Experiment set2IT003 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Thallium(I) acetate 0.008 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_07800 -2.7 -5.7 transcriptional repressor BetI conserved
AO353_21625 -2.6 -2.8 Fe/S biogenesis protein NfuA compare
AO353_19750 -2.5 -3.1 diaminopimelate epimerase compare
AO353_13960 -2.3 -10.6 ferredoxin-NADP reductase conserved
AO353_12950 -2.2 -6.5 polymerase compare
AO353_07805 -2.1 -7.4 betaine-aldehyde dehydrogenase compare
AO353_12940 -2.1 -5.9 glycosyl transferase compare
AO353_07810 -2.0 -10.4 choline dehydrogenase conserved
AO353_20175 -1.9 -2.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_02465 -1.9 -3.0 hypothetical protein compare
AO353_09235 -1.8 -5.9 phosphoglucomutase compare
AO353_00825 -1.8 -3.5 porin compare
AO353_12045 -1.8 -4.3 iron transporter compare
AO353_13140 -1.7 -5.4 tRNA dimethylallyltransferase compare
AO353_10885 -1.7 -5.8 metal ABC transporter permease compare
AO353_12420 -1.7 -2.5 predicted FeS cluster maintenance protein (from data) compare
AO353_10620 -1.6 -3.9 hypothetical protein compare
AO353_22645 -1.6 -2.5 hypothetical protein compare
AO353_09890 -1.5 -3.9 phosphate ABC transporter ATP-binding protein compare
AO353_19770 -1.5 -2.6 peptidase compare
AO353_13200 -1.5 -6.3 exoribonuclease R compare
AO353_04930 -1.5 -2.3 flavodoxin compare
AO353_13100 -1.5 -0.9 GTPase RsgA compare
AO353_08165 -1.4 -2.3 pyrroline-5-carboxylate reductase compare
AO353_06585 -1.4 -4.6 hypothetical protein compare
AO353_18780 -1.4 -4.9 cobyrinic acid a,c-diamide synthase compare
AO353_27710 -1.4 -1.9 DNA repair protein compare
AO353_05420 -1.4 -0.9 peptide chain release factor 3 compare
AO353_04175 -1.4 -3.8 glycerol uptake facilitator GlpF compare
AO353_14740 -1.4 -2.7 GTP-binding protein compare
AO353_14150 -1.4 -1.6 peptidylprolyl isomerase compare
AO353_11770 -1.3 -1.6 molecular chaperone Hsp33 compare
AO353_12935 -1.3 -2.7 glycosyltransferase compare
AO353_02250 -1.3 -2.5 chorismate synthase compare
AO353_18120 -1.3 -2.0 hypothetical protein compare
AO353_09400 -1.3 -2.9 hypothetical protein compare
AO353_19530 -1.3 -1.8 quinohemoprotein amine dehydrogenase compare
AO353_00460 -1.3 -2.4 TetR family transcriptional regulator compare
AO353_04355 -1.2 -1.7 homoserine dehydrogenase compare
AO353_10455 -1.2 -1.8 tRNA modification GTPase MnmE compare
AO353_10445 -1.2 -1.1 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_01685 -1.2 -1.6 hypothetical protein compare
AO353_03585 -1.2 -2.3 ATP-dependent DNA helicase RuvA compare
AO353_11850 -1.2 -3.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_20185 -1.2 -4.5 DNA-binding protein compare
AO353_08645 -1.2 -2.7 transporter compare
AO353_20660 -1.2 -3.0 pseudouridine synthase compare
AO353_24745 -1.2 -2.1 hypothetical protein compare
AO353_20565 -1.1 -1.5 tRNA-Ala compare
AO353_24405 -1.1 -2.5 ArsR family transcriptional regulator compare
AO353_15785 -1.1 -4.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_05125 -1.1 -3.0 BolA family transcriptional regulator compare
AO353_07155 -1.1 -4.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_09250 -1.1 -1.3 exodeoxyribonuclease III compare
AO353_02140 -1.1 -5.3 BolA family transcriptional regulator compare
AO353_08315 -1.1 -4.0 multidrug transporter compare
AO353_24275 -1.0 -1.6 transcriptional regulator compare
AO353_06045 -1.0 -4.1 exodeoxyribonuclease V subunit beta compare
AO353_19825 -1.0 -4.5 shikimate dehydrogenase compare
AO353_06040 -1.0 -2.2 exodeoxyribonuclease V subunit alpha compare
AO353_03410 -1.0 -2.0 chemotaxis protein CheY compare
AO353_06720 -1.0 -1.7 NrdR family transcriptional regulator compare
AO353_15170 -1.0 -2.2 cytochrome D ubiquinol oxidase subunit III compare
AO353_27675 -1.0 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_18325 -1.0 -1.9 hypothetical protein compare
AO353_08470 -1.0 -2.8 RNA pyrophosphohydrolase compare
AO353_07505 -1.0 -4.6 dethiobiotin synthetase compare
AO353_05625 -1.0 -1.5 transcription elongation factor GreA compare
AO353_03715 -1.0 -1.8 H-NS histone compare
AO353_24130 -1.0 -2.2 hypothetical protein compare
AO353_26195 -1.0 -1.7 hypothetical protein compare
AO353_27415 -1.0 -1.9 hypothetical protein compare
AO353_14990 -1.0 -1.7 hypothetical protein compare
AO353_26055 -1.0 -1.8 hypothetical protein compare
AO353_07205 -0.9 -3.3 lipoate--protein ligase compare
AO353_17250 -0.9 -2.4 nitrile hydratase compare
AO353_09900 -0.9 -5.7 phosphate ABC transporter permease compare
AO353_00515 -0.9 -1.9 hypothetical protein compare
AO353_02520 -0.9 -1.6 sodium transporter compare
AO353_04090 -0.9 -1.6 leucyl-tRNA synthetase compare
AO353_08245 -0.9 -2.2 cell division ATP-binding protein FtsE compare
AO353_17305 -0.9 -3.1 TetR family transcriptional regulator compare
AO353_12125 -0.9 -4.0 glutaredoxin compare
AO353_04565 -0.9 -3.1 nucleoid-associated protein compare
AO353_18540 -0.9 -1.7 pseudouridine synthase compare
AO353_09895 -0.9 -4.1 phosphate ABC transporter permease compare
AO353_06455 -0.9 -1.6 D-alanyl-D-alanine carboxypeptidase compare
AO353_08115 -0.9 -3.3 energy transducer TonB compare
AO353_25335 -0.9 -1.1 malonate decarboxylase acyl carrier protein compare
AO353_10725 -0.9 -1.0 dodecin flavoprotein compare
AO353_27525 -0.9 -1.3 AraC family transcriptional regulator compare
AO353_15880 -0.9 -4.5 pilus assembly protein PilW compare
AO353_04190 -0.9 -1.2 glycerol-3-phosphate dehydrogenase compare
AO353_10890 -0.9 -2.7 methionine ABC transporter ATP-binding protein compare
AO353_02300 -0.9 -1.6 MarR family transcriptional regulator compare
AO353_12870 -0.9 -6.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_11165 -0.8 -4.3 hypothetical protein compare
AO353_07075 -0.8 -2.9 elongation factor Tu compare
AO353_03580 -0.8 -1.5 ATP-dependent DNA helicase RuvB compare
AO353_21905 -0.8 -2.2 hypothetical protein compare
AO353_28700 -0.8 -1.7 hypothetical protein compare
AO353_01220 -0.8 -1.2 hypothetical protein compare
AO353_26450 -0.8 -2.1 hypothetical protein compare
AO353_26080 -0.8 -1.4 hypothetical protein compare
AO353_08600 -0.8 -2.1 TetR family transcriptional regulator compare
AO353_13150 -0.8 -4.4 GTPase HflX compare
AO353_03215 -0.8 -2.4 pyridoxamine 5'-phosphate oxidase compare
AO353_20340 -0.8 -2.0 gamma-carboxygeranoyl-CoA hydratase compare
AO353_29215 -0.8 -1.5 alpha/beta hydrolase compare
AO353_07465 -0.8 -1.7 addiction module toxin RelE compare
AO353_07535 -0.8 -2.7 ModE family transcriptional regulator compare
AO353_23085 -0.8 -2.5 AraC family transcriptional regulator compare
AO353_21410 -0.8 -1.1 hypothetical protein compare
AO353_15395 -0.8 -1.9 transcriptional regulator compare
AO353_25615 -0.8 -2.9 2-methylcitrate dehydratase compare
AO353_11730 -0.8 -4.1 glutamate--cysteine ligase compare
AO353_13160 -0.8 -1.5 membrane protease HflC compare
AO353_21475 -0.8 -3.0 hypothetical protein compare
AO353_12500 -0.8 -1.1 shikimate kinase compare
AO353_15490 -0.8 -1.4 hypothetical protein compare
AO353_02660 -0.8 -2.2 peptidase P60 compare
AO353_08980 -0.8 -1.9 heme biosynthesis operon protein HemX compare
AO353_08045 -0.8 -5.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_15185 -0.8 -2.7 ATPase compare
AO353_26945 -0.8 -1.3 transcriptional regulator compare
AO353_23165 -0.7 -2.0 cupin compare
AO353_09915 -0.7 -3.3 long-chain acyl-CoA thioester hydrolase compare
AO353_28930 -0.7 -1.4 hypothetical protein compare
AO353_18775 -0.7 -3.1 flagellar biosynthesis protein FlhF compare
AO353_05150 -0.7 -2.4 ABC transporter ATP-binding protein compare
AO353_12130 -0.7 -2.2 preprotein translocase subunit SecB compare
AO353_05130 -0.7 -1.2 anti-anti-sigma factor compare
AO353_06415 -0.7 -2.2 hypothetical protein compare
AO353_22845 -0.7 -2.0 GNAT family acetyltransferase compare
AO353_26310 -0.7 -1.9 hypothetical protein compare
AO353_21290 -0.7 -1.5 hypothetical protein compare
AO353_21465 -0.7 -1.5 cation:proton antiporter compare
AO353_15005 -0.7 -2.7 lysine transporter LysE compare
AO353_06850 -0.7 -2.2 MFS transporter compare
AO353_16835 -0.7 -1.2 LuxR family transcriptional regulator compare
AO353_13640 -0.7 -2.0 histidine kinase compare
AO353_21055 -0.7 -2.5 glycosyl hydrolase compare
AO353_09905 -0.7 -3.8 phosphate-binding protein compare
AO353_21425 -0.7 -1.9 hypothetical protein compare
AO353_05810 -0.7 -1.8 dehydrogenase compare
AO353_26135 -0.7 -2.5 phage tail protein compare
AO353_15555 -0.7 -2.0 fumarylacetoacetase compare
AO353_27060 -0.7 -1.9 XshC-Cox1 family protein compare
AO353_09775 -0.7 -1.8 hypothetical protein compare
AO353_14420 -0.7 -2.2 molecular chaperone DnaK compare
AO353_09745 -0.7 -0.9 hypothetical protein compare
AO353_01595 -0.7 -1.3 Flp pilus assembly protein CpaB compare
AO353_14260 -0.7 -3.2 50s ribosomal protein l13 compare
AO353_10440 -0.7 -2.4 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_26090 -0.7 -1.6 hypothetical protein compare
AO353_09000 -0.7 -2.2 argininosuccinate lyase compare
AO353_09770 -0.7 -1.8 hypothetical protein compare
AO353_23910 -0.7 -1.6 response regulator compare
AO353_20345 -0.7 -2.8 methylcrotonoyl-CoA carboxylase compare
AO353_15905 -0.7 -3.0 outer membrane protein assembly factor BamB compare
AO353_25990 -0.7 -2.5 aspartyl beta-hydroxylase compare
AO353_24425 -0.7 -1.4 amino acid ABC transporter permease compare
AO353_17035 -0.7 -2.3 hypothetical protein compare
AO353_25530 -0.7 -2.9 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase compare
AO353_05240 -0.6 -1.2 rod shape-determining protein MreD compare
AO353_06320 -0.6 -1.9 AsnC family transcriptional regulator compare
AO353_16020 -0.6 -2.4 tRNA (cmo5U34)-methyltransferase compare
AO353_10705 -0.6 -1.8 tryptophan synthase subunit alpha compare
AO353_10055 -0.6 -4.1 DNA helicase II compare
AO353_20170 -0.6 -2.2 trigger factor compare
AO353_14945 -0.6 -1.5 hypothetical protein compare
AO353_06425 -0.6 -1.9 lipoyl synthase compare
AO353_24940 -0.6 -2.4 nitrogen fixation protein NifU compare
AO353_10710 -0.6 -2.2 tryptophan synthase subunit beta compare
AO353_16825 -0.6 -2.3 hypothetical protein compare
AO353_18305 -0.6 -1.7 RNA helicase compare
AO353_04700 -0.6 -2.9 transcriptional regulator compare
AO353_08170 -0.6 -2.1 hypothetical protein compare
AO353_24190 -0.6 -1.6 hypothetical protein compare
AO353_07740 -0.6 -2.6 ABC transporter for Carnitine, substrate-binding component (from data) compare
AO353_28385 -0.6 -2.1 twitching motility protein PilT compare
AO353_15050 -0.6 -1.7 nitrate transport permease nrtB compare
AO353_26835 -0.6 -1.5 transcriptional regulator compare
AO353_12350 -0.6 -1.4 preprotein translocase compare
AO353_20510 -0.6 -1.2 amidase compare
AO353_00235 -0.6 -1.6 transcriptional regulator compare
AO353_29125 -0.6 -3.0 acetylornithine deacetylase compare
AO353_23855 -0.6 -2.7 hypothetical protein compare
AO353_27100 -0.6 -2.9 hypothetical protein compare
AO353_25710 -0.6 -1.8 iron transporter compare
AO353_25320 -0.6 -1.3 phosphoribosyl-dephospho-CoA transferase compare
AO353_23720 -0.6 -1.7 BatB protein compare
AO353_00490 -0.6 -1.3 PasA protein compare
AO353_09830 -0.6 -3.4 pyridine nucleotide-disulfide oxidoreductase compare
AO353_13220 -0.6 -2.6 hypothetical protein compare
AO353_00895 -0.6 -2.6 2-methylcitrate synthase compare
AO353_04365 -0.6 -2.0 recombinase XerD compare
AO353_23790 -0.6 -1.2 metal-binding protein compare
AO353_23570 -0.6 -1.6 LysR family transcriptional regulator compare
AO353_22990 -0.6 -1.8 phospholipid-binding protein compare


Specific Phenotypes

For 6 genes in this experiment

For stress Thallium(I) acetate in Pseudomonas fluorescens FW300-N2E3

For stress Thallium(I) acetate across organisms