Experiment set2IT004 for Dyella japonica UNC79MFTsu3.2

Compare to:

L-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS09635 -7.8 -5.4 phosphoglycerate dehydrogenase compare
ABZR86_RS20980 -6.2 -4.3 hypothetical protein compare
ABZR86_RS06260 -6.1 -4.2 MBL fold metallo-hydrolase compare
ABZR86_RS02230 -5.6 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS02220 -5.3 -18.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS08250 -5.2 -3.6 phosphate signaling complex protein PhoU compare
ABZR86_RS14100 -5.1 -7.0 DNA adenine methylase compare
ABZR86_RS13515 -5.0 -6.8 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS15980 -5.0 -5.9 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS10715 -4.9 -15.4 serine hydroxymethyltransferase compare
ABZR86_RS11570 -4.9 -11.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS08730 -4.7 -10.8 N-acetylornithine carbamoyltransferase compare
ABZR86_RS06000 -4.7 -7.1 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS15945 -4.7 -5.8 dihydroxy-acid dehydratase compare
ABZR86_RS10215 -4.6 -8.8 inositol monophosphatase family protein compare
ABZR86_RS15940 -4.5 -11.7 ketol-acid reductoisomerase compare
ABZR86_RS18355 -4.5 -2.1 PepSY domain-containing protein compare
ABZR86_RS06705 -4.4 -6.7 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS05875 -4.4 -7.3 cysteine synthase A compare
ABZR86_RS15935 -4.4 -13.8 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS14985 -4.4 -11.7 shikimate dehydrogenase compare
ABZR86_RS15950 -4.4 -7.8 3-isopropylmalate dehydrogenase compare
ABZR86_RS02225 -4.3 -8.2 prephenate dehydratase compare
ABZR86_RS08040 -4.3 -7.7 chorismate synthase compare
ABZR86_RS15975 -4.3 -14.4 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS06710 -4.3 -8.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS05635 -4.2 -10.4 sodium:calcium antiporter compare
ABZR86_RS15305 -4.2 -7.8 MbcA/ParS/Xre antitoxin family protein compare
ABZR86_RS12070 -4.2 -8.3 anthranilate phosphoribosyltransferase compare
ABZR86_RS08715 -4.1 -14.0 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS15960 -4.0 -11.3 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS18640 -4.0 -9.9 class I fructose-bisphosphate aldolase compare
ABZR86_RS08695 -4.0 -11.6 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS12065 -3.9 -6.8 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS18675 -3.9 -5.9 phosphoglycerate kinase compare
ABZR86_RS20775 -3.9 -5.3 TetR/AcrR family transcriptional regulator compare
ABZR86_RS18775 -3.9 -2.7 nucleotidyltransferase family protein compare
ABZR86_RS08710 -3.9 -8.7 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS08000 -3.9 -17.3 tryptophan synthase subunit beta compare
ABZR86_RS15990 -3.9 -3.2 hypothetical protein compare
ABZR86_RS15460 -3.8 -2.6 type I glutamate--ammonia ligase compare
ABZR86_RS21020 -3.8 -12.1 ATP-binding protein compare
ABZR86_RS07250 -3.8 -19.4 phosphoenolpyruvate synthase compare
ABZR86_RS10425 -3.8 -5.7 pyrroline-5-carboxylate reductase compare
ABZR86_RS19560 -3.8 -7.6 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS19235 -3.7 -2.6 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS06730 -3.7 -8.1 histidinol dehydrogenase compare
ABZR86_RS16795 -3.7 -20.7 glutamate synthase large subunit compare
ABZR86_RS06700 -3.7 -5.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS08340 -3.7 -6.9 adenylosuccinate synthase compare
ABZR86_RS19860 -3.7 -12.7 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS21575 -3.6 -10.8 [protein-PII] uridylyltransferase compare
ABZR86_RS02285 -3.6 -7.8 DUF1643 domain-containing protein compare
ABZR86_RS18615 -3.6 -2.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS01395 -3.6 -10.8 Alanine dehydrogenase (EC 1.4.1.1) (from data) conserved
ABZR86_RS05820 -3.5 -5.8 GntR family transcriptional regulator compare
ABZR86_RS15515 -3.5 -5.2 nitrogen regulation protein NR(I) compare
ABZR86_RS06720 -3.5 -6.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS19025 -3.5 -5.4 homoserine O-succinyltransferase compare
ABZR86_RS16800 -3.5 -14.7 FAD-dependent oxidoreductase compare
ABZR86_RS02815 -3.4 -17.6 asparagine synthase B compare
ABZR86_RS15970 -3.4 -8.9 2-isopropylmalate synthase compare
ABZR86_RS19725 -3.4 -16.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR86_RS08010 -3.4 -6.7 phosphoribosylanthranilate isomerase compare
ABZR86_RS09885 -3.4 -2.3 trypsin-like peptidase domain-containing protein compare
ABZR86_RS11555 -3.4 -11.5 phosphoenolpyruvate carboxylase compare
ABZR86_RS06725 -3.4 -7.8 histidinol-phosphate transaminase compare
ABZR86_RS07995 -3.4 -9.3 tryptophan synthase subunit alpha compare
ABZR86_RS10710 -3.4 -3.2 transcriptional regulator NrdR compare
ABZR86_RS07885 -3.4 -8.5 cation diffusion facilitator family transporter compare
ABZR86_RS15965 -3.3 -8.1 branched-chain amino acid transaminase compare
ABZR86_RS06775 -3.3 -16.3 amidophosphoribosyltransferase compare
ABZR86_RS15985 -3.3 -11.5 homoserine dehydrogenase compare
ABZR86_RS08905 -3.3 -11.8 carbonate dehydratase compare
ABZR86_RS11825 -3.3 -2.2 citrate synthase compare
ABZR86_RS19800 -3.3 -10.6 RNase adapter RapZ compare
ABZR86_RS12215 -3.3 -3.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS08700 -3.3 -7.5 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS20835 -3.3 -6.4 TetR family transcriptional regulator C-terminal domain-containing protein compare
ABZR86_RS12280 -3.3 -2.2 dihydrolipoyl dehydrogenase compare
ABZR86_RS17085 -3.2 -5.1 type II 3-dehydroquinate dehydratase compare
ABZR86_RS08705 -3.2 -8.2 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS05995 -3.2 -15.5 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS10475 -3.2 -4.9 shikimate kinase compare
ABZR86_RS05550 -3.2 -3.1 lipopolysaccharide assembly protein LapB compare
ABZR86_RS05885 -3.2 -11.5 LysR substrate-binding domain-containing protein compare
ABZR86_RS15315 -3.1 -10.8 phenylalanine 4-monooxygenase compare
ABZR86_RS11870 -3.1 -12.3 phospholipid-binding protein MlaC compare
ABZR86_RS19865 -3.0 -2.9 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS05900 -3.0 -10.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS18780 -3.0 -2.8 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS10480 -3.0 -3.4 3-dehydroquinate synthase compare
ABZR86_RS12885 -2.9 -2.0 magnesium-translocating P-type ATPase compare
ABZR86_RS06630 -2.9 -3.4 phosphopyruvate hydratase compare
ABZR86_RS21480 -2.9 -8.5 arginase family protein compare
ABZR86_RS13850 -2.9 -5.3 phosphoribosylamine--glycine ligase compare
ABZR86_RS15020 -2.9 -1.9 DUF484 family protein compare
ABZR86_RS08680 -2.8 -10.6 glutamate-5-semialdehyde dehydrogenase compare
ABZR86_RS12180 -2.8 -15.0 anthranilate synthase component I compare
ABZR86_RS16160 -2.8 -5.1 hypothetical protein compare
ABZR86_RS05905 -2.8 -7.7 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS19815 -2.7 -11.7 RNA polymerase factor sigma-54 compare
ABZR86_RS12005 -2.7 -1.8 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS06355 -2.7 -4.7 folate-binding protein YgfZ compare
ABZR86_RS11860 -2.7 -11.4 VacJ family lipoprotein compare
ABZR86_RS15955 -2.6 -8.6 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS07590 -2.6 -15.1 methionine synthase compare
ABZR86_RS09840 -2.6 -1.7 Trm112 family protein compare
ABZR86_RS06715 -2.6 -6.6 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS07180 -2.6 -5.4 RNA polymerase sigma factor RpoE compare
ABZR86_RS08685 -2.6 -4.6 glutamate 5-kinase compare
ABZR86_RS09075 -2.6 -1.7 NrsF family protein compare
ABZR86_RS06735 -2.5 -5.4 ATP phosphoribosyltransferase compare
ABZR86_RS19030 -2.5 -6.6 cystathionine gamma-synthase compare
ABZR86_RS17150 -2.5 -13.6 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
ABZR86_RS07585 -2.5 -11.5 homocysteine S-methyltransferase family protein compare
ABZR86_RS18655 -2.5 -8.2 transketolase compare
ABZR86_RS21515 -2.4 -12.0 phosphodiester glycosidase family protein compare
ABZR86_RS16045 -2.4 -7.2 N-acetylglucosamine-6-phosphate deacetylase compare
ABZR86_RS11845 -2.4 -11.2 RidA family protein compare
ABZR86_RS00570 -2.4 -5.2 acetoacetyl-CoA reductase compare
ABZR86_RS02200 -2.4 -14.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR86_RS02450 -2.4 -5.3 hypothetical protein compare
ABZR86_RS08480 -2.3 -5.8 methylisocitrate lyase compare
ABZR86_RS11485 -2.3 -6.0 hypothetical protein compare
ABZR86_RS12780 -2.3 -6.4 pteridine reductase compare
ABZR86_RS05895 -2.3 -11.5 phosphoadenylyl-sulfate reductase compare
ABZR86_RS11875 -2.3 -10.7 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR86_RS18830 -2.3 -7.4 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS02890 -2.2 -6.9 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS18450 -2.2 -1.5 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS06740 -2.2 -2.3 YerC/YecD family TrpR-related protein compare
ABZR86_RS09660 -2.1 -4.7 MerR family transcriptional regulator compare
ABZR86_RS18465 -2.1 -9.1 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR86_RS02185 -2.1 -9.0 tRNA 2-thiouridine(34) synthase MnmA compare
ABZR86_RS12410 -2.1 -2.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS18815 -2.1 -5.1 FAD-binding protein compare
ABZR86_RS10205 -2.1 -5.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS01400 -2.0 -7.5 Lrp/AsnC family transcriptional regulator conserved
ABZR86_RS00830 -2.0 -8.8 glucose-6-phosphate isomerase compare
ABZR86_RS15715 -2.0 -11.0 glutamine amidotransferase compare
ABZR86_RS09935 -2.0 -2.5 DUF4105 domain-containing protein compare
ABZR86_RS00685 -2.0 -2.0 carbon storage regulator CsrA compare
ABZR86_RS06270 -2.0 -6.1 glycosyltransferase family 9 protein compare
ABZR86_RS07810 -1.9 -5.7 ATP-binding protein compare
ABZR86_RS13245 -1.9 -13.1 DEAD/DEAH box helicase compare
ABZR86_RS18360 -1.9 -10.4 response regulator transcription factor compare
ABZR86_RS09430 -1.9 -5.1 non-heme iron oxygenase ferredoxin subunit compare
ABZR86_RS02880 -1.8 -10.2 sulfate ABC transporter substrate-binding protein compare
ABZR86_RS09845 -1.8 -12.0 DUF1631 domain-containing protein compare
ABZR86_RS11970 -1.8 -10.6 aminopeptidase P N-terminal domain-containing protein compare
ABZR86_RS15925 -1.8 -8.5 threonine ammonia-lyase, biosynthetic compare
ABZR86_RS05890 -1.8 -10.6 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS21725 -1.7 -10.8 YhdP family protein compare
ABZR86_RS08015 -1.7 -1.6 tRNA pseudouridine(38-40) synthase TruA compare
ABZR86_RS15330 -1.7 -8.5 TetR/AcrR family transcriptional regulator compare
ABZR86_RS18480 -1.7 -13.2 homogentisate 1,2-dioxygenase compare
ABZR86_RS17180 -1.7 -8.2 glycosyltransferase compare
ABZR86_RS19795 -1.7 -6.7 PTS sugar transporter subunit IIA compare
ABZR86_RS09015 -1.6 -4.9 anti-sigma factor compare
ABZR86_RS02885 -1.6 -8.7 sulfate ABC transporter permease subunit CysT compare
ABZR86_RS10530 -1.6 -1.6 H-NS histone family protein compare
ABZR86_RS08945 -1.6 -8.0 C40 family peptidase compare
ABZR86_RS14705 -1.6 -6.4 GntR family transcriptional regulator compare
ABZR86_RS11885 -1.6 -2.4 ATP-binding cassette domain-containing protein compare
ABZR86_RS13865 -1.6 -1.2 DNA topoisomerase I compare
ABZR86_RS22180 -1.6 -6.3 DMT family transporter compare
ABZR86_RS06580 -1.6 -2.3 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS06590 -1.5 -1.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS16345 -1.5 -10.6 NADP-dependent isocitrate dehydrogenase compare
ABZR86_RS07320 -1.5 -10.9 endopeptidase La compare
ABZR86_RS11995 -1.5 -6.1 5-formyltetrahydrofolate cyclo-ligase compare
ABZR86_RS05690 -1.5 -1.4 RnfH family protein compare
ABZR86_RS13355 -1.5 -8.9 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS19225 -1.5 -3.7 site-specific tyrosine recombinase XerD compare
ABZR86_RS02305 -1.5 -1.0 hypothetical protein compare
ABZR86_RS21280 -1.4 -3.8 hypothetical protein compare
ABZR86_RS16285 -1.4 -9.0 cell division protein ZapE compare
ABZR86_RS02895 -1.4 -6.6 ABC transporter ATP-binding protein compare
ABZR86_RS18150 -1.4 -6.9 universal stress protein compare
ABZR86_RS07660 -1.4 -3.8 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS12605 -1.4 -2.7 thioredoxin TrxA compare
ABZR86_RS00770 -1.4 -8.9 PhoH family protein compare
ABZR86_RS06275 -1.4 -2.5 DUF6165 family protein compare
ABZR86_RS21435 -1.4 -4.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABZR86_RS20700 -1.4 -1.5 transcriptional repressor AgaR compare
ABZR86_RS15640 -1.4 -1.5 orotate phosphoribosyltransferase compare
ABZR86_RS17210 -1.3 -9.3 TolC family outer membrane protein compare
ABZR86_RS09145 -1.3 -3.0 hypothetical protein compare
ABZR86_RS11880 -1.3 -2.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR86_RS15810 -1.3 -2.1 hypothetical protein compare
ABZR86_RS08630 -1.3 -1.3 SDR family NAD(P)-dependent oxidoreductase compare
ABZR86_RS20605 -1.3 -1.7 FeoA family protein compare
ABZR86_RS02545 -1.3 -2.4 Ref family recombination enhancement nuclease compare
ABZR86_RS05570 -1.3 -4.0 (d)CMP kinase compare
ABZR86_RS05880 -1.3 -5.1 siroheme synthase CysG compare
ABZR86_RS02400 -1.2 -1.3 hypothetical protein compare
ABZR86_RS07665 -1.2 -2.7 exodeoxyribonuclease V subunit beta compare
ABZR86_RS00410 -1.2 -2.0 YajQ family cyclic di-GMP-binding protein compare
ABZR86_RS17560 -1.2 -7.3 NrdJb compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Alanine in Dyella japonica UNC79MFTsu3.2

For carbon source L-Alanine across organisms