Experiment set2IT004 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with D-Cycloserine 0.12 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS14990 +2.6 21.4 amino acid transporter compare
CA265_RS11605 +1.6 12.7 Proline dehydrogenase (EC 1.5.5.2) (from data) compare
CA265_RS04400 +1.5 8.2 hypothetical protein compare
CA265_RS05725 +1.5 8.0 hypothetical protein compare
CA265_RS17690 +1.5 10.2 DNA-binding response regulator compare
CA265_RS04395 +1.4 9.4 heptosyltransferase compare
CA265_RS17190 +1.3 11.1 beta-N-acetylglucosaminidase compare
CA265_RS18080 +1.3 8.8 hypothetical protein compare
CA265_RS17695 +1.2 6.5 hypothetical protein compare
CA265_RS25215 +1.2 4.1 MBL fold hydrolase compare
CA265_RS01035 +1.1 6.1 hypothetical protein compare
CA265_RS22010 +1.1 2.1 hypothetical protein compare
CA265_RS25185 +1.0 1.7 glycine dehydrogenase (aminomethyl-transferring) compare
CA265_RS25110 +1.0 6.3 polyprenyl synthetase compare
CA265_RS19165 +1.0 2.7 serine hydroxymethyltransferase compare
CA265_RS09810 +0.9 7.0 glucose-6-phosphate dehydrogenase compare
CA265_RS23545 +0.9 1.8 NADH dehydrogenase subunit D compare
CA265_RS03715 +0.9 2.7 hypothetical protein compare
CA265_RS18495 +0.9 2.1 hypothetical protein compare
CA265_RS19590 +0.8 3.0 hypothetical protein compare
CA265_RS15880 +0.8 5.4 sugar ABC transporter ATP-binding protein compare
CA265_RS14910 +0.8 5.7 ABC transporter ATP-binding protein compare
CA265_RS09415 +0.8 2.6 hypothetical protein compare
CA265_RS08570 +0.8 2.4 dehydratase compare
CA265_RS07535 +0.8 2.1 ATPase compare
CA265_RS08315 +0.7 1.3 tRNA-Lys compare
CA265_RS18555 +0.7 1.9 hypothetical protein compare
CA265_RS09705 +0.7 2.2 copper oxidase compare
CA265_RS04940 +0.6 1.6 RecX family transcriptional regulator compare
CA265_RS05945 +0.6 2.9 polysaccharide biosynthesis protein GtrA compare
CA265_RS06200 +0.6 3.9 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB compare
CA265_RS17390 +0.6 3.5 PadR family transcriptional regulator compare
CA265_RS24700 +0.6 2.4 hypothetical protein compare
CA265_RS15010 +0.6 3.1 hypothetical protein compare
CA265_RS24040 +0.6 1.7 seryl-tRNA synthetase compare
CA265_RS20270 +0.6 2.0 methionine--tRNA ligase compare
CA265_RS18260 +0.6 1.1 hypothetical protein compare
CA265_RS15810 +0.6 2.5 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
CA265_RS22895 +0.6 2.8 aminodeoxychorismate/anthranilate synthase component II compare
CA265_RS06405 +0.6 1.2 hypothetical protein compare
CA265_RS20070 +0.6 3.0 NadR compare
CA265_RS18550 +0.5 1.2 N-acetyltransferase compare
CA265_RS15195 +0.5 3.7 hypothetical protein compare
CA265_RS05720 +0.5 3.8 hypothetical protein compare
CA265_RS21910 +0.5 4.2 glycoside hydrolase compare
CA265_RS10170 +0.5 1.7 hypothetical protein compare
CA265_RS06400 +0.5 2.9 DNA-binding response regulator compare
CA265_RS18760 +0.5 3.0 ribonuclease III compare
CA265_RS21395 +0.5 1.9 hypothetical protein compare
CA265_RS05985 +0.5 1.0 hypothetical protein compare
CA265_RS23895 +0.5 2.2 preprotein translocase compare
CA265_RS07840 +0.5 1.9 hypothetical protein compare
CA265_RS23960 +0.5 0.6 glycine cleavage system protein T compare
CA265_RS20175 +0.5 1.8 thiamine-phosphate diphosphorylase compare
CA265_RS25435 +0.5 2.4 hypothetical protein compare
CA265_RS15900 +0.5 2.1 hypothetical protein compare
CA265_RS04305 +0.5 2.2 hypothetical protein compare
CA265_RS24830 +0.5 3.9 beta-N-acetylhexosaminidase compare
CA265_RS19405 +0.5 2.2 transcriptional regulator compare
CA265_RS25330 +0.5 1.7 DoxX family protein compare
CA265_RS15200 +0.5 2.1 hypothetical protein compare
CA265_RS19410 +0.5 1.6 hypothetical protein compare
CA265_RS07230 +0.5 0.7 hypothetical protein compare
CA265_RS23120 +0.5 1.6 hypothetical protein compare
CA265_RS24955 +0.5 1.7 methyltransferase type 11 compare
CA265_RS03180 +0.5 1.5 hypothetical protein compare
CA265_RS23305 +0.5 0.9 hypothetical protein compare
CA265_RS14960 +0.5 2.1 hypothetical protein compare
CA265_RS07515 +0.5 3.2 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS01065 +0.4 2.3 hypothetical protein compare
CA265_RS21905 +0.4 2.3 hypothetical protein compare
CA265_RS04390 +0.4 2.0 histidine phosphatase family protein compare
CA265_RS25345 +0.4 2.0 hypothetical protein compare
CA265_RS02840 +0.4 1.4 30S ribosomal protein S30 compare
CA265_RS13050 +0.4 2.0 hypothetical protein compare
CA265_RS09480 +0.4 3.2 magnesium transporter compare
CA265_RS20010 +0.4 1.8 methylmalonyl-CoA mutase compare
CA265_RS13085 +0.4 1.5 osmotically inducible protein OsmC compare
CA265_RS04355 +0.4 2.7 hypothetical protein compare
CA265_RS22630 +0.4 2.0 nucleoside-diphosphate sugar epimerase compare
CA265_RS10875 +0.4 2.0 hypothetical protein compare
CA265_RS13170 +0.4 1.1 hypothetical protein compare
CA265_RS07755 +0.4 0.9 hypothetical protein compare
CA265_RS14170 +0.4 1.8 DNA repair protein compare
CA265_RS00650 +0.4 1.2 hypothetical protein compare
CA265_RS03125 +0.4 0.9 hypothetical protein compare
CA265_RS02930 +0.4 1.6 beta-glucanase compare
CA265_RS14055 +0.4 3.1 acyl-CoA thioesterase compare
CA265_RS07545 +0.4 2.0 extradiol dioxygenase compare
CA265_RS25060 +0.4 1.9 hypothetical protein compare
CA265_RS02795 +0.4 0.8 hypothetical protein compare
CA265_RS11055 +0.4 2.4 hypothetical protein compare
CA265_RS09270 +0.4 1.0 hypothetical protein compare
CA265_RS04100 +0.4 1.8 uroporphyrinogen-III C-methyltransferase compare
CA265_RS04820 +0.4 2.4 GntR family transcriptional regulator compare
CA265_RS22565 +0.4 2.8 dCTP deaminase compare
CA265_RS08775 +0.4 0.6 hypothetical protein compare
CA265_RS14370 +0.4 2.3 hypothetical protein compare
CA265_RS18315 +0.4 3.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase compare
CA265_RS24770 +0.4 1.2 hypothetical protein compare
CA265_RS17940 +0.4 2.0 hypothetical protein compare
CA265_RS08325 +0.4 2.1 haloacid dehalogenase compare
CA265_RS18040 +0.4 1.8 5'-nucleotidase, lipoprotein e(P4) family compare
CA265_RS18270 +0.4 1.6 hypothetical protein compare
CA265_RS09400 +0.4 1.3 hypothetical protein compare
CA265_RS16930 +0.4 2.2 hypothetical protein compare
CA265_RS07525 +0.4 2.5 NUDIX hydrolase compare
CA265_RS05100 +0.4 2.2 threonylcarbamoyl-AMP synthase compare
CA265_RS15170 +0.4 3.2 peptidase M23 compare
CA265_RS23925 +0.4 2.2 endonuclease compare
CA265_RS17595 +0.4 2.6 MarR family transcriptional regulator compare
CA265_RS23415 +0.4 2.4 histidine decarboxylase compare
CA265_RS11125 +0.4 1.7 hypothetical protein compare
CA265_RS02090 +0.4 1.2 ABC transporter ATP-binding protein compare
CA265_RS15145 +0.4 3.0 amino acid permease compare
CA265_RS00395 +0.4 1.3 hypothetical protein compare
CA265_RS19970 +0.4 1.7 cyclic nucleotide-binding protein compare
CA265_RS25035 +0.4 2.0 molecular chaperone DnaJ compare
CA265_RS14535 +0.4 1.2 DUF4783 domain-containing protein compare
CA265_RS04020 +0.4 2.9 hypothetical protein compare
CA265_RS25040 +0.4 1.8 excinuclease ABC subunit C compare
CA265_RS23670 +0.4 1.8 cyclic nucleotide-binding protein compare
CA265_RS08445 +0.4 0.7 endonuclease compare
CA265_RS10660 +0.4 1.2 acyl dehydratase compare
CA265_RS05655 +0.4 2.4 hypothetical protein compare
CA265_RS10315 +0.4 1.1 hypothetical protein compare
CA265_RS04705 +0.4 1.6 hypothetical protein compare
CA265_RS15650 +0.4 2.3 hypothetical protein compare
CA265_RS23905 +0.4 2.3 hypothetical protein compare
CA265_RS02675 +0.4 1.7 hypothetical protein compare
CA265_RS00465 +0.4 1.6 cupin compare
CA265_RS16155 +0.3 1.7 tRNA pseudouridine(55) synthase TruB compare
CA265_RS19535 +0.3 2.5 hypothetical protein compare
CA265_RS06695 +0.3 2.5 hypothetical protein compare
CA265_RS20280 +0.3 1.3 DoxX family protein compare
CA265_RS04600 +0.3 1.9 hypothetical protein compare
CA265_RS00420 +0.3 1.4 FUSC family protein compare
CA265_RS08770 +0.3 1.0 hypothetical protein compare
CA265_RS15795 +0.3 2.3 dihydroxy-acid dehydratase compare
CA265_RS12800 +0.3 1.3 NAD(P)H-dependent oxidoreductase compare
CA265_RS07925 +0.3 1.7 hypothetical protein compare
CA265_RS12600 +0.3 0.8 hypothetical protein compare
CA265_RS21565 +0.3 0.6 cold-shock protein compare
CA265_RS15805 +0.3 2.0 acetolactate synthase, large subunit, biosynthetic type compare
CA265_RS01855 +0.3 2.5 hypothetical protein compare
CA265_RS14385 +0.3 2.4 hypothetical protein compare
CA265_RS24675 +0.3 1.5 RNA polymerase compare
CA265_RS04230 +0.3 2.4 short-chain dehydrogenase compare
CA265_RS01605 +0.3 2.2 MFS transporter compare
CA265_RS07390 +0.3 1.3 hypothetical protein compare
CA265_RS24950 +0.3 1.6 hypothetical protein compare
CA265_RS09320 +0.3 0.9 hypothetical protein compare
CA265_RS05260 +0.3 1.2 hypothetical protein compare
CA265_RS14980 +0.3 2.4 TIGR01212 family radical SAM protein compare
CA265_RS14360 +0.3 1.2 preprotein translocase subunit SecA compare
CA265_RS19080 +0.3 1.6 hypothetical protein compare
CA265_RS09650 +0.3 0.8 diaminopimelate decarboxylase compare
CA265_RS02315 +0.3 1.5 single-stranded DNA-binding protein compare
CA265_RS01895 +0.3 1.2 hypothetical protein compare
CA265_RS06505 +0.3 1.1 hypothetical protein compare
CA265_RS03100 +0.3 2.2 glucose dehydrogenase compare
CA265_RS03765 +0.3 1.3 hypothetical protein compare
CA265_RS08825 +0.3 1.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CA265_RS19690 +0.3 2.1 hypothetical protein compare
CA265_RS17685 +0.3 2.0 hypothetical protein compare
CA265_RS22210 +0.3 1.9 hypothetical protein compare
CA265_RS20085 +0.3 1.8 peptidase M28 compare
CA265_RS17785 +0.3 1.4 hypothetical protein compare
CA265_RS22715 +0.3 2.0 acyl-CoA dehydrogenase compare
CA265_RS01100 +0.3 2.2 transcriptional regulator compare
CA265_RS12320 +0.3 1.6 hypothetical protein compare
CA265_RS19180 +0.3 2.6 gliding motility protein RemB compare
CA265_RS24385 +0.3 0.9 GNAT family N-acetyltransferase compare
CA265_RS23755 +0.3 2.3 lauroyl acyltransferase compare
CA265_RS11030 +0.3 0.5 twin-arginine translocase TatA/TatE family subunit compare
CA265_RS24360 +0.3 1.2 ATPase compare
CA265_RS25015 +0.3 1.7 hypothetical protein compare
CA265_RS08510 +0.3 1.8 oxidoreductase compare
CA265_RS12875 +0.3 2.3 ABC-F family ATPase compare
CA265_RS06055 +0.3 2.2 neuraminidase compare
CA265_RS24755 +0.3 1.8 hypothetical protein compare
CA265_RS05750 +0.3 2.6 amino acid transporter compare
CA265_RS06265 +0.3 0.9 cold-shock protein compare
CA265_RS01225 +0.3 1.1 hypothetical protein compare
CA265_RS00490 +0.3 0.6 hypothetical protein compare
CA265_RS06175 +0.3 0.6 hypothetical protein compare
CA265_RS09330 +0.3 2.0 AAA family ATPase compare
CA265_RS09580 +0.3 2.0 flagellar motor protein MotB compare
CA265_RS02980 +0.3 1.8 hypothetical protein compare
CA265_RS06040 +0.3 0.8 hypothetical protein compare
CA265_RS21030 +0.3 1.5 hypothetical protein compare
CA265_RS22945 +0.3 1.2 hypothetical protein compare
CA265_RS03745 +0.3 1.4 hypothetical protein compare
CA265_RS07335 +0.3 1.1 hypothetical protein compare
CA265_RS21620 +0.3 2.1 hybrid sensor histidine kinase/response regulator compare
CA265_RS24120 +0.3 1.7 hypothetical protein compare
CA265_RS21350 +0.3 2.2 phosphoenolpyruvate carboxylase compare
CA265_RS25075 +0.3 1.6 phenylacetic acid degradation protein compare
CA265_RS09635 +0.3 1.7 GxxExxY protein compare
CA265_RS15820 +0.3 1.5 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress D-Cycloserine in Pedobacter sp. GW460-11-11-14-LB5

For stress D-Cycloserine across organisms