Experiment set2IT004 for Methanococcus maripaludis JJ

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS03055 -5.1 -4.7 hypothetical protein compare
MMJJ_RS03110 -4.6 -3.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS01935 -4.4 -4.2 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS06695 -4.4 -4.2 amidohydrolase compare
MMJJ_RS08625 -4.2 -8.0 magnesium/cobalt transporter CorA compare
MMJJ_RS08850 -4.2 -2.8 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS01600 -4.1 -2.8 radical SAM protein compare
MMJJ_RS07360 -4.0 -3.0 TIGR00269 family protein compare
MMJJ_RS06485 -4.0 -2.7 phosphoglycerate kinase compare
MMJJ_RS06040 -3.9 -4.6 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03615 -3.8 -3.6 cobalt-precorrin-8 methylmutase compare
MMJJ_RS07720 -3.7 -3.7 UPF0058 family protein compare
MMJJ_RS00210 -3.6 -2.4 DUF530 family protein compare
MMJJ_RS07350 -3.5 -4.5 4Fe-4S binding protein compare
MMJJ_RS04685 -3.4 -11.8 carbamoyltransferase HypF compare
MMJJ_RS01755 -3.4 -3.3 ferrous iron transport protein B compare
MMJJ_RS03840 -3.4 -4.0 DHH family phosphoesterase compare
MMJJ_RS09375 -3.4 -2.5 hypothetical protein compare
MMJJ_RS03865 -3.4 -2.5 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS01350 -3.4 -8.2 sodium:proton antiporter compare
MMJJ_RS06750 -3.3 -4.0 homoaconitase large subunit compare
MMJJ_RS00125 -3.3 -3.1 KEOPS complex subunit Cgi121 compare
MMJJ_RS03200 -3.3 -3.8 uroporphyrinogen-III synthase compare
MMJJ_RS05535 -3.2 -15.4 hypothetical protein compare
MMJJ_RS05330 -3.2 -2.2 DNA polymerase II large subunit compare
MMJJ_RS03820 -3.2 -3.1 hydrogenase formation protein HypD compare
MMJJ_RS03760 -3.1 -4.2 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS00570 -3.1 -2.9 ribonuclease P compare
MMJJ_RS08095 -3.1 -4.7 cobyric acid synthase CobQ compare
MMJJ_RS00600 -3.1 -3.0 hydroxymethylbilane synthase compare
MMJJ_RS08080 -3.0 -12.2 TIGR00300 family protein compare
MMJJ_RS03965 -3.0 -2.9 DNA-directed RNA polymerase subunit L compare
MMJJ_RS04975 -3.0 -3.3 glycosyltransferase family 4 protein compare
MMJJ_RS06625 -3.0 -3.1 pyruvate synthase subunit PorB compare
MMJJ_RS00645 -3.0 -14.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS04145 -2.9 -8.6 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS02200 -2.9 -11.8 chorismate pyruvate-lyase family protein compare
MMJJ_RS03785 -2.9 -3.4 hypothetical protein compare
MMJJ_RS03170 -2.9 -10.5 DUF5612 domain-containing protein compare
MMJJ_RS04485 -2.9 -10.9 riboflavin synthase compare
MMJJ_RS07455 -2.9 -8.1 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS07945 -2.9 -3.8 4Fe-4S binding protein compare
MMJJ_RS03895 -2.9 -5.3 hydrogenase expression/formation protein HypE compare
MMJJ_RS04200 -2.8 -8.0 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS07705 -2.8 -3.3 GTP-binding protein EngB compare
MMJJ_RS07245 -2.8 -6.6 amidohydrolase family protein compare
MMJJ_RS07015 -2.7 -2.5 PFL family protein compare
MMJJ_RS06255 -2.7 -8.3 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS05650 -2.7 -3.6 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS00360 -2.6 -3.5 adenosylhomocysteinase compare
MMJJ_RS03670 -2.6 -5.4 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS06270 -2.6 -9.5 dethiobiotin synthase compare
MMJJ_RS07725 -2.6 -7.5 DNA primase DnaG compare
MMJJ_RS03150 -2.6 -7.8 2-phospho-L-lactate transferase compare
MMJJ_RS04800 -2.5 -6.5 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS06225 -2.5 -3.0 adenosylmethionine decarboxylase compare
MMJJ_RS05490 -2.5 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS06155 -2.5 -6.0 phosphatidylglycerophosphatase A compare
MMJJ_RS01690 -2.5 -3.4 methanogenesis marker 12 protein compare
MMJJ_RS05610 -2.5 -5.4 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS06260 -2.5 -7.5 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS03620 -2.5 -6.3 DUF2097 domain-containing protein compare
MMJJ_RS00205 -2.5 -6.6 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS06250 -2.5 -3.1 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS05655 -2.4 -8.0 HisA/HisF family protein compare
MMJJ_RS06510 -2.4 -3.6 LL-diaminopimelate aminotransferase compare
MMJJ_RS05620 -2.4 -5.4 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS02040 -2.4 -3.6 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS04675 -2.4 -6.3 thiamine pyrophosphate-binding protein compare
MMJJ_RS04475 -2.4 -6.6 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS04595 -2.4 -7.2 hypothetical protein compare
MMJJ_RS07980 -2.4 -11.7 biotin synthase BioB compare
MMJJ_RS06390 -2.4 -2.2 NADPH-dependent F420 reductase compare
MMJJ_RS01880 -2.4 -3.5 RlmE family RNA methyltransferase compare
MMJJ_RS05155 -2.4 -6.6 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS05810 -2.4 -7.0 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS02035 -2.3 -7.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS05950 -2.3 -3.4 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS06265 -2.3 -14.3 8-amino-7-oxononanoate synthase compare
MMJJ_RS04050 -2.3 -1.8 dihydroneopterin aldolase family protein compare
MMJJ_RS01870 -2.3 -2.9 methanogenesis marker 15 protein compare
MMJJ_RS08330 -2.3 -3.7 SufD family Fe-S cluster assembly protein compare
MMJJ_RS06930 -2.3 -3.0 type II methionyl aminopeptidase compare
MMJJ_RS08155 -2.3 -4.6 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS04730 -2.2 -3.5 tyrosine decarboxylase MfnA compare
MMJJ_RS03005 -2.2 -4.1 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS08010 -2.2 -7.8 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS06840 -2.2 -4.3 nickel-dependent hydrogenase large subunit compare
MMJJ_RS05590 -2.2 -3.0 homoserine dehydrogenase compare
MMJJ_RS05935 -2.2 -2.8 Era-like GTP-binding protein compare
MMJJ_RS07470 -2.2 -3.2 50S ribosome-binding GTPase compare
MMJJ_RS07505 -2.2 -1.5 DNA-directed RNA polymerase subunit K compare
MMJJ_RS04565 -2.2 -3.1 sirohydrochlorin nickelochelatase compare
MMJJ_RS06180 -2.2 -3.7 tryptophan--tRNA ligase compare
MMJJ_RS02090 -2.2 -5.8 tyramine--L-glutamate ligase compare
MMJJ_RS05295 -2.1 -10.2 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS06490 -2.1 -2.9 methanogenesis marker 2 protein compare
MMJJ_RS04790 -2.1 -4.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS08620 -2.1 -3.6 DUF373 family protein compare
MMJJ_RS07950 -2.1 -4.4 4Fe-4S binding protein compare
MMJJ_RS03125 -2.1 -4.5 GMC oxidoreductase compare
MMJJ_RS04155 -2.1 -6.1 hypothetical protein compare
MMJJ_RS08250 -2.1 -6.4 hydrogenase maturation peptidase HycI compare
MMJJ_RS00475 -2.1 -2.7 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS06715 -2.1 -11.5 lactaldehyde dehydrogenase compare
MMJJ_RS04980 -2.1 -4.3 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS06175 -2.0 -2.9 DUF1743 domain-containing protein compare
MMJJ_RS07410 -2.0 -3.8 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS08055 -2.0 -6.2 methanogenesis marker 14 protein compare
MMJJ_RS03580 -2.0 -3.2 TIGR00303 family protein compare
MMJJ_RS03230 -2.0 -4.3 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS07785 -2.0 -2.7 fumarate reductase subunit A compare
MMJJ_RS06220 -2.0 -5.6 polyamine aminopropyltransferase compare
MMJJ_RS00580 -2.0 -2.5 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS04700 -2.0 -7.4 deoxyhypusine synthase compare
MMJJ_RS00355 -2.0 -3.6 ribonuclease P protein component 4 compare
MMJJ_RS01345 -2.0 -5.0 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS04995 -1.9 -5.1 Tfx family DNA-binding protein compare
MMJJ_RS06700 -1.9 -4.4 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS04985 -1.9 -2.7 glutamyl-tRNA reductase compare
MMJJ_RS06760 -1.9 -4.4 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS00275 -1.9 -2.9 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS03490 -1.9 -2.3 ribonuclease VapC compare
MMJJ_RS02855 -1.9 -9.5 DEAD/DEAH box helicase compare
MMJJ_RS04520 -1.9 -4.7 coenzyme F430 synthase compare
MMJJ_RS07190 -1.9 -4.4 RtcB family protein compare
MMJJ_RS08840 -1.9 -4.5 calcium/sodium antiporter compare
MMJJ_RS04655 -1.8 -5.0 FAD-dependent oxidoreductase compare
MMJJ_RS05415 -1.8 -2.6 hypothetical protein compare
MMJJ_RS06010 -1.8 -7.1 hypothetical protein compare
MMJJ_RS07160 -1.8 -14.6 M20 family metallo-hydrolase compare
MMJJ_RS01810 -1.8 -1.8 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS03660 -1.8 -3.7 DUF447 family protein compare
MMJJ_RS03295 -1.8 -11.1 PHP domain-containing protein compare
MMJJ_RS06865 -1.8 -2.7 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS07155 -1.8 -7.5 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS02275 -1.8 -4.2 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06185 -1.8 -3.7 cobalamin biosynthesis protein compare
MMJJ_RS05260 -1.8 -5.6 ATP-grasp domain-containing protein compare
MMJJ_RS04650 -1.8 -5.6 nitrogenase iron protein compare
MMJJ_RS08925 -1.7 -8.8 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS06805 -1.7 -2.8 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS04670 -1.7 -3.9 DUF2117 domain-containing protein compare
MMJJ_RS05065 -1.7 -3.3 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS00270 -1.7 -3.3 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS01750 -1.7 -3.5 ferrous iron transport protein A compare
MMJJ_RS03650 -1.7 -6.7 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS01360 -1.7 -2.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS05070 -1.7 -2.2 DNA primase catalytic subunit PriS compare
MMJJ_RS03115 -1.7 -5.4 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS00385 -1.7 -8.9 TIGR00454 family protein compare
MMJJ_RS07715 -1.7 -4.1 UbiD family decarboxylase compare
MMJJ_RS07345 -1.7 -5.7 homocysteine biosynthesis protein compare
MMJJ_RS08035 -1.7 -6.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS02920 -1.7 -2.0 30S ribosomal protein S27ae compare
MMJJ_RS09190 -1.7 -1.5 tryptophan synthase subunit beta compare
MMJJ_RS07430 -1.7 -2.7 ribonuclease VapC compare
MMJJ_RS09135 -1.6 -9.0 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS06375 -1.6 -2.9 UbiX family flavin prenyltransferase compare
MMJJ_RS05375 -1.6 -11.6 radical SAM protein compare
MMJJ_RS04150 -1.6 -3.2 DUF5379 domain-containing protein compare
MMJJ_RS04680 -1.6 -8.7 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMJJ_RS02045 -1.6 -3.5 molybdenum cofactor guanylyltransferase compare
MMJJ_RS05445 -1.6 -1.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS06855 -1.6 -1.6 DUF2104 domain-containing protein compare
MMJJ_RS04770 -1.6 -4.3 formate-dependent phosphoribosylglycinamide formyltransferase compare
MMJJ_RS08660 -1.6 -3.1 acetylornithine transaminase compare
MMJJ_RS05380 -1.6 -1.3 hypothetical protein compare
MMJJ_RS08535 -1.6 -2.8 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS01200 -1.6 -2.9 PRC-barrel domain-containing protein compare
MMJJ_RS00560 -1.5 -2.5 homoisocitrate dehydrogenase compare
MMJJ_RS08020 -1.5 -7.8 nucleotidyltransferase domain-containing protein compare
MMJJ_RS03190 -1.5 -2.8 phosphopyruvate hydratase compare
MMJJ_RS05645 -1.5 -4.3 4Fe-4S binding protein compare
MMJJ_RS01415 -1.5 -2.2 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS06035 -1.5 -8.3 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS03765 -1.5 -6.5 hypothetical protein compare
MMJJ_RS00195 -1.5 -2.4 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS01875 -1.4 -4.3 global nitrogen regulator NrpR compare
MMJJ_RS06015 -1.4 -8.1 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS07375 -1.4 -8.6 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS00450 -1.4 -1.7 DUF126 domain-containing protein compare
MMJJ_RS06860 -1.4 -3.9 hypothetical protein compare
MMJJ_RS06600 -1.4 -2.6 DUF555 domain-containing protein compare
MMJJ_RS00370 -1.4 -2.0 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS08340 -1.4 -5.0 archaeoflavoprotein AfpA compare
MMJJ_RS01830 -1.4 -2.7 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS06380 -1.4 -3.0 signal recognition particle protein Srp54 compare
MMJJ_RS01410 -1.4 -5.2 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS06200 -1.4 -2.4 phosphoglycerate dehydrogenase compare
MMJJ_RS05995 -1.4 -1.7 ATP-binding cassette domain-containing protein compare
MMJJ_RS08905 -1.4 -9.3 YcaO-related McrA-glycine thioamidation protein compare
MMJJ_RS08405 -1.3 -8.3 nickel-dependent hydrogenase large subunit compare
MMJJ_RS07370 -1.3 -3.4 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS03095 -1.3 -2.1 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS06020 -1.3 -4.5 hypothetical protein compare
MMJJ_RS05360 -1.3 -6.0 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS06110 -1.3 -1.6 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS05225 -1.3 -1.0 Gar1/Naf1 family protein compare
MMJJ_RS06170 -1.3 -6.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in rich t1 experiments