FW300-N2E2

Compare to:

L-Arabinose carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3842 -6.8 -4.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4597 -6.7 -6.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3630 -6.5 -6.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4825 -6.4 -7.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_612 -6.4 -6.2 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) conserved
Pf6N2E2_3610 -6.3 -6.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3783 -6.2 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4596 -6.0 -10.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_71 -5.8 -6.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_77 -5.8 -5.6 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4826 -5.7 -8.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_5006 -5.7 -10.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3839 -5.6 -5.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5175 -5.6 -16.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_5176 -5.6 -10.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3248 -5.5 -6.7 Probable transmembrane protein compare
Pf6N2E2_3751 -5.3 -14.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4047 -5.2 -7.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_64 -5.0 -4.5 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3782 -5.0 -6.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5177 -4.8 -13.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4564 -4.7 -10.0 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3253 -4.7 -7.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3841 -4.7 -7.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_609 -4.6 -11.0 L-arabonate dehydratase (EC 4.2.1.25) (from data) conserved
Pf6N2E2_3932 -4.6 -5.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3752 -4.6 -22.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3252 -4.4 -10.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4638 -4.3 -2.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5156 -4.2 -2.9 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_66 -4.2 -11.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5527 -4.1 -4.9 Cold shock protein CspC compare
Pf6N2E2_2074 -4.1 -2.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_50 -4.1 -10.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3940 -4.1 -11.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5723 -4.1 -15.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_4048 -4.0 -7.4 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_2753 -4.0 -5.4 HtrA protease/chaperone protein compare
Pf6N2E2_4803 -3.8 -2.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4752 -3.8 -12.3 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_4453 -3.8 -17.8 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_4759 -3.5 -18.1 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_3251 -3.5 -12.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_1381 -3.4 -9.2 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_4372 -3.4 -7.4 FIG00460773: hypothetical protein compare
Pf6N2E2_2217 -3.4 -7.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2073 -3.3 -9.4 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5966 -3.1 -11.4 L-arabinolactonase (EC 3.1.1.15) (from data) conserved
Pf6N2E2_302 -3.0 -6.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5579 -3.0 -7.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_63 -3.0 -3.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_611 -3.0 -4.4 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data) compare
Pf6N2E2_3170 -2.9 -7.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2218 -2.7 -5.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2588 -2.7 -4.0 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_5160 -2.6 -2.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3460 -2.6 -3.0 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_1400 -2.6 -12.8 Sensory box histidine kinase/response regulator compare
Pf6N2E2_5728 -2.6 -6.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5553 -2.4 -10.6 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_3661 -2.4 -7.6 hypothetical protein compare
Pf6N2E2_2277 -2.3 -3.0 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_5969 -2.2 -14.2 ABC transporter for D-galactose/L-arabinose, ATPase component (from data) conserved
Pf6N2E2_610 -2.2 -8.6 Nitrate/nitrite transporter conserved
Pf6N2E2_5967 -2.2 -4.4 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_4187 -2.2 -4.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2465 -2.1 -6.4 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5970 -2.1 -10.5 ABC transporter for D-galactose/L-arabinose, permease component (from data) conserved
Pf6N2E2_5965 -2.0 -2.4 transcriptional regulator compare
Pf6N2E2_1402 -2.0 -5.5 hypothetical protein compare
Pf6N2E2_5968 -2.0 -11.1 ABC transporter for D-galactose/L-arabinose, substrate-binding component (from data) conserved
Pf6N2E2_5894 -2.0 -8.8 Putative threonine efflux protein compare
Pf6N2E2_6065 -2.0 -3.8 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_4009 -1.9 -9.6 GGDEF domain protein compare
Pf6N2E2_5899 -1.9 -7.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4818 -1.8 -4.7 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_4817 -1.8 -13.3 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_3346 -1.7 -7.4 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_4352 -1.7 -3.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5780 -1.7 -9.8 Periplasmic protease compare
Pf6N2E2_3984 -1.7 -8.8 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_1056 -1.7 -1.4 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5014 -1.6 -1.9 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2080 -1.6 -1.8 hypothetical protein compare
Pf6N2E2_5536 -1.6 -2.3 Holliday junction DNA helicase RuvA compare
Pf6N2E2_178 -1.6 -1.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_248 -1.6 -8.9 hypothetical protein compare
Pf6N2E2_2166 -1.6 -8.9 protein of unknown function DUF6, transmembrane compare
Pf6N2E2_3264 -1.6 -2.5 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3349 -1.5 -2.8 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5299 -1.5 -7.5 Benzoate transport protein compare
Pf6N2E2_3351 -1.5 -5.1 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4416 -1.5 -2.6 Tyrosine recombinase XerC compare
Pf6N2E2_3835 -1.4 -4.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_4206 -1.4 -2.2 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5219 -1.4 -7.1 FIG140336: TPR domain protein compare
Pf6N2E2_3282 -1.4 -3.0 FIG005080: Possible exported protein compare
Pf6N2E2_3039 -1.4 -5.7 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5667 -1.4 -6.8 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_3060 -1.4 -3.1 Outer membrane protein H precursor compare
Pf6N2E2_4743 -1.4 -1.5 hypothetical protein compare
Pf6N2E2_4059 -1.4 -1.6 DNA-binding protein HU-alpha compare
Pf6N2E2_4761 -1.3 -7.7 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_4049 -1.3 -6.8 Glycine cleavage system transcriptional activator compare
Pf6N2E2_4579 -1.3 -2.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_5676 -1.3 -4.2 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_2788 -1.3 -2.1 Transcriptional regulator, AsnC family compare
Pf6N2E2_4764 -1.3 -5.9 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_4417 -1.3 -3.2 Protein of unknown function DUF484 compare
Pf6N2E2_1705 -1.3 -1.9 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5746 -1.3 -3.6 Cobalamin synthase compare
Pf6N2E2_4797 -1.2 -2.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3040 -1.2 -6.0 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_114 -1.2 -3.4 Polysaccharide biosynthesis protein compare
Pf6N2E2_4205 -1.2 -3.6 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_3257 -1.2 -4.0 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2340 -1.2 -4.3 Transcriptional regulator, GntR family compare
Pf6N2E2_3899 -1.2 -6.4 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_2258 -1.2 -7.2 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5316 -1.2 -1.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5666 -1.2 -5.4 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5155 -1.2 -2.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_6099 -1.2 -1.7 tRNA-Glu-TTC compare
Pf6N2E2_2869 -1.2 -1.9 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_3786 -1.1 -2.5 Twin-arginine translocation protein TatC compare
Pf6N2E2_4418 -1.1 -1.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4476 -1.1 -6.1 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_2010 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_5001 -1.1 -2.4 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2514 -1.1 -2.4 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_4631 -1.1 -6.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_5768 -1.1 -3.6 DNA recombination-dependent growth factor C compare
Pf6N2E2_2586 -1.1 -1.6 Hpt domain protein compare
Pf6N2E2_2282 -1.1 -3.8 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_2852 -1.1 -6.3 GGDEF domain/EAL domain protein compare
Pf6N2E2_5258 -1.1 -6.1 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_3095 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_3062 -1.0 -4.1 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2186 -1.0 -4.0 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_3258 -1.0 -3.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2013 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_4763 -1.0 -5.7 Biotin synthesis protein BioC compare
Pf6N2E2_1596 -1.0 -2.1 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_1932 -1.0 -4.0 Transcriptional regulator, IclR family compare
Pf6N2E2_4071 -1.0 -2.2 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4570 -1.0 -1.9 Cation/multidrug efflux pump compare
Pf6N2E2_2473 -1.0 -1.3 Major outer membrane lipoprotein I compare
Pf6N2E2_3941 -1.0 -3.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2758 -1.0 -7.5 L-aspartate oxidase (EC 1.4.3.16) compare
Pf6N2E2_2261 -1.0 -5.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_3300 -1.0 -3.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3074 -1.0 -2.0 FIG00960973: hypothetical protein compare
Pf6N2E2_1441 -1.0 -2.2 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_5520 -0.9 -3.8 Sensory box histidine kinase compare
Pf6N2E2_3869 -0.9 -6.3 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_1401 -0.9 -2.7 FIG00955631: hypothetical protein compare
Pf6N2E2_4146 -0.9 -2.3 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_3667 -0.9 -1.4 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_5342 -0.9 -2.3 21 kDa hemolysin precursor compare
Pf6N2E2_2488 -0.9 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5524 -0.9 -6.7 Outer membrane porin, OprD family compare
Pf6N2E2_229 -0.9 -3.0 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_3938 -0.9 -6.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_5722 -0.9 -3.0 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 compare
Pf6N2E2_5257 -0.9 -5.0 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_3260 -0.9 -3.6 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2167 -0.9 -4.3 hypothetical protein compare
Pf6N2E2_4331 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_971 -0.9 -2.3 hypothetical protein compare
Pf6N2E2_279 -0.8 -4.8 Isocitrate lyase (EC 4.1.3.1) compare
Pf6N2E2_2389 -0.8 -6.1 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Pf6N2E2_4762 -0.8 -2.7 Biotin synthesis protein BioH compare
Pf6N2E2_3338 -0.8 -1.4 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_3557 -0.8 -2.4 Chaperone-modulator protein CbpM compare
Pf6N2E2_1676 -0.8 -1.6 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_84 -0.8 -2.2 hypothetical protein compare
Pf6N2E2_3826 -0.8 -3.7 Nitrogen regulation protein NR(I) compare
Pf6N2E2_2513 -0.8 -2.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4454 -0.8 -2.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_4824 -0.8 -2.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_1959 -0.8 -2.6 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_1492 -0.8 -2.2 No significant database matches compare
Pf6N2E2_4612 -0.8 -2.7 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_2527 -0.8 -2.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1153 -0.8 -2.9 small molecule metabolism; degradation; fatty acid compare
Pf6N2E2_280 -0.8 -2.8 hypothetical protein compare
Pf6N2E2_5505 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_4367 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_2509 -0.8 -2.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2367 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_3833 -0.8 -2.9 hypothetical protein compare
Pf6N2E2_5435 -0.8 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1545 -0.8 -3.4 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_3033 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_1437 -0.8 -3.3 Acyl-CoA dehydrogenase family protein compare
Pf6N2E2_4077 -0.8 -1.6 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_51 -0.8 -3.0 hypothetical protein compare
Pf6N2E2_70 -0.8 -2.1 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_1124 -0.8 -1.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4279 -0.8 -5.4 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source L-Arabinose in Pseudomonas fluorescens FW300-N2E2

For carbon source L-Arabinose across organisms