Experiment set2IT003 for Ralstonia solanacearum IBSBF1503

Compare to:

Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

200 most important genes:

  gene name fitness t score description  
RALBFv3_RS10690 -5.9 -4.5 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
RALBFv3_RS11420 -4.6 -15.2 FAD-linked oxidase compare
RALBFv3_RS13755 -4.6 -7.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
RALBFv3_RS12700 -4.5 -1.8 lipopolysaccharide heptosyltransferase I compare
RALBFv3_RS08675 -4.5 -14.0 hypothetical protein compare
RALBFv3_RS22965 -4.4 -16.7 hypothetical protein compare
RALBFv3_RS01300 -4.3 -1.6 glucose-6-phosphate isomerase compare
RALBFv3_RS13775 -4.3 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
RALBFv3_RS13810 -4.1 -1.6 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
RALBFv3_RS14010 -3.7 -4.2 tRNA-Arg compare
RALBFv3_RS07425 -3.7 -2.5 N-acylglucosamine 2-epimerase compare
RALBFv3_RS16275 -3.4 -13.2 hypothetical protein compare
RALBFv3_RS09535 -3.2 -12.3 homoserine O-acetyltransferase compare
RALBFv3_RS18660 -3.1 -9.8 fructosidase compare
RALBFv3_RS06785 -3.1 -2.7 twin-arginine translocase subunit TatC compare
RALBFv3_RS02165 -2.9 -0.9 ATP-dependent zinc metalloprotease FtsH compare
RALBFv3_RS16385 -2.9 -8.9 phosphogluconate dehydratase compare
RALBFv3_RS09875 -2.9 -3.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
RALBFv3_RS13760 -2.9 -6.6 chorismate mutase compare
RALBFv3_RS12670 -2.9 -4.5 glycosyltransferase family 2 protein compare
RALBFv3_RS13670 -2.8 -13.0 sel1 repeat family protein compare
RALBFv3_RS05210 -2.8 -2.8 membrane protein compare
RALBFv3_RS01505 -2.8 -8.1 class I poly(R)-hydroxyalkanoic acid synthase compare
RALBFv3_RS13815 -2.8 -3.0 ADP-glyceromanno-heptose 6-epimerase compare
RALBFv3_RS10865 -2.7 -1.0 PTS fructose transporter subunit IIA compare
RALBFv3_RS03760 -2.7 -0.6 membrane protein compare
RALBFv3_RS01455 -2.6 -1.4 phosphoserine phosphatase SerB compare
RALBFv3_RS04190 -2.6 -7.7 NAD+ synthase compare
RALBFv3_RS04545 -2.5 -0.8 DNA polymerase III subunit chi compare
RALBFv3_RS00640 -2.5 -0.6 hypothetical protein compare
RALBFv3_RS21175 -2.4 -13.7 DUF2875 domain-containing protein compare
RALBFv3_RS00165 -2.4 -0.9 haloacid dehalogenase type II compare
RALBFv3_RS03560 -2.4 -1.5 ribosome silencing factor compare
RALBFv3_RS19810 -2.4 -2.4 TetR/AcrR family transcriptional regulator compare
RALBFv3_RS10990 -2.3 -2.1 protoheme IX farnesyltransferase compare
RALBFv3_RS19100 -2.3 -4.8 multidrug MFS transporter compare
RALBFv3_RS14895 -2.3 -0.5 outer membrane protein assembly factor BamC compare
RALBFv3_RS10560 -2.3 -2.9 thiol:disulfide interchange protein DsbA/DsbL compare
RALBFv3_RS15860 -2.2 -2.1 UDP phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase compare
RALBFv3_RS00770 -2.2 -0.7 muconolactone delta-isomerase compare
RALBFv3_RS15870 -2.1 -3.5 pyridoxal phosphate-dependent aminotransferase compare
RALBFv3_RS12620 -2.1 -0.9 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
RALBFv3_RS16390 -2.1 -12.8 glucose-6-phosphate dehydrogenase compare
RALBFv3_RS03555 -2.1 -4.5 nicotinate-nucleotide adenylyltransferase compare
RALBFv3_RS10055 -2.0 -6.8 lauroyl acyltransferase compare
RALBFv3_RS04610 -2.0 -2.7 CysB family HTH-type transcriptional regulator compare
RALBFv3_RS15310 -2.0 -1.3 FtsH protease activity modulator HflK compare
RALBFv3_RS12475 -2.0 -8.5 MFS transporter compare
RALBFv3_RS04180 -2.0 -1.0 nitrogen regulatory protein P-II 1 compare
RALBFv3_RS05175 -2.0 -1.3 DUF1255 domain-containing protein compare
RALBFv3_RS15805 -1.9 -2.4 inorganic phosphate transporter compare
RALBFv3_RS09800 -1.9 -1.4 sensor histidine kinase compare
RALBFv3_RS14455 -1.9 -1.3 sugar dehydratase compare
RALBFv3_RS01425 -1.9 -0.6 peroxiredoxin compare
RALBFv3_RS10920 -1.9 -0.6 glycerol-3-phosphate dehydrogenase compare
RALBFv3_RS15485 -1.8 -1.5 amino-acid N-acetyltransferase compare
RALBFv3_RS22960 -1.8 -0.7 hypothetical protein compare
RALBFv3_RS06015 -1.8 -2.2 carbohydrate kinase family protein compare
RALBFv3_RS02465 -1.8 -2.4 glutamate racemase compare
RALBFv3_RS12680 -1.8 -3.9 glycosyltransferase family 2 protein compare
RALBFv3_RS11145 -1.7 -7.4 RNase adapter RapZ compare
RALBFv3_RS02460 -1.7 -1.7 fumarate hydratase compare
RALBFv3_RS02680 -1.7 -1.5 hypothetical protein compare
RALBFv3_RS04960 -1.7 -2.2 hypothetical protein compare
RALBFv3_RS09615 -1.6 -3.4 DNA-binding response regulator compare
RALBFv3_RS19635 -1.6 -7.0 hypothetical protein compare
RALBFv3_RS03470 -1.6 -1.4 hypothetical protein compare
RALBFv3_RS18415 -1.6 -1.3 MarR family transcriptional regulator compare
RALBFv3_RS12685 -1.6 -8.2 glycosyl transferase compare
RALBFv3_RS06900 -1.6 -1.0 ABC transporter ATP-binding protein compare
RALBFv3_RS06135 -1.5 -0.7 RNA pyrophosphohydrolase compare
RALBFv3_RS21785 -1.5 -0.7 hypothetical protein compare
RALBFv3_RS08345 -1.5 -1.1 hypothetical protein compare
RALBFv3_RS06615 -1.5 -3.3 glucan biosynthesis protein D compare
RALBFv3_RS07050 -1.5 -0.5 divalent-cation tolerance protein CutA compare
RALBFv3_RS18670 -1.4 -2.6 phosphoenolpyruvate--protein phosphotransferase compare
RALBFv3_RS05690 -1.4 -1.6 preprotein translocase subunit YajC compare
RALBFv3_RS12910 -1.4 -2.3 protein TolQ compare
RALBFv3_RS19140 -1.4 -5.6 acetyltransferase compare
RALBFv3_RS01535 -1.4 -1.3 DUF465 domain-containing protein compare
RALBFv3_RS10805 -1.4 -1.0 O-acetyl-ADP-ribose deacetylase compare
RALBFv3_RS02305 -1.4 -3.3 formyltetrahydrofolate deformylase compare
RALBFv3_RS23305 -1.4 -0.8 hypothetical protein compare
RALBFv3_RS12655 -1.4 -1.6 glucose-1-phosphate thymidylyltransferase compare
RALBFv3_RS03330 -1.4 -0.6 YicC family protein compare
RALBFv3_RS00200 -1.4 -1.9 lysophospholipid transporter LplT compare
RALBFv3_RS14400 -1.4 -1.0 septum formation protein Maf compare
RALBFv3_RS09490 -1.3 -0.4 DUF3617 domain-containing protein compare
RALBFv3_RS11780 -1.3 -0.3 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase compare
RALBFv3_RS08535 -1.3 -1.1 ureidoglycolate lyase compare
RALBFv3_RS15725 -1.3 -1.0 enoyl-CoA hydratase/isomerase family protein compare
RALBFv3_RS11460 -1.3 -1.6 SAM-dependent methyltransferase compare
RALBFv3_RS01320 -1.3 -2.1 peptidylprolyl isomerase compare
RALBFv3_RS09430 -1.3 -0.8 hypothetical protein compare
RALBFv3_RS12050 -1.3 -10.8 polymerase compare
RALBFv3_RS19520 -1.3 -1.7 type III secretion protein HrpB7 compare
RALBFv3_RS06485 -1.3 -1.8 anthranilate synthase component I compare
RALBFv3_RS11170 -1.3 -5.7 RNA polymerase sigma-54 factor compare
RALBFv3_RS20900 -1.3 -4.1 TetR/AcrR family transcriptional regulator compare
RALBFv3_RS10885 -1.3 -1.5 bacterioferritin compare
RALBFv3_RS15210 -1.3 -1.4 alkene reductase compare
RALBFv3_RS12925 -1.3 -3.8 translocation protein TolB compare
RALBFv3_RS23930 -1.3 -0.5 hypothetical protein compare
RALBFv3_RS09940 -1.3 -5.3 phosphomethylpyrimidine synthase ThiC compare
RALBFv3_RS12940 -1.3 -1.5 7-cyano-7-deazaguanine synthase QueC compare
RALBFv3_RS11725 -1.2 -2.3 branched-chain amino acid transporter compare
RALBFv3_RS06940 -1.2 -0.9 shikimate kinase compare
RALBFv3_RS02510 -1.2 -1.0 heme-binding protein compare
RALBFv3_RS24625 -1.2 -0.5 hypothetical protein compare
RALBFv3_RS18655 -1.2 -3.2 PTS sugar transporter compare
RALBFv3_RS11720 -1.2 -2.9 nucleotidyltransferase family protein compare
RALBFv3_RS03880 -1.2 -0.8 hypothetical protein compare
RALBFv3_RS06655 -1.2 -1.8 cytochrome o ubiquinol oxidase subunit I compare
RALBFv3_RS11470 -1.2 -0.6 FmdB family transcriptional regulator compare
RALBFv3_RS06470 -1.2 -0.5 Co2+/Mg2+ efflux protein ApaG compare
RALBFv3_RS03060 -1.2 -1.8 DUF3619 domain-containing protein compare
RALBFv3_RS14470 -1.2 -1.4 elongation factor 4 compare
RALBFv3_RS05685 -1.2 -0.5 tRNA guanosine(34) transglycosylase Tgt compare
RALBFv3_RS02670 -1.2 -1.2 methylisocitrate lyase compare
RALBFv3_RS18075 -1.2 -0.7 GGDEF domain-containing protein compare
RALBFv3_RS00935 -1.2 -0.8 GALA protein compare
RALBFv3_RS00865 -1.2 -1.6 hypothetical protein compare
RALBFv3_RS19960 -1.2 -0.5 hypothetical protein compare
RALBFv3_RS19125 -1.2 -4.4 threonine dehydrogenase-zn-dependent dehydrogenase compare
RALBFv3_RS08515 -1.2 -0.5 hypothetical protein compare
RALBFv3_RS10785 -1.2 -4.6 dicarboxylate/amino acid:cation symporter compare
RALBFv3_RS19665 -1.2 -1.9 leucine-rich repeat domain-containing protein compare
RALBFv3_RS09845 -1.2 -0.7 multifunctional CCA addition/repair protein compare
RALBFv3_RS05680 -1.2 -1.7 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
RALBFv3_RS04985 -1.2 -1.6 hypothetical protein compare
RALBFv3_RS15195 -1.2 -1.2 ABC transporter ATP-binding protein compare
RALBFv3_RS04600 -1.2 -1.3 sulfite reductase compare
RALBFv3_RS11755 -1.2 -1.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
RALBFv3_RS01520 -1.1 -0.8 RluA family pseudouridine synthase compare
RALBFv3_RS22005 -1.1 -0.3 hypothetical protein compare
RALBFv3_RS01490 -1.1 -3.6 polyhydroxyalkanoate synthesis repressor PhaR compare
RALBFv3_RS09605 -1.1 -1.4 copper chaperone PCu(A)C compare
RALBFv3_RS05460 -1.1 -2.6 3-deoxy-7-phosphoheptulonate synthase compare
RALBFv3_RS01595 -1.1 -0.9 NINE protein compare
RALBFv3_RS06880 -1.1 -0.8 hypothetical protein compare
RALBFv3_RS18665 -1.1 -5.8 porin LamB compare
RALBFv3_RS10770 -1.1 -2.4 D-alanyl-D-alanine carboxypeptidase compare
RALBFv3_RS06620 -1.1 -3.8 glucans biosynthesis glucosyltransferase MdoH compare
RALBFv3_RS08450 -1.1 -2.2 hypothetical protein compare
RALBFv3_RS22185 -1.1 -4.9 glucan biosynthesis protein D compare
RALBFv3_RS13845 -1.1 -2.0 ABC transporter permease compare
RALBFv3_RS09590 -1.1 -0.4 hypothetical protein compare
RALBFv3_RS04200 -1.0 -1.4 hypothetical protein compare
RALBFv3_RS13415 -1.0 -3.1 phage related protein compare
RALBFv3_RS13350 -1.0 -1.4 ATPase compare
RALBFv3_RS10395 -1.0 -1.5 helix-turn-helix domain-containing protein compare
RALBFv3_RS11165 -1.0 -2.1 ribosomal subunit interface protein compare
RALBFv3_RS03320 -1.0 -1.3 DNA-directed RNA polymerase subunit omega compare
RALBFv3_RS19765 -1.0 -2.0 LysR family transcriptional regulator compare
RALBFv3_RS06885 -1.0 -4.5 ABC transporter compare
RALBFv3_RS22565 -1.0 -0.9 SRPBCC domain-containing protein compare
RALBFv3_RS00120 -1.0 -2.0 DNA-binding response regulator compare
RALBFv3_RS04235 -1.0 -4.4 heme biosynthesis protein HemY compare
RALBFv3_RS06955 -1.0 -2.7 pilus assembly protein PilO compare
RALBFv3_RS20185 -1.0 -0.9 hypothetical protein compare
RALBFv3_RS19145 -1.0 -2.3 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
RALBFv3_RS07030 -1.0 -1.8 cytochrome c4 compare
RALBFv3_RS15120 -1.0 -1.4 DNA-binding response regulator compare
RALBFv3_RS10435 -1.0 -3.7 hydroxymethylglutaryl-CoA lyase compare
RALBFv3_RS06930 -1.0 -0.8 deoxyguanosinetriphosphate triphosphohydrolase compare
RALBFv3_RS21070 -1.0 -1.2 metal/formaldehyde-sensitive transcriptional repressor compare
RALBFv3_RS00140 -1.0 -0.6 GALA protein compare
RALBFv3_RS06095 -1.0 -1.0 hypothetical protein compare
RALBFv3_RS03785 -1.0 -1.0 UTP--glucose-1-phosphate uridylyltransferase compare
RALBFv3_RS21065 -1.0 -1.7 hypothetical protein compare
RALBFv3_RS10135 -1.0 -1.2 ABC transporter permease compare
RALBFv3_RS13770 -1.0 -2.9 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
RALBFv3_RS15515 -0.9 -1.6 competence/damage-inducible protein A compare
RALBFv3_RS18650 -0.9 -3.5 LacI family transcriptional regulator compare
RALBFv3_RS04755 -0.9 -2.8 SAM-dependent methyltransferase compare
RALBFv3_RS17365 -0.9 -1.6 flagellar transcriptional activator FlhD compare
RALBFv3_RS15635 -0.9 -3.0 cytochrome c oxidase accessory protein CcoG compare
RALBFv3_RS24085 -0.9 -1.1 hypothetical protein compare
RALBFv3_RS03055 -0.9 -2.2 RNA polymerase sigma factor compare
RALBFv3_RS01420 -0.9 -1.8 two-component sensor histidine kinase compare
RALBFv3_RS02150 -0.9 -1.3 phosphate ABC transporter substrate-binding protein PstS compare
RALBFv3_RS04080 -0.9 -1.7 hypothetical protein compare
RALBFv3_RS05385 -0.9 -1.6 formimidoylglutamase compare
RALBFv3_RS12690 -0.9 -2.1 chain-length determining protein compare
RALBFv3_RS03985 -0.9 -1.9 signal peptidase compare
RALBFv3_RS12145 -0.9 -2.1 lipopolysaccharide heptosyltransferase II compare
RALBFv3_RS22070 -0.9 -2.1 flavodoxin family protein compare
RALBFv3_RS23455 -0.9 -1.2 hypothetical protein compare
RALBFv3_RS10000 -0.9 -1.4 transcriptional regulator compare
RALBFv3_RS05190 -0.9 -0.5 DUF3579 domain-containing protein compare
RALBFv3_RS02610 -0.9 -0.5 3-isopropylmalate dehydrogenase compare
RALBFv3_RS18880 -0.9 -0.9 hypothetical protein compare
RALBFv3_RS01735 -0.9 -0.6 hypothetical protein compare
RALBFv3_RS03260 -0.9 -2.9 NADP-dependent malic enzyme compare
RALBFv3_RS07045 -0.9 -3.7 protein-disulfide reductase DsbD compare
RALBFv3_RS06890 -0.9 -1.3 outer membrane lipid asymmetry maintenance protein MlaD compare
RALBFv3_RS12335 -0.9 -1.7 hypothetical protein compare
RALBFv3_RS04720 -0.9 -0.7 50S ribosomal protein L33 compare
RALBFv3_RS05725 -0.9 -0.4 glutathione S-transferase compare
RALBFv3_RS13000 -0.9 -2.8 DUF3318 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Ralstonia solanacearum IBSBF1503 in in planta experiments

For in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted across organisms