Experiment set2IT004 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Thallium(I) acetate 0.016 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_21625 -2.5 -2.7 Fe/S biogenesis protein NfuA compare
AO353_13960 -2.4 -10.2 ferredoxin-NADP reductase conserved
AO353_12950 -2.3 -6.0 polymerase compare
AO353_19770 -2.2 -3.3 peptidase compare
AO353_07800 -2.1 -5.7 transcriptional repressor BetI conserved
AO353_09235 -2.1 -5.5 phosphoglucomutase compare
AO353_12940 -2.1 -6.1 glycosyl transferase compare
AO353_07805 -2.1 -7.3 betaine-aldehyde dehydrogenase compare
AO353_07810 -2.0 -10.3 choline dehydrogenase conserved
AO353_12045 -2.0 -4.1 iron transporter compare
AO353_20175 -2.0 -2.5 ATP-dependent Clp protease proteolytic subunit compare
AO353_00825 -2.0 -3.3 porin compare
AO353_10620 -2.0 -4.0 hypothetical protein compare
AO353_02005 -1.8 -1.5 hypothetical protein compare
AO353_12420 -1.8 -1.7 predicted FeS cluster maintenance protein (from data) compare
AO353_04930 -1.7 -2.2 flavodoxin compare
AO353_02465 -1.6 -2.7 hypothetical protein compare
AO353_18780 -1.6 -5.1 cobyrinic acid a,c-diamide synthase compare
AO353_19750 -1.6 -2.5 diaminopimelate epimerase compare
AO353_09890 -1.6 -3.7 phosphate ABC transporter ATP-binding protein compare
AO353_05130 -1.5 -2.1 anti-anti-sigma factor compare
AO353_23495 -1.5 -1.8 SAM-dependent methyltransferase compare
AO353_14150 -1.5 -1.6 peptidylprolyl isomerase compare
AO353_02140 -1.5 -6.8 BolA family transcriptional regulator compare
AO353_02000 -1.5 -2.5 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_15785 -1.5 -5.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_13200 -1.5 -6.2 exoribonuclease R compare
AO353_07105 -1.5 -1.3 biotin--protein ligase compare
AO353_06585 -1.5 -4.6 hypothetical protein compare
AO353_01915 -1.4 -2.3 GlcG protein compare
AO353_10885 -1.4 -4.8 metal ABC transporter permease compare
AO353_24130 -1.4 -2.5 hypothetical protein compare
AO353_12935 -1.4 -2.3 glycosyltransferase compare
AO353_04190 -1.4 -1.8 glycerol-3-phosphate dehydrogenase compare
AO353_02145 -1.3 -4.2 hypothetical protein compare
AO353_23400 -1.3 -2.0 hypothetical protein compare
AO353_26115 -1.3 -1.9 hypothetical protein compare
AO353_18320 -1.3 -4.3 hypothetical protein compare
AO353_06045 -1.3 -4.4 exodeoxyribonuclease V subunit beta compare
AO353_17940 -1.3 -2.4 hypothetical protein compare
AO353_00460 -1.2 -2.1 TetR family transcriptional regulator compare
AO353_13140 -1.2 -4.1 tRNA dimethylallyltransferase compare
AO353_04175 -1.2 -3.5 glycerol uptake facilitator GlpF compare
AO353_28700 -1.2 -2.3 hypothetical protein compare
AO353_21935 -1.2 -2.3 nitrite reductase compare
AO353_17165 -1.2 -2.4 ATP-dependent helicase compare
AO353_09745 -1.2 -1.7 hypothetical protein compare
AO353_03250 -1.2 -1.7 gluconokinase compare
AO353_11850 -1.2 -3.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_09720 -1.2 -1.6 hypothetical protein compare
AO353_09900 -1.2 -6.6 phosphate ABC transporter permease compare
AO353_02250 -1.1 -2.5 chorismate synthase compare
AO353_27675 -1.1 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_19825 -1.1 -4.9 shikimate dehydrogenase compare
AO353_09950 -1.1 -3.2 aspartate ammonia-lyase compare
AO353_06710 -1.1 -1.7 riboflavin synthase subunit alpha compare
AO353_12580 -1.1 -1.2 type II secretory protein PulK compare
AO353_13220 -1.1 -4.3 hypothetical protein compare
AO353_08315 -1.1 -4.3 multidrug transporter compare
AO353_20185 -1.1 -4.0 DNA-binding protein compare
AO353_14740 -1.1 -2.5 GTP-binding protein compare
AO353_22645 -1.1 -2.1 hypothetical protein compare
AO353_15880 -1.1 -5.2 pilus assembly protein PilW compare
AO353_19610 -1.1 -3.0 hypothetical protein compare
AO353_11730 -1.0 -5.0 glutamate--cysteine ligase compare
AO353_20510 -1.0 -1.5 amidase compare
AO353_16805 -1.0 -3.4 recombinase RecA compare
AO353_27650 -1.0 -3.0 cell division protein FtsK compare
AO353_21475 -1.0 -3.6 hypothetical protein compare
AO353_09835 -1.0 -2.4 rubredoxin compare
AO353_26285 -1.0 -1.1 hypothetical protein compare
AO353_10455 -1.0 -1.5 tRNA modification GTPase MnmE compare
AO353_07155 -1.0 -4.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_12500 -1.0 -1.3 shikimate kinase compare
AO353_17305 -1.0 -3.3 TetR family transcriptional regulator compare
AO353_14220 -1.0 -1.5 ribosomal large subunit pseudouridine synthase D compare
AO353_16345 -1.0 -2.4 energy transducer TonB compare
AO353_26220 -1.0 -2.1 hypothetical protein compare
AO353_20975 -1.0 -4.0 hypothetical protein compare
AO353_13155 -1.0 -2.7 hypothetical protein compare
AO353_20170 -1.0 -3.0 trigger factor compare
AO353_12125 -1.0 -4.0 glutaredoxin compare
AO353_24425 -1.0 -1.9 amino acid ABC transporter permease compare
AO353_23165 -0.9 -2.5 cupin compare
AO353_08100 -0.9 -2.4 chemotaxis protein CheY compare
AO353_15170 -0.9 -2.1 cytochrome D ubiquinol oxidase subunit III compare
AO353_12880 -0.9 -1.7 ADP-heptose--LPS heptosyltransferase compare
AO353_08165 -0.9 -1.8 pyrroline-5-carboxylate reductase compare
AO353_26870 -0.9 -2.1 AP endonuclease compare
AO353_15000 -0.9 -2.3 glycerate dehydrogenase compare
AO353_04220 -0.9 -3.1 chemotaxis protein CheY compare
AO353_02025 -0.9 -5.1 mannose-1-phosphate guanyltransferase compare
AO353_26945 -0.9 -1.4 transcriptional regulator compare
AO353_24535 -0.9 -1.0 hypothetical protein compare
AO353_20565 -0.9 -1.5 tRNA-Ala compare
AO353_00515 -0.9 -1.7 hypothetical protein compare
AO353_12350 -0.9 -1.9 preprotein translocase compare
AO353_15580 -0.9 -2.9 2-oxoisovalerate dehydrogenase compare
AO353_08115 -0.9 -3.4 energy transducer TonB compare
AO353_02660 -0.9 -2.4 peptidase P60 compare
AO353_26830 -0.9 -2.2 histidine kinase compare
AO353_20045 -0.9 -3.3 molecular chaperone Hsp20 compare
AO353_06415 -0.9 -2.5 hypothetical protein compare
AO353_08080 -0.8 -3.6 chemotaxis protein compare
AO353_11750 -0.8 -1.5 ATPase compare
AO353_20390 -0.8 -2.7 rhodanese compare
AO353_14260 -0.8 -3.8 50s ribosomal protein l13 compare
AO353_12135 -0.8 -2.4 rRNA methylase compare
AO353_14935 -0.8 -2.3 aminopeptidase compare
AO353_23430 -0.8 -2.0 (2Fe-2S)-binding protein compare
AO353_10615 -0.8 -2.7 pilus assembly protein PilZ compare
AO353_06850 -0.8 -2.5 MFS transporter compare
AO353_24405 -0.8 -2.0 ArsR family transcriptional regulator compare
AO353_13420 -0.8 -1.2 hypothetical protein compare
AO353_02015 -0.8 -3.2 acetyltransferase compare
AO353_02040 -0.8 -1.5 integration host factor subunit beta compare
AO353_16355 -0.8 -2.6 TetR family transcriptional regulator compare
AO353_03590 -0.8 -1.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_01020 -0.8 -2.1 hypothetical protein compare
AO353_26055 -0.8 -1.3 hypothetical protein compare
AO353_10710 -0.8 -2.8 tryptophan synthase subunit beta compare
AO353_08170 -0.8 -2.4 hypothetical protein compare
AO353_18585 -0.8 -4.2 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) compare
AO353_29270 -0.8 -2.0 type VI secretion system protein compare
AO353_02590 -0.8 -1.8 MarR family transcriptional regulator compare
AO353_18765 -0.8 -2.2 hypothetical protein compare
AO353_12870 -0.8 -5.8 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_07075 -0.8 -2.7 elongation factor Tu compare
AO353_09895 -0.8 -3.6 phosphate ABC transporter permease compare
AO353_20840 -0.8 -1.1 ribose pyranase compare
AO353_12540 -0.8 -1.9 hypothetical protein compare
AO353_04420 -0.8 -1.8 Fe-S protein compare
AO353_09030 -0.8 -0.8 iron donor protein CyaY compare
AO353_11610 -0.8 -1.9 glutamine ABC transporter ATP-binding protein compare
AO353_02010 -0.8 -2.7 glycosyl transferase family 1 compare
AO353_19530 -0.8 -1.2 quinohemoprotein amine dehydrogenase compare
AO353_11165 -0.7 -3.8 hypothetical protein compare
AO353_24970 -0.7 -2.2 formate dehydrogenase compare
AO353_09785 -0.7 -1.7 hypothetical protein compare
AO353_11340 -0.7 -1.0 MarR family transcriptional regulator compare
AO353_14420 -0.7 -2.0 molecular chaperone DnaK compare
AO353_22390 -0.7 -3.1 aldehyde dehydrogenase compare
AO353_00345 -0.7 -2.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO353_13865 -0.7 -1.6 hypothetical protein compare
AO353_02710 -0.7 -4.6 (p)ppGpp synthetase compare
AO353_09830 -0.7 -3.9 pyridine nucleotide-disulfide oxidoreductase compare
AO353_02135 -0.7 -3.7 hypothetical protein compare
AO353_09905 -0.7 -3.9 phosphate-binding protein compare
AO353_05150 -0.7 -2.3 ABC transporter ATP-binding protein compare
AO353_10990 -0.7 -3.4 glutamate:protein symporter compare
AO353_25320 -0.7 -1.6 phosphoribosyl-dephospho-CoA transferase compare
AO353_03935 -0.7 -1.9 fructose-bisphosphate aldolase compare
AO353_00875 -0.7 -3.6 transcriptional regulator compare
AO353_01685 -0.7 -1.0 hypothetical protein compare
AO353_00235 -0.7 -1.7 transcriptional regulator compare
AO353_08620 -0.7 -1.2 hypothetical protein compare
AO353_26090 -0.7 -1.4 hypothetical protein compare
AO353_00750 -0.7 -2.0 GntR family transcriptional regulator compare
AO353_08365 -0.7 -2.9 L-cystine transporter tcyP compare
AO353_08980 -0.7 -1.7 heme biosynthesis operon protein HemX compare
AO353_09315 -0.7 -3.6 LysR family transcriptional regulator compare
AO353_15585 -0.7 -2.1 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_27415 -0.7 -1.2 hypothetical protein compare
AO353_01990 -0.7 -3.1 UDP-N-acetylglucosamine 2-epimerase compare
AO353_15555 -0.7 -1.8 fumarylacetoacetase compare
AO353_26070 -0.7 -1.4 hypothetical protein compare
AO353_06260 -0.7 -2.7 NAD(FAD)-utilizing dehydrogenase compare
AO353_07520 -0.7 -4.2 8-amino-7-oxononanoate synthase compare
AO353_27090 -0.7 -1.2 hypothetical protein compare
AO353_27155 -0.6 -1.1 hypothetical protein compare
AO353_25955 -0.6 -1.6 NIPSNAP family containing protein compare
AO353_09345 -0.6 -1.3 hypothetical protein compare
AO353_23730 -0.6 -1.2 hypothetical protein compare
AO353_23720 -0.6 -1.7 BatB protein compare
AO353_24275 -0.6 -1.0 transcriptional regulator compare
AO353_00250 -0.6 -1.7 hypothetical protein compare
AO353_12915 -0.6 -3.1 carbamoyltransferase compare
AO353_19720 -0.6 -1.9 hemolysin D compare
AO353_12130 -0.6 -2.4 preprotein translocase subunit SecB compare
AO353_19300 -0.6 -2.0 exonuclease compare
AO353_29145 -0.6 -1.7 HxlR family transcriptional regulator compare
AO353_20485 -0.6 -2.4 hypothetical protein compare
AO353_13610 -0.6 -2.0 precorrin isomerase compare
AO353_21055 -0.6 -2.1 glycosyl hydrolase compare
AO353_18775 -0.6 -2.7 flagellar biosynthesis protein FlhF compare
AO353_27995 -0.6 -1.9 RpiR family transcriptional regulator compare
AO353_21355 -0.6 -1.2 xylose isomerase compare
AO353_00140 -0.6 -1.7 phage tail protein compare
AO353_24120 -0.6 -1.1 hypothetical protein compare
AO353_09275 -0.6 -1.4 DNA-directed RNA polymerase subunit omega compare
AO353_12395 -0.6 -1.6 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_07445 -0.6 -0.8 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_25015 -0.6 -1.6 polyketide cyclase compare
AO353_07205 -0.6 -2.2 lipoate--protein ligase compare
AO353_20270 -0.6 -1.7 spore coat protein compare
AO353_22530 -0.6 -1.5 hypothetical protein compare
AO353_07510 -0.6 -3.3 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_07505 -0.6 -3.0 dethiobiotin synthetase compare
AO353_25385 -0.6 -1.3 molybdenum cofactor biosynthesis protein MoaC compare
AO353_24440 -0.6 -1.1 reactive intermediate/imine deaminase compare


Specific Phenotypes

For 6 genes in this experiment

For stress Thallium(I) acetate in Pseudomonas fluorescens FW300-N2E3

For stress Thallium(I) acetate across organisms